Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2151

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2150 and EX28DRAFT_2151 are separated by 51 nucleotidesEX28DRAFT_2151 and EX28DRAFT_2152 are separated by 226 nucleotidesEX28DRAFT_2152 and EX28DRAFT_2153 are separated by 86 nucleotides EX28DRAFT_2150: EX28DRAFT_2150 - PTS system, lactose/cellobiose family IIC component, at 2,174,457 to 2,175,779 _2150 EX28DRAFT_2151: EX28DRAFT_2151 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 2,175,831 to 2,177,207 _2151 EX28DRAFT_2152: EX28DRAFT_2152 - Bacterial regulatory proteins, luxR family, at 2,177,434 to 2,178,033 _2152 EX28DRAFT_2153: EX28DRAFT_2153 - PapG chaperone-binding domain, at 2,178,120 to 2,178,902 _2153 Position (kb) 2175 2176 2177 2178Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2174.904 kb on - strand, within EX28DRAFT_2150at 2174.913 kb on - strand, within EX28DRAFT_2150at 2175.046 kb on + strand, within EX28DRAFT_2150at 2175.113 kb on + strand, within EX28DRAFT_2150at 2175.113 kb on + strand, within EX28DRAFT_2150at 2175.114 kb on - strand, within EX28DRAFT_2150at 2175.114 kb on - strand, within EX28DRAFT_2150at 2175.398 kb on + strand, within EX28DRAFT_2150at 2175.570 kb on - strand, within EX28DRAFT_2150at 2175.786 kb on + strandat 2175.832 kb on + strandat 2175.832 kb on + strandat 2175.833 kb on - strandat 2175.833 kb on - strandat 2175.851 kb on + strandat 2175.851 kb on + strandat 2175.878 kb on - strandat 2175.934 kb on + strandat 2175.934 kb on + strandat 2175.935 kb on - strandat 2175.935 kb on - strandat 2176.055 kb on + strand, within EX28DRAFT_2151at 2176.095 kb on - strand, within EX28DRAFT_2151at 2176.271 kb on - strand, within EX28DRAFT_2151at 2176.273 kb on + strand, within EX28DRAFT_2151at 2176.274 kb on - strand, within EX28DRAFT_2151at 2176.274 kb on - strand, within EX28DRAFT_2151at 2176.274 kb on - strand, within EX28DRAFT_2151at 2176.328 kb on - strand, within EX28DRAFT_2151at 2176.330 kb on + strand, within EX28DRAFT_2151at 2176.343 kb on + strand, within EX28DRAFT_2151at 2176.344 kb on - strand, within EX28DRAFT_2151at 2176.344 kb on - strand, within EX28DRAFT_2151at 2176.346 kb on - strand, within EX28DRAFT_2151at 2176.346 kb on - strand, within EX28DRAFT_2151at 2176.374 kb on + strand, within EX28DRAFT_2151at 2176.375 kb on - strand, within EX28DRAFT_2151at 2176.390 kb on + strand, within EX28DRAFT_2151at 2176.395 kb on - strand, within EX28DRAFT_2151at 2176.492 kb on + strand, within EX28DRAFT_2151at 2176.598 kb on - strand, within EX28DRAFT_2151at 2176.628 kb on + strand, within EX28DRAFT_2151at 2176.628 kb on + strand, within EX28DRAFT_2151at 2176.629 kb on - strand, within EX28DRAFT_2151at 2176.676 kb on + strand, within EX28DRAFT_2151at 2176.676 kb on + strand, within EX28DRAFT_2151at 2176.677 kb on - strand, within EX28DRAFT_2151at 2176.677 kb on - strand, within EX28DRAFT_2151at 2176.678 kb on + strand, within EX28DRAFT_2151at 2176.742 kb on - strand, within EX28DRAFT_2151at 2176.829 kb on - strand, within EX28DRAFT_2151at 2177.050 kb on + strand, within EX28DRAFT_2151at 2177.051 kb on - strand, within EX28DRAFT_2151at 2177.108 kb on - strandat 2177.262 kb on - strandat 2177.324 kb on + strandat 2177.386 kb on + strandat 2177.411 kb on + strandat 2177.493 kb on - strandat 2177.589 kb on - strand, within EX28DRAFT_2152at 2177.807 kb on - strand, within EX28DRAFT_2152at 2178.047 kb on - strandat 2178.094 kb on + strandat 2178.122 kb on - strandat 2178.124 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,174,904 - EX28DRAFT_2150 0.34 +0.0
2,174,913 - EX28DRAFT_2150 0.34 +1.2
2,175,046 + EX28DRAFT_2150 0.45 +2.0
2,175,113 + EX28DRAFT_2150 0.50 -1.3
2,175,113 + EX28DRAFT_2150 0.50 -0.2
2,175,114 - EX28DRAFT_2150 0.50 -0.2
2,175,114 - EX28DRAFT_2150 0.50 +0.5
2,175,398 + EX28DRAFT_2150 0.71 -0.2
2,175,570 - EX28DRAFT_2150 0.84 +0.3
2,175,786 + -0.5
2,175,832 + +0.7
2,175,832 + +0.2
2,175,833 - -0.7
2,175,833 - +1.2
2,175,851 + +0.1
2,175,851 + -1.0
2,175,878 - +0.5
2,175,934 + +0.3
2,175,934 + +0.2
2,175,935 - +0.6
2,175,935 - +0.1
2,176,055 + EX28DRAFT_2151 0.16 +0.1
2,176,095 - EX28DRAFT_2151 0.19 -0.3
2,176,271 - EX28DRAFT_2151 0.32 +0.5
2,176,273 + EX28DRAFT_2151 0.32 +0.4
2,176,274 - EX28DRAFT_2151 0.32 -1.7
2,176,274 - EX28DRAFT_2151 0.32 -0.5
2,176,274 - EX28DRAFT_2151 0.32 -0.6
2,176,328 - EX28DRAFT_2151 0.36 +2.8
2,176,330 + EX28DRAFT_2151 0.36 -0.1
2,176,343 + EX28DRAFT_2151 0.37 -0.7
2,176,344 - EX28DRAFT_2151 0.37 -0.6
2,176,344 - EX28DRAFT_2151 0.37 +0.0
2,176,346 - EX28DRAFT_2151 0.37 -0.1
2,176,346 - EX28DRAFT_2151 0.37 +0.5
2,176,374 + EX28DRAFT_2151 0.39 -0.9
2,176,375 - EX28DRAFT_2151 0.40 -1.5
2,176,390 + EX28DRAFT_2151 0.41 -0.3
2,176,395 - EX28DRAFT_2151 0.41 -0.2
2,176,492 + EX28DRAFT_2151 0.48 +0.8
2,176,598 - EX28DRAFT_2151 0.56 -0.5
2,176,628 + EX28DRAFT_2151 0.58 +0.8
2,176,628 + EX28DRAFT_2151 0.58 +0.5
2,176,629 - EX28DRAFT_2151 0.58 +0.9
2,176,676 + EX28DRAFT_2151 0.61 +0.1
2,176,676 + EX28DRAFT_2151 0.61 -1.5
2,176,677 - EX28DRAFT_2151 0.61 -0.6
2,176,677 - EX28DRAFT_2151 0.61 -0.8
2,176,678 + EX28DRAFT_2151 0.62 -0.4
2,176,742 - EX28DRAFT_2151 0.66 +0.6
2,176,829 - EX28DRAFT_2151 0.72 -0.2
2,177,050 + EX28DRAFT_2151 0.89 +0.3
2,177,051 - EX28DRAFT_2151 0.89 -0.5
2,177,108 - -1.3
2,177,262 - -0.5
2,177,324 + -0.9
2,177,386 + -2.1
2,177,411 + -0.1
2,177,493 - +0.3
2,177,589 - EX28DRAFT_2152 0.26 -0.1
2,177,807 - EX28DRAFT_2152 0.62 -0.9
2,178,047 - -0.1
2,178,094 + +0.1
2,178,122 - +0.5
2,178,124 + +1.4

Or see this region's nucleotide sequence