Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2441 and EX28DRAFT_2442 are separated by 800 nucleotides EX28DRAFT_2442 and EX28DRAFT_2443 are separated by 51 nucleotides EX28DRAFT_2443 and EX28DRAFT_2444 are separated by 9 nucleotides
EX28DRAFT_2441: EX28DRAFT_2441 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,471,440 to 2,472,168
_2441
EX28DRAFT_2442: EX28DRAFT_2442 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,472,969 to 2,473,601
_2442
EX28DRAFT_2443: EX28DRAFT_2443 - P pilus assembly protein, pilin FimA, at 2,473,653 to 2,474,174
_2443
EX28DRAFT_2444: EX28DRAFT_2444 - P pilus assembly protein, pilin FimA, at 2,474,184 to 2,475,191
_2444
Position (kb)
2472
2473
2474 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2472.033 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.060 kb on + strand, within EX28DRAFT_2441 at 2472.061 kb on - strand, within EX28DRAFT_2441 at 2472.064 kb on + strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.065 kb on - strand, within EX28DRAFT_2441 at 2472.098 kb on + strand at 2472.175 kb on - strand at 2472.175 kb on - strand at 2472.252 kb on - strand at 2472.254 kb on - strand at 2472.257 kb on + strand at 2472.331 kb on + strand at 2472.363 kb on - strand at 2472.386 kb on - strand at 2472.404 kb on + strand at 2472.405 kb on - strand at 2472.601 kb on + strand at 2472.710 kb on - strand at 2472.744 kb on - strand at 2472.748 kb on + strand at 2472.748 kb on + strand at 2472.749 kb on - strand at 2472.771 kb on - strand at 2472.823 kb on + strand at 2472.823 kb on + strand at 2472.824 kb on - strand at 2472.840 kb on + strand at 2472.873 kb on + strand at 2472.873 kb on + strand at 2472.876 kb on + strand at 2472.876 kb on + strand at 2472.877 kb on - strand at 2472.881 kb on + strand at 2472.899 kb on - strand at 2472.949 kb on - strand at 2472.992 kb on + strand at 2473.046 kb on + strand, within EX28DRAFT_2442 at 2473.052 kb on + strand, within EX28DRAFT_2442 at 2473.169 kb on - strand, within EX28DRAFT_2442 at 2473.171 kb on + strand, within EX28DRAFT_2442 at 2473.223 kb on + strand, within EX28DRAFT_2442 at 2473.308 kb on + strand, within EX28DRAFT_2442 at 2473.308 kb on + strand, within EX28DRAFT_2442 at 2473.371 kb on - strand, within EX28DRAFT_2442 at 2473.493 kb on - strand, within EX28DRAFT_2442 at 2473.534 kb on - strand, within EX28DRAFT_2442 at 2473.597 kb on + strand at 2473.598 kb on - strand at 2473.624 kb on + strand at 2473.625 kb on - strand at 2473.654 kb on + strand at 2473.661 kb on - strand at 2473.726 kb on + strand, within EX28DRAFT_2443 at 2473.727 kb on - strand, within EX28DRAFT_2443 at 2473.961 kb on + strand, within EX28DRAFT_2443 at 2473.962 kb on - strand, within EX28DRAFT_2443 at 2474.057 kb on + strand, within EX28DRAFT_2443 at 2474.078 kb on - strand, within EX28DRAFT_2443 at 2474.153 kb on + strand at 2474.153 kb on + strand at 2474.174 kb on + strand at 2474.241 kb on - strand at 2474.406 kb on - strand, within EX28DRAFT_2444
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,472,033 + EX28DRAFT_2441 0.81 -0.6 2,472,060 + EX28DRAFT_2441 0.85 -2.7 2,472,060 + EX28DRAFT_2441 0.85 -0.7 2,472,060 + EX28DRAFT_2441 0.85 -0.0 2,472,061 - EX28DRAFT_2441 0.85 -0.4 2,472,064 + EX28DRAFT_2441 0.86 +0.0 2,472,065 - EX28DRAFT_2441 0.86 +0.0 2,472,065 - EX28DRAFT_2441 0.86 -0.6 2,472,098 + +0.5 2,472,175 - -1.8 2,472,175 - +0.1 2,472,252 - +1.3 2,472,254 - +0.6 2,472,257 + -0.2 2,472,331 + +0.1 2,472,363 - -0.4 2,472,386 - -0.5 2,472,404 + -0.4 2,472,405 - -1.4 2,472,601 + -1.0 2,472,710 - -0.2 2,472,744 - -0.2 2,472,748 + +0.4 2,472,748 + -0.7 2,472,749 - +0.9 2,472,771 - +0.1 2,472,823 + +0.5 2,472,823 + +0.5 2,472,824 - +0.5 2,472,840 + +1.0 2,472,873 + -0.0 2,472,873 + -0.1 2,472,876 + -0.3 2,472,876 + -0.2 2,472,877 - -0.3 2,472,881 + -0.4 2,472,899 - -0.7 2,472,949 - +0.1 2,472,992 + -0.5 2,473,046 + EX28DRAFT_2442 0.12 -1.2 2,473,052 + EX28DRAFT_2442 0.13 +0.0 2,473,169 - EX28DRAFT_2442 0.32 -0.5 2,473,171 + EX28DRAFT_2442 0.32 -1.0 2,473,223 + EX28DRAFT_2442 0.40 -0.7 2,473,308 + EX28DRAFT_2442 0.54 +0.6 2,473,308 + EX28DRAFT_2442 0.54 -1.7 2,473,371 - EX28DRAFT_2442 0.64 -0.4 2,473,493 - EX28DRAFT_2442 0.83 -0.7 2,473,534 - EX28DRAFT_2442 0.89 +0.3 2,473,597 + -0.4 2,473,598 - -0.0 2,473,624 + +0.1 2,473,625 - -3.8 2,473,654 + -1.3 2,473,661 - -0.3 2,473,726 + EX28DRAFT_2443 0.14 +1.6 2,473,727 - EX28DRAFT_2443 0.14 -0.6 2,473,961 + EX28DRAFT_2443 0.59 -0.0 2,473,962 - EX28DRAFT_2443 0.59 -1.1 2,474,057 + EX28DRAFT_2443 0.77 +0.6 2,474,078 - EX28DRAFT_2443 0.81 -1.6 2,474,153 + -0.0 2,474,153 + -0.8 2,474,174 + -0.7 2,474,241 - +0.4 2,474,406 - EX28DRAFT_2444 0.22 +0.6
Or see this region's nucleotide sequence