Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0641

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0639 and EX28DRAFT_0640 overlap by 4 nucleotidesEX28DRAFT_0640 and EX28DRAFT_0641 overlap by 4 nucleotidesEX28DRAFT_0641 and EX28DRAFT_0642 are separated by 8 nucleotides EX28DRAFT_0639: EX28DRAFT_0639 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,023 to 633,739 _0639 EX28DRAFT_0640: EX28DRAFT_0640 - ABC-type branched-chain amino acid transport systems, ATPase component, at 633,736 to 634,611 _0640 EX28DRAFT_0641: EX28DRAFT_0641 - ABC-type branched-chain amino acid transport system, permease component, at 634,608 to 635,885 _0641 EX28DRAFT_0642: EX28DRAFT_0642 - Branched-chain amino acid ABC-type transport system, permease components, at 635,894 to 636,808 _0642 Position (kb) 634 635 636Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 633.740 kb on - strandat 633.826 kb on - strand, within EX28DRAFT_0640at 633.899 kb on - strand, within EX28DRAFT_0640at 633.902 kb on - strand, within EX28DRAFT_0640at 633.936 kb on + strand, within EX28DRAFT_0640at 633.952 kb on - strand, within EX28DRAFT_0640at 634.164 kb on + strand, within EX28DRAFT_0640at 634.203 kb on + strand, within EX28DRAFT_0640at 634.203 kb on + strand, within EX28DRAFT_0640at 634.204 kb on - strand, within EX28DRAFT_0640at 634.351 kb on - strand, within EX28DRAFT_0640at 634.419 kb on + strand, within EX28DRAFT_0640at 634.420 kb on - strand, within EX28DRAFT_0640at 634.424 kb on - strand, within EX28DRAFT_0640at 634.424 kb on - strand, within EX28DRAFT_0640at 634.448 kb on + strand, within EX28DRAFT_0640at 634.449 kb on - strand, within EX28DRAFT_0640at 634.468 kb on - strand, within EX28DRAFT_0640at 634.528 kb on + strandat 634.558 kb on - strandat 634.594 kb on + strandat 634.595 kb on - strandat 634.790 kb on + strand, within EX28DRAFT_0641at 634.791 kb on - strand, within EX28DRAFT_0641at 634.791 kb on - strand, within EX28DRAFT_0641at 634.876 kb on + strand, within EX28DRAFT_0641at 634.876 kb on + strand, within EX28DRAFT_0641at 634.956 kb on + strand, within EX28DRAFT_0641at 634.957 kb on - strand, within EX28DRAFT_0641at 635.039 kb on + strand, within EX28DRAFT_0641at 635.044 kb on + strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.045 kb on - strand, within EX28DRAFT_0641at 635.084 kb on + strand, within EX28DRAFT_0641at 635.085 kb on - strand, within EX28DRAFT_0641at 635.090 kb on + strand, within EX28DRAFT_0641at 635.111 kb on - strand, within EX28DRAFT_0641at 635.291 kb on - strand, within EX28DRAFT_0641at 635.392 kb on + strand, within EX28DRAFT_0641at 635.444 kb on - strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.506 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.539 kb on + strand, within EX28DRAFT_0641at 635.540 kb on - strand, within EX28DRAFT_0641at 635.588 kb on + strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641at 635.589 kb on - strand, within EX28DRAFT_0641at 635.632 kb on + strand, within EX28DRAFT_0641at 635.634 kb on + strand, within EX28DRAFT_0641at 635.765 kb on + strandat 636.247 kb on + strand, within EX28DRAFT_0642at 636.247 kb on + strand, within EX28DRAFT_0642at 