Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2379

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2377 and EX28DRAFT_2378 overlap by 4 nucleotidesEX28DRAFT_2378 and EX28DRAFT_2379 overlap by 4 nucleotidesEX28DRAFT_2379 and EX28DRAFT_2380 are separated by 88 nucleotides EX28DRAFT_2377: EX28DRAFT_2377 - ABC-type Fe3+-siderophore transport system, permease component, at 2,397,909 to 2,398,913 _2377 EX28DRAFT_2378: EX28DRAFT_2378 - ABC-type enterobactin transport system, permease component, at 2,398,910 to 2,399,902 _2378 EX28DRAFT_2379: EX28DRAFT_2379 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 2,399,899 to 2,400,699 _2379 EX28DRAFT_2380: EX28DRAFT_2380 - amino acid adenylation domain, at 2,400,788 to 2,404,645 _2380 Position (kb) 2399 2400 2401Strain fitness (log2 ratio) -2 -1 0 1 2at 2398.933 kb on - strandat 2399.088 kb on + strand, within EX28DRAFT_2378at 2399.392 kb on + strand, within EX28DRAFT_2378at 2399.549 kb on - strand, within EX28DRAFT_2378at 2400.510 kb on - strand, within EX28DRAFT_2379at 2400.619 kb on + strand, within EX28DRAFT_2379at 2400.619 kb on + strand, within EX28DRAFT_2379at 2400.640 kb on - strandat 2400.640 kb on - strandat 2401.011 kb on + strandat 2401.012 kb on - strandat 2401.263 kb on + strand, within EX28DRAFT_2380at 2401.263 kb on + strand, within EX28DRAFT_2380at 2401.263 kb on + strand, within EX28DRAFT_2380at 2401.263 kb on + strand, within EX28DRAFT_2380at 2401.264 kb on - strand, within EX28DRAFT_2380at 2401.493 kb on - strand, within EX28DRAFT_2380at 2401.579 kb on + strand, within EX28DRAFT_2380

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,398,933 - +0.9
2,399,088 + EX28DRAFT_2378 0.18 -1.6
2,399,392 + EX28DRAFT_2378 0.49 +0.8
2,399,549 - EX28DRAFT_2378 0.64 +1.8
2,400,510 - EX28DRAFT_2379 0.76 -1.6
2,400,619 + EX28DRAFT_2379 0.90 -0.0
2,400,619 + EX28DRAFT_2379 0.90 -2.4
2,400,640 - -0.0
2,400,640 - -0.1
2,401,011 + +0.8
2,401,012 - +1.6
2,401,263 + EX28DRAFT_2380 0.12 +0.0
2,401,263 + EX28DRAFT_2380 0.12 +0.2
2,401,263 + EX28DRAFT_2380 0.12 -1.6
2,401,263 + EX28DRAFT_2380 0.12 -0.2
2,401,264 - EX28DRAFT_2380 0.12 -0.0
2,401,493 - EX28DRAFT_2380 0.18 -1.2
2,401,579 + EX28DRAFT_2380 0.21 +1.4

Or see this region's nucleotide sequence