Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1092 and EX28DRAFT_1093 are separated by 6 nucleotides EX28DRAFT_1093 and EX28DRAFT_1094 are separated by 10 nucleotides EX28DRAFT_1094 and EX28DRAFT_1095 overlap by 4 nucleotides
EX28DRAFT_1092: EX28DRAFT_1092 - Arabinose efflux permease, at 1,103,154 to 1,104,329
_1092
EX28DRAFT_1093: EX28DRAFT_1093 - uncharacterized peroxidase-related enzyme, at 1,104,336 to 1,105,427
_1093
EX28DRAFT_1094: EX28DRAFT_1094 - putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family, at 1,105,438 to 1,106,427
_1094
EX28DRAFT_1095: EX28DRAFT_1095 - ATPase components of various ABC-type transport systems, contain duplicated ATPase, at 1,106,424 to 1,108,031
_1095
Position (kb)
1104
1105
1106 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1103.424 kb on + strand, within EX28DRAFT_1092 at 1103.425 kb on - strand, within EX28DRAFT_1092 at 1103.475 kb on - strand, within EX28DRAFT_1092 at 1103.558 kb on + strand, within EX28DRAFT_1092 at 1103.626 kb on - strand, within EX28DRAFT_1092 at 1103.829 kb on - strand, within EX28DRAFT_1092 at 1104.044 kb on + strand, within EX28DRAFT_1092 at 1104.178 kb on - strand, within EX28DRAFT_1092 at 1104.209 kb on + strand, within EX28DRAFT_1092 at 1104.209 kb on + strand, within EX28DRAFT_1092 at 1104.276 kb on + strand at 1104.714 kb on - strand, within EX28DRAFT_1093 at 1105.207 kb on + strand, within EX28DRAFT_1093 at 1105.207 kb on + strand, within EX28DRAFT_1093 at 1105.208 kb on - strand, within EX28DRAFT_1093 at 1105.208 kb on - strand, within EX28DRAFT_1093 at 1105.208 kb on - strand, within EX28DRAFT_1093 at 1105.386 kb on - strand at 1105.427 kb on + strand at 1105.427 kb on + strand at 1105.427 kb on + strand at 1105.428 kb on - strand at 1105.428 kb on - strand at 1105.428 kb on - strand at 1105.458 kb on + strand at 1105.533 kb on + strand at 1105.534 kb on - strand at 1105.831 kb on + strand, within EX28DRAFT_1094 at 1105.832 kb on - strand, within EX28DRAFT_1094 at 1105.938 kb on + strand, within EX28DRAFT_1094
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,103,424 + EX28DRAFT_1092 0.23 +0.2 1,103,425 - EX28DRAFT_1092 0.23 -0.2 1,103,475 - EX28DRAFT_1092 0.27 -0.6 1,103,558 + EX28DRAFT_1092 0.34 +0.6 1,103,626 - EX28DRAFT_1092 0.40 -0.1 1,103,829 - EX28DRAFT_1092 0.57 +0.5 1,104,044 + EX28DRAFT_1092 0.76 -1.3 1,104,178 - EX28DRAFT_1092 0.87 -0.2 1,104,209 + EX28DRAFT_1092 0.90 -0.3 1,104,209 + EX28DRAFT_1092 0.90 -0.5 1,104,276 + -1.8 1,104,714 - EX28DRAFT_1093 0.35 -0.6 1,105,207 + EX28DRAFT_1093 0.80 -4.0 1,105,207 + EX28DRAFT_1093 0.80 -0.6 1,105,208 - EX28DRAFT_1093 0.80 -0.0 1,105,208 - EX28DRAFT_1093 0.80 -0.9 1,105,208 - EX28DRAFT_1093 0.80 -1.7 1,105,386 - -0.7 1,105,427 + +0.2 1,105,427 + -0.5 1,105,427 + +0.6 1,105,428 - -0.0 1,105,428 - -0.4 1,105,428 - -3.9 1,105,458 + -0.0 1,105,533 + -0.8 1,105,534 - -0.0 1,105,831 + EX28DRAFT_1094 0.40 -0.0 1,105,832 - EX28DRAFT_1094 0.40 +0.2 1,105,938 + EX28DRAFT_1094 0.51 +0.2
Or see this region's nucleotide sequence