Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2442

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2441 and EX28DRAFT_2442 are separated by 800 nucleotidesEX28DRAFT_2442 and EX28DRAFT_2443 are separated by 51 nucleotidesEX28DRAFT_2443 and EX28DRAFT_2444 are separated by 9 nucleotides EX28DRAFT_2441: EX28DRAFT_2441 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,471,440 to 2,472,168 _2441 EX28DRAFT_2442: EX28DRAFT_2442 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,472,969 to 2,473,601 _2442 EX28DRAFT_2443: EX28DRAFT_2443 - P pilus assembly protein, pilin FimA, at 2,473,653 to 2,474,174 _2443 EX28DRAFT_2444: EX28DRAFT_2444 - P pilus assembly protein, pilin FimA, at 2,474,184 to 2,475,191 _2444 Position (kb) 2472 2473 2474Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2472.033 kb on + strand, within EX28DRAFT_2441at 2472.060 kb on + strand, within EX28DRAFT_2441at 2472.060 kb on + strand, within EX28DRAFT_2441at 2472.060 kb on + strand, within EX28DRAFT_2441at 2472.061 kb on - strand, within EX28DRAFT_2441at 2472.064 kb on + strand, within EX28DRAFT_2441at 2472.065 kb on - strand, within EX28DRAFT_2441at 2472.065 kb on - strand, within EX28DRAFT_2441at 2472.098 kb on + strandat 2472.175 kb on - strandat 2472.175 kb on - strandat 2472.252 kb on - strandat 2472.254 kb on - strandat 2472.257 kb on + strandat 2472.331 kb on + strandat 2472.363 kb on - strandat 2472.386 kb on - strandat 2472.404 kb on + strandat 2472.405 kb on - strandat 2472.601 kb on + strandat 2472.710 kb on - strandat 2472.744 kb on - strandat 2472.748 kb on + strandat 2472.748 kb on + strandat 2472.749 kb on - strandat 2472.771 kb on - strandat 2472.823 kb on + strandat 2472.823 kb on + strandat 2472.824 kb on - strandat 2472.840 kb on + strandat 2472.873 kb on + strandat 2472.873 kb on + strandat 2472.876 kb on + strandat 2472.876 kb on + strandat 2472.877 kb on - strandat 2472.881 kb on + strandat 2472.899 kb on - strandat 2472.949 kb on - strandat 2472.992 kb on + strandat 2473.046 kb on + strand, within EX28DRAFT_2442at 2473.052 kb on + strand, within EX28DRAFT_2442at 2473.169 kb on - strand, within EX28DRAFT_2442at 2473.171 kb on + strand, within EX28DRAFT_2442at 2473.223 kb on + strand, within EX28DRAFT_2442at 2473.308 kb on + strand, within EX28DRAFT_2442at 2473.308 kb on + strand, within EX28DRAFT_2442at 2473.371 kb on - strand, within EX28DRAFT_2442at 2473.493 kb on - strand, within EX28DRAFT_2442at 2473.534 kb on - strand, within EX28DRAFT_2442at 2473.597 kb on + strandat 2473.598 kb on - strandat 2473.624 kb on + strandat 2473.625 kb on - strandat 2473.654 kb on + strandat 2473.661 kb on - strandat 2473.726 kb on + strand, within EX28DRAFT_2443at 2473.727 kb on - strand, within EX28DRAFT_2443at 2473.961 kb on + strand, within EX28DRAFT_2443at 2473.962 kb on - strand, within EX28DRAFT_2443at 2474.057 kb on + strand, within EX28DRAFT_2443at 2474.078 kb on - strand, within EX28DRAFT_2443at 2474.153 kb on + strandat 2474.153 kb on + strandat 2474.174 kb on + strandat 2474.241 kb on - strandat 2474.406 kb on - strand, within EX28DRAFT_2444

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,472,033 + EX28DRAFT_2441 0.81 -0.6
2,472,060 + EX28DRAFT_2441 0.85 -2.7
2,472,060 + EX28DRAFT_2441 0.85 -0.7
2,472,060 + EX28DRAFT_2441 0.85 -0.0
2,472,061 - EX28DRAFT_2441 0.85 -0.4
2,472,064 + EX28DRAFT_2441 0.86 +0.0
2,472,065 - EX28DRAFT_2441 0.86 +0.0
2,472,065 - EX28DRAFT_2441 0.86 -0.6
2,472,098 + +0.5
2,472,175 - -1.8
2,472,175 - +0.1
2,472,252 - +1.3
2,472,254 - +0.6
2,472,257 + -0.2
2,472,331 + +0.1
2,472,363 - -0.4
2,472,386 - -0.5
2,472,404 + -0.4
2,472,405 - -1.4
2,472,601 + -1.0
2,472,710 - -0.2
2,472,744 - -0.2
2,472,748 + +0.4
2,472,748 + -0.7
2,472,749 - +0.9
2,472,771 - +0.1
2,472,823 + +0.5
2,472,823 + +0.5
2,472,824 - +0.5
2,472,840 + +1.0
2,472,873 + -0.0
2,472,873 + -0.1
2,472,876 + -0.3
2,472,876 + -0.2
2,472,877 - -0.3
2,472,881 + -0.4
2,472,899 - -0.7
2,472,949 - +0.1
2,472,992 + -0.5
2,473,046 + EX28DRAFT_2442 0.12 -1.2
2,473,052 + EX28DRAFT_2442 0.13 +0.0
2,473,169 - EX28DRAFT_2442 0.32 -0.5
2,473,171 + EX28DRAFT_2442 0.32 -1.0
2,473,223 + EX28DRAFT_2442 0.40 -0.7
2,473,308 + EX28DRAFT_2442 0.54 +0.6
2,473,308 + EX28DRAFT_2442 0.54 -1.7
2,473,371 - EX28DRAFT_2442 0.64 -0.4
2,473,493 - EX28DRAFT_2442 0.83 -0.7
2,473,534 - EX28DRAFT_2442 0.89 +0.3
2,473,597 + -0.4
2,473,598 - -0.0
2,473,624 + +0.1
2,473,625 - -3.8
2,473,654 + -1.3
2,473,661 - -0.3
2,473,726 + EX28DRAFT_2443 0.14 +1.6
2,473,727 - EX28DRAFT_2443 0.14 -0.6
2,473,961 + EX28DRAFT_2443 0.59 -0.0
2,473,962 - EX28DRAFT_2443 0.59 -1.1
2,474,057 + EX28DRAFT_2443 0.77 +0.6
2,474,078 - EX28DRAFT_2443 0.81 -1.6
2,474,153 + -0.0
2,474,153 + -0.8
2,474,174 + -0.7
2,474,241 - +0.4
2,474,406 - EX28DRAFT_2444 0.22 +0.6

Or see this region's nucleotide sequence