Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2377 and EX28DRAFT_2378 overlap by 4 nucleotides EX28DRAFT_2378 and EX28DRAFT_2379 overlap by 4 nucleotides EX28DRAFT_2379 and EX28DRAFT_2380 are separated by 88 nucleotides
EX28DRAFT_2377: EX28DRAFT_2377 - ABC-type Fe3+-siderophore transport system, permease component, at 2,397,909 to 2,398,913
_2377
EX28DRAFT_2378: EX28DRAFT_2378 - ABC-type enterobactin transport system, permease component, at 2,398,910 to 2,399,902
_2378
EX28DRAFT_2379: EX28DRAFT_2379 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 2,399,899 to 2,400,699
_2379
EX28DRAFT_2380: EX28DRAFT_2380 - amino acid adenylation domain, at 2,400,788 to 2,404,645
_2380
Position (kb)
2399
2400
2401 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2398.933 kb on - strand at 2399.088 kb on + strand, within EX28DRAFT_2378 at 2399.392 kb on + strand, within EX28DRAFT_2378 at 2399.549 kb on - strand, within EX28DRAFT_2378 at 2400.510 kb on - strand, within EX28DRAFT_2379 at 2400.619 kb on + strand, within EX28DRAFT_2379 at 2400.619 kb on + strand, within EX28DRAFT_2379 at 2400.640 kb on - strand at 2400.640 kb on - strand at 2401.011 kb on + strand at 2401.012 kb on - strand at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.263 kb on + strand, within EX28DRAFT_2380 at 2401.264 kb on - strand, within EX28DRAFT_2380 at 2401.493 kb on - strand, within EX28DRAFT_2380 at 2401.579 kb on + strand, within EX28DRAFT_2380
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,398,933 - +0.9 2,399,088 + EX28DRAFT_2378 0.18 -1.6 2,399,392 + EX28DRAFT_2378 0.49 +0.8 2,399,549 - EX28DRAFT_2378 0.64 +1.8 2,400,510 - EX28DRAFT_2379 0.76 -1.6 2,400,619 + EX28DRAFT_2379 0.90 -0.0 2,400,619 + EX28DRAFT_2379 0.90 -2.4 2,400,640 - -0.0 2,400,640 - -0.1 2,401,011 + +0.8 2,401,012 - +1.6 2,401,263 + EX28DRAFT_2380 0.12 +0.0 2,401,263 + EX28DRAFT_2380 0.12 +0.2 2,401,263 + EX28DRAFT_2380 0.12 -1.6 2,401,263 + EX28DRAFT_2380 0.12 -0.2 2,401,264 - EX28DRAFT_2380 0.12 -0.0 2,401,493 - EX28DRAFT_2380 0.18 -1.2 2,401,579 + EX28DRAFT_2380 0.21 +1.4
Or see this region's nucleotide sequence