Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2397 and EX28DRAFT_2398 overlap by 8 nucleotides EX28DRAFT_2398 and EX28DRAFT_2399 overlap by 14 nucleotides EX28DRAFT_2399 and EX28DRAFT_2400 are separated by 108 nucleotides EX28DRAFT_2400 and EX28DRAFT_2401 are separated by 131 nucleotides
EX28DRAFT_2397: EX28DRAFT_2397 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 2,423,541 to 2,424,374
_2397
EX28DRAFT_2398: EX28DRAFT_2398 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,424,367 to 2,425,203
_2398
EX28DRAFT_2399: EX28DRAFT_2399 - ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component, at 2,425,190 to 2,425,894
_2399
EX28DRAFT_2400: EX28DRAFT_2400 - Cold shock proteins, at 2,426,003 to 2,426,476
_2400
EX28DRAFT_2401: EX28DRAFT_2401 - acetoin reductases, at 2,426,608 to 2,427,378
_2401
Position (kb)
2425
2426 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2424.248 kb on + strand, within EX28DRAFT_2397 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2424.978 kb on - strand, within EX28DRAFT_2398 at 2425.034 kb on - strand, within EX28DRAFT_2398 at 2425.095 kb on + strand, within EX28DRAFT_2398 at 2425.700 kb on - strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.763 kb on + strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.764 kb on - strand, within EX28DRAFT_2399 at 2425.801 kb on + strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2425.802 kb on - strand, within EX28DRAFT_2399 at 2426.008 kb on + strand at 2426.008 kb on + strand at 2426.009 kb on - strand at 2426.267 kb on - strand, within EX28DRAFT_2400 at 2426.429 kb on - strand at 2426.444 kb on - strand at 2426.467 kb on + strand at 2426.468 kb on - strand at 2426.508 kb on - strand at 2426.508 kb on - strand at 2426.529 kb on + strand at 2426.530 kb on - strand at 2426.530 kb on - strand at 2426.599 kb on + strand at 2426.602 kb on + strand at 2426.602 kb on + strand at 2426.613 kb on + strand at 2426.635 kb on + strand at 2426.658 kb on - strand at 2426.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,424,248 + EX28DRAFT_2397 0.85 +0.2 2,424,978 - EX28DRAFT_2398 0.73 +0.0 2,424,978 - EX28DRAFT_2398 0.73 +0.3 2,425,034 - EX28DRAFT_2398 0.80 -0.7 2,425,095 + EX28DRAFT_2398 0.87 -0.3 2,425,700 - EX28DRAFT_2399 0.72 -0.3 2,425,763 + EX28DRAFT_2399 0.81 +0.4 2,425,763 + EX28DRAFT_2399 0.81 +0.6 2,425,764 - EX28DRAFT_2399 0.81 +2.6 2,425,764 - EX28DRAFT_2399 0.81 +0.1 2,425,801 + EX28DRAFT_2399 0.87 +0.6 2,425,802 - EX28DRAFT_2399 0.87 +0.3 2,425,802 - EX28DRAFT_2399 0.87 +0.0 2,425,802 - EX28DRAFT_2399 0.87 +3.6 2,426,008 + -0.5 2,426,008 + +0.0 2,426,009 - +0.7 2,426,267 - EX28DRAFT_2400 0.56 -1.4 2,426,429 - +2.9 2,426,444 - +0.6 2,426,467 + +1.2 2,426,468 - +0.2 2,426,508 - -0.4 2,426,508 - +0.0 2,426,529 + -0.6 2,426,530 - +1.0 2,426,530 - -1.4 2,426,599 + +0.1 2,426,602 + +0.3 2,426,602 + +0.9 2,426,613 + -0.1 2,426,635 + -0.2 2,426,658 - -0.6 2,426,682 - +1.0
Or see this region's nucleotide sequence