Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1081

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1079 and EX28DRAFT_1080 overlap by 11 nucleotidesEX28DRAFT_1080 and EX28DRAFT_1081 are separated by 77 nucleotidesEX28DRAFT_1081 and EX28DRAFT_1082 are separated by 620 nucleotides EX28DRAFT_1079: EX28DRAFT_1079 - Transcriptional regulator, at 1,091,506 to 1,092,450 _1079 EX28DRAFT_1080: EX28DRAFT_1080 - Uncharacterized conserved protein, at 1,092,440 to 1,092,880 _1080 EX28DRAFT_1081: EX28DRAFT_1081 - Outer membrane protein (porin), at 1,092,958 to 1,094,040 _1081 EX28DRAFT_1082: EX28DRAFT_1082 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 1,094,661 to 1,095,605 _1082 Position (kb) 1092 1093 1094 1095Strain fitness (log2 ratio) -3 -2 -1 0 1at 1092.317 kb on + strand, within EX28DRAFT_1079at 1092.352 kb on + strand, within EX28DRAFT_1079at 1092.501 kb on + strand, within EX28DRAFT_1080at 1092.543 kb on + strand, within EX28DRAFT_1080at 1092.616 kb on - strand, within EX28DRAFT_1080at 1092.756 kb on + strand, within EX28DRAFT_1080at 1092.757 kb on - strand, within EX28DRAFT_1080at 1092.807 kb on + strand, within EX28DRAFT_1080at 1092.808 kb on - strand, within EX28DRAFT_1080at 1092.809 kb on + strand, within EX28DRAFT_1080at 1092.809 kb on + strand, within EX28DRAFT_1080at 1092.809 kb on + strand, within EX28DRAFT_1080at 1092.885 kb on + strandat 1092.913 kb on + strandat 1092.914 kb on - strandat 1092.985 kb on + strandat 1092.986 kb on - strandat 1092.986 kb on - strandat 1092.986 kb on - strandat 1093.061 kb on + strandat 1093.065 kb on + strandat 1093.065 kb on + strandat 1093.066 kb on - strandat 1093.066 kb on - strandat 1093.085 kb on + strand, within EX28DRAFT_1081at 1093.086 kb on - strand, within EX28DRAFT_1081at 1093.109 kb on + strand, within EX28DRAFT_1081at 1093.110 kb on - strand, within EX28DRAFT_1081at 1093.110 kb on - strand, within EX28DRAFT_1081at 1093.110 kb on - strand, within EX28DRAFT_1081at 1093.110 kb on - strand, within EX28DRAFT_1081at 1093.149 kb on + strand, within EX28DRAFT_1081at 1093.244 kb on + strand, within EX28DRAFT_1081at 1093.283 kb on + strand, within EX28DRAFT_1081at 1093.284 kb on - strand, within EX28DRAFT_1081at 1093.298 kb on + strand, within EX28DRAFT_1081at 1093.298 kb on + strand, within EX28DRAFT_1081at 1093.299 kb on - strand, within EX28DRAFT_1081at 1093.299 kb on - strand, within EX28DRAFT_1081at 1093.299 kb on - strand, within EX28DRAFT_1081at 1093.336 kb on + strand, within EX28DRAFT_1081at 1093.421 kb on + strand, within EX28DRAFT_1081at 1093.454 kb on + strand, within EX28DRAFT_1081at 1093.459 kb on - strand, within EX28DRAFT_1081at 1093.679 kb on + strand, within EX28DRAFT_1081at 1093.692 kb on - strand, within EX28DRAFT_1081at 1093.805 kb on + strand, within EX28DRAFT_1081at 1093.968 kb on - strandat 1094.143 kb on - strandat 1094.175 kb on - strandat 1094.309 kb on + strandat 1094.542 kb on - strandat 1094.580 kb on + strandat 1094.580 kb on + strandat 1094.638 kb on - strandat 1094.662 kb on + strandat 1094.663 kb on - strandat 1094.787 kb on - strand, within EX28DRAFT_1082at 1094.791 kb on + strand, within EX28DRAFT_1082at 1095.038 kb on + strand, within EX28DRAFT_1082at 1095.038 kb on + strand, within EX28DRAFT_1082

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,092,317 + EX28DRAFT_1079 0.86 -0.3
1,092,352 + EX28DRAFT_1079 0.90 +0.4
1,092,501 + EX28DRAFT_1080 0.14 -0.0
1,092,543 + EX28DRAFT_1080 0.23 +1.4
1,092,616 - EX28DRAFT_1080 0.40 +1.1
1,092,756 + EX28DRAFT_1080 0.72 +0.1
1,092,757 - EX28DRAFT_1080 0.72 -1.1
1,092,807 + EX28DRAFT_1080 0.83 -0.4
1,092,808 - EX28DRAFT_1080 0.83 +0.3
1,092,809 + EX28DRAFT_1080 0.84 -0.1
1,092,809 + EX28DRAFT_1080 0.84 -0.6
1,092,809 + EX28DRAFT_1080 0.84 -1.1
1,092,885 + +0.5
1,092,913 + -0.3
1,092,914 - +0.1
1,092,985 + +0.2
1,092,986 - -0.9
1,092,986 - +1.1
1,092,986 - -0.3
1,093,061 + -0.1
1,093,065 + -0.6
1,093,065 + -0.5
1,093,066 - +0.4
1,093,066 - +0.1
1,093,085 + EX28DRAFT_1081 0.12 -1.9
1,093,086 - EX28DRAFT_1081 0.12 -0.9
1,093,109 + EX28DRAFT_1081 0.14 -0.7
1,093,110 - EX28DRAFT_1081 0.14 +0.5
1,093,110 - EX28DRAFT_1081 0.14 +0.6
1,093,110 - EX28DRAFT_1081 0.14 -0.4
1,093,110 - EX28DRAFT_1081 0.14 -0.4
1,093,149 + EX28DRAFT_1081 0.18 +0.0
1,093,244 + EX28DRAFT_1081 0.26 -0.7
1,093,283 + EX28DRAFT_1081 0.30 -0.3
1,093,284 - EX28DRAFT_1081 0.30 -0.8
1,093,298 + EX28DRAFT_1081 0.31 -0.9
1,093,298 + EX28DRAFT_1081 0.31 -0.2
1,093,299 - EX28DRAFT_1081 0.31 +0.3
1,093,299 - EX28DRAFT_1081 0.31 -3.0
1,093,299 - EX28DRAFT_1081 0.31 -0.1
1,093,336 + EX28DRAFT_1081 0.35 +0.2
1,093,421 + EX28DRAFT_1081 0.43 -1.5
1,093,454 + EX28DRAFT_1081 0.46 +1.0
1,093,459 - EX28DRAFT_1081 0.46 +0.1
1,093,679 + EX28DRAFT_1081 0.67 -0.5
1,093,692 - EX28DRAFT_1081 0.68 +0.6
1,093,805 + EX28DRAFT_1081 0.78 +0.3
1,093,968 - +0.3
1,094,143 - -2.1
1,094,175 - -0.6
1,094,309 + +0.2
1,094,542 - -0.5
1,094,580 + -0.8
1,094,580 + +0.0
1,094,638 - -0.3
1,094,662 + +1.2
1,094,663 - +0.3
1,094,787 - EX28DRAFT_1082 0.13 -0.8
1,094,791 + EX28DRAFT_1082 0.14 -0.7
1,095,038 + EX28DRAFT_1082 0.40 -0.4
1,095,038 + EX28DRAFT_1082 0.40 +0.6

Or see this region's nucleotide sequence