Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0453 and EX28DRAFT_0454 are separated by 10 nucleotides EX28DRAFT_0454 and EX28DRAFT_0455 are separated by 827 nucleotides
EX28DRAFT_0453: EX28DRAFT_0453 - YadA-like C-terminal region/Collagen triple helix repeat (20 copies), at 436,231 to 437,082
_0453
EX28DRAFT_0454: EX28DRAFT_0454 - hypothetical protein, at 437,093 to 437,314
_0454
EX28DRAFT_0455: EX28DRAFT_0455 - Phage integrase family, at 438,142 to 439,500
_0455
Position (kb) 437
438 Strain fitness (log2 ratio) -2
-1
0
1 at 436.111 kb on + strand at 436.115 kb on + strand at 436.129 kb on - strand at 436.131 kb on - strand at 436.142 kb on + strand at 436.146 kb on + strand at 436.147 kb on - strand at 436.171 kb on - strand at 436.174 kb on - strand at 436.208 kb on + strand at 436.309 kb on - strand at 436.309 kb on - strand at 436.361 kb on + strand, within EX28DRAFT_0453 at 436.361 kb on + strand, within EX28DRAFT_0453 at 436.414 kb on + strand, within EX28DRAFT_0453 at 436.464 kb on + strand, within EX28DRAFT_0453 at 436.467 kb on + strand, within EX28DRAFT_0453 at 436.507 kb on - strand, within EX28DRAFT_0453 at 436.515 kb on + strand, within EX28DRAFT_0453 at 436.529 kb on - strand, within EX28DRAFT_0453 at 436.584 kb on + strand, within EX28DRAFT_0453 at 436.584 kb on + strand, within EX28DRAFT_0453 at 436.597 kb on - strand, within EX28DRAFT_0453 at 436.785 kb on + strand, within EX28DRAFT_0453 at 436.831 kb on + strand, within EX28DRAFT_0453 at 436.831 kb on + strand, within EX28DRAFT_0453 at 436.832 kb on - strand, within EX28DRAFT_0453 at 436.832 kb on - strand, within EX28DRAFT_0453 at 436.900 kb on - strand, within EX28DRAFT_0453 at 436.900 kb on - strand, within EX28DRAFT_0453 at 436.914 kb on + strand, within EX28DRAFT_0453 at 436.984 kb on - strand, within EX28DRAFT_0453 at 437.058 kb on + strand at 437.108 kb on - strand at 437.167 kb on + strand, within EX28DRAFT_0454 at 437.192 kb on - strand, within EX28DRAFT_0454 at 437.203 kb on + strand, within EX28DRAFT_0454 at 437.306 kb on - strand at 437.786 kb on + strand at 437.806 kb on + strand at 437.948 kb on - strand at 438.024 kb on + strand at 438.187 kb on + strand at 438.188 kb on - strand at 438.188 kb on - strand at 438.191 kb on - strand at 438.191 kb on - strand at 438.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 436,111 + +0.3 436,115 + -0.7 436,129 - +0.2 436,131 - -1.1 436,142 + +0.9 436,146 + -0.8 436,147 - -1.4 436,171 - -0.0 436,174 - +0.2 436,208 + -0.0 436,309 - +0.4 436,309 - -1.9 436,361 + EX28DRAFT_0453 0.15 +0.4 436,361 + EX28DRAFT_0453 0.15 -0.3 436,414 + EX28DRAFT_0453 0.21 +0.7 436,464 + EX28DRAFT_0453 0.27 -0.1 436,467 + EX28DRAFT_0453 0.28 -0.1 436,507 - EX28DRAFT_0453 0.32 +1.7 436,515 + EX28DRAFT_0453 0.33 +1.1 436,529 - EX28DRAFT_0453 0.35 +0.5 436,584 + EX28DRAFT_0453 0.41 +1.6 436,584 + EX28DRAFT_0453 0.41 -0.2 436,597 - EX28DRAFT_0453 0.43 +0.6 436,785 + EX28DRAFT_0453 0.65 +0.5 436,831 + EX28DRAFT_0453 0.70 -0.1 436,831 + EX28DRAFT_0453 0.70 -0.4 436,832 - EX28DRAFT_0453 0.71 -0.2 436,832 - EX28DRAFT_0453 0.71 -0.6 436,900 - EX28DRAFT_0453 0.79 -1.6 436,900 - EX28DRAFT_0453 0.79 -0.3 436,914 + EX28DRAFT_0453 0.80 -0.7 436,984 - EX28DRAFT_0453 0.88 -0.2 437,058 + -0.1 437,108 - -1.3 437,167 + EX28DRAFT_0454 0.33 -0.1 437,192 - EX28DRAFT_0454 0.45 -0.8 437,203 + EX28DRAFT_0454 0.50 -0.5 437,306 - +0.9 437,786 + +0.1 437,806 + -1.4 437,948 - +1.2 438,024 + +1.4 438,187 + +0.1 438,188 - +0.8 438,188 - +0.6 438,191 - -1.9 438,191 - +0.2 438,221 - +0.2
Or see this region's nucleotide sequence