636.248 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.358 kb on - strand, within EX28DRAFT_0642at 636.532 kb on - strand, within EX28DRAFT_0642at 636.663 kb on + strand, within EX28DRAFT_0642at 636.677 kb on - strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.678 kb on + strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.679 kb on - strand, within EX28DRAFT_0642at 636.771 kb on - strandat 636.779 kb on - strandat 636.779 kb on - strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.802 kb on + strandat 636.803 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strandat 636.858 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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633,740 - -0.5
633,826 - EX28DRAFT_0640 0.10 -0.8
633,899 - EX28DRAFT_0640 0.19 +0.9
633,902 - EX28DRAFT_0640 0.19 +2.0
633,936 + EX28DRAFT_0640 0.23 -0.1
633,952 - EX28DRAFT_0640 0.25 -0.0
634,164 + EX28DRAFT_0640 0.49 -0.7
634,203 + EX28DRAFT_0640 0.53 -0.5
634,203 + EX28DRAFT_0640 0.53 -0.1
634,204 - EX28DRAFT_0640 0.53 -1.3
634,351 - EX28DRAFT_0640 0.70 -0.0
634,419 + EX28DRAFT_0640 0.78 +0.0
634,420 - EX28DRAFT_0640 0.78 -0.2
634,424 - EX28DRAFT_0640 0.79 -0.1
634,424 - EX28DRAFT_0640 0.79 +1.1
634,448 + EX28DRAFT_0640 0.81 -1.2
634,449 - EX28DRAFT_0640 0.81 +0.2
634,468 - EX28DRAFT_0640 0.84 +0.1
634,528 + -0.8
634,558 - -1.6
634,594 + +0.5
634,595 - -1.0
634,790 + EX28DRAFT_0641 0.14 -0.5
634,791 - EX28DRAFT_0641 0.14 -0.6
634,791 - EX28DRAFT_0641 0.14 -1.4
634,876 + EX28DRAFT_0641 0.21 -0.3
634,876 + EX28DRAFT_0641 0.21 -0.4
634,956 + EX28DRAFT_0641 0.27 -0.1
634,957 - EX28DRAFT_0641 0.27 -0.1
635,039 + EX28DRAFT_0641 0.34 -0.2
635,044 + EX28DRAFT_0641 0.34 +0.1
635,045 - EX28DRAFT_0641 0.34 +1.0
635,045 - EX28DRAFT_0641 0.34 +0.0
635,045 - EX28DRAFT_0641 0.34 -0.4
635,084 + EX28DRAFT_0641 0.37 +0.5
635,085 - EX28DRAFT_0641 0.37 +1.5
635,090 + EX28DRAFT_0641 0.38 +0.0
635,111 - EX28DRAFT_0641 0.39 +0.2
635,291 - EX28DRAFT_0641 0.53 -1.1
635,392 + EX28DRAFT_0641 0.61 +0.3
635,444 - EX28DRAFT_0641 0.65 -2.0
635,506 + EX28DRAFT_0641 0.70 -0.3
635,506 + EX28DRAFT_0641 0.70 +1.3
635,506 + EX28DRAFT_0641 0.70 +0.4
635,539 + EX28DRAFT_0641 0.73 -0.2
635,539 + EX28DRAFT_0641 0.73 +0.0
635,540 - EX28DRAFT_0641 0.73 -3.0
635,588 + EX28DRAFT_0641 0.77 -1.2
635,589 - EX28DRAFT_0641 0.77 -0.5
635,589 - EX28DRAFT_0641 0.77 -0.4
635,632 + EX28DRAFT_0641 0.80 +0.3
635,634 + EX28DRAFT_0641 0.80 -0.2
635,765 + +1.2
636,247 + EX28DRAFT_0642 0.39 -2.0
636,247 + EX28DRAFT_0642 0.39 +0.5
636,248 - EX28DRAFT_0642 0.39 +0.1
636,358 - EX28DRAFT_0642 0.51 -3.2
636,358 - EX28DRAFT_0642 0.51 -0.8
636,532 - EX28DRAFT_0642 0.70 +0.5
636,663 + EX28DRAFT_0642 0.84 -0.8
636,677 - EX28DRAFT_0642 0.86 +1.9
636,678 + EX28DRAFT_0642 0.86 +0.9
636,678 + EX28DRAFT_0642 0.86 -1.7
636,678 + EX28DRAFT_0642 0.86 +0.5
636,679 - EX28DRAFT_0642 0.86 +0.0
636,679 - EX28DRAFT_0642 0.86 +0.2
636,679 - EX28DRAFT_0642 0.86 -0.8
636,679 - EX28DRAFT_0642 0.86 +0.9
636,771 - +0.3
636,779 - -0.6
636,779 - -1.7
636,802 + +0.1
636,802 + -1.4
636,802 + +0.3
636,803 - +0.1
636,858 - -0.2
636,858 - -0.2
636,858 - +0.7

Or see this region's nucleotide sequence