Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0436

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0435 and EX28DRAFT_0436 are separated by 217 nucleotidesEX28DRAFT_0436 and EX28DRAFT_0437 overlap by 7 nucleotidesEX28DRAFT_0437 and EX28DRAFT_0438 are separated by 46 nucleotides EX28DRAFT_0435: EX28DRAFT_0435 - Predicted transcriptional regulators, at 415,398 to 416,138 _0435 EX28DRAFT_0436: EX28DRAFT_0436 - Putative regulator of cell autolysis, at 416,356 to 418,041 _0436 EX28DRAFT_0437: EX28DRAFT_0437 - two component transcriptional regulator, LytTR family, at 418,035 to 418,754 _0437 EX28DRAFT_0438: EX28DRAFT_0438 - Uncharacterized protein conserved in bacteria, at 418,801 to 419,271 _0438 Position (kb) 416 417 418 419Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 415.357 kb on + strandat 415.358 kb on - strandat 415.358 kb on - strandat 415.389 kb on + strandat 415.389 kb on + strandat 415.390 kb on - strandat 415.533 kb on - strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.693 kb on + strand, within EX28DRAFT_0435at 415.694 kb on - strand, within EX28DRAFT_0435at 415.694 kb on - strand, within EX28DRAFT_0435at 415.694 kb on - strand, within EX28DRAFT_0435at 416.049 kb on - strand, within EX28DRAFT_0435at 416.049 kb on - strand, within EX28DRAFT_0435at 416.121 kb on + strandat 416.121 kb on + strandat 416.122 kb on - strandat 416.128 kb on + strandat 416.170 kb on - strandat 416.175 kb on + strandat 416.175 kb on + strandat 416.175 kb on + strandat 416.306 kb on - strandat 416.322 kb on - strandat 416.322 kb on - strandat 416.355 kb on + strandat 416.355 kb on + strandat 416.355 kb on + strandat 416.359 kb on + strandat 416.359 kb on + strandat 416.359 kb on + strandat 416.469 kb on - strandat 416.482 kb on - strandat 416.508 kb on + strandat 416.734 kb on + strand, within EX28DRAFT_0436at 416.734 kb on + strand, within EX28DRAFT_0436at 416.734 kb on + strand, within EX28DRAFT_0436at 416.734 kb on + strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.735 kb on - strand, within EX28DRAFT_0436at 416.878 kb on - strand, within EX28DRAFT_0436at 416.898 kb on - strand, within EX28DRAFT_0436at 416.931 kb on + strand, within EX28DRAFT_0436at 416.932 kb on - strand, within EX28DRAFT_0436at 416.932 kb on - strand, within EX28DRAFT_0436at 416.965 kb on + strand, within EX28DRAFT_0436at 416.965 kb on + strand, within EX28DRAFT_0436at 416.965 kb on + strand, within EX28DRAFT_0436at 416.966 kb on - strand, within EX28DRAFT_0436at 416.966 kb on - strand, within EX28DRAFT_0436at 416.966 kb on - strand, within EX28DRAFT_0436at 416.967 kb on + strand, within EX28DRAFT_0436at 416.968 kb on - strand, within EX28DRAFT_0436at 417.036 kb on + strand, within EX28DRAFT_0436at 417.073 kb on + strand, within EX28DRAFT_0436at 417.187 kb on - strand, within EX28DRAFT_0436at 417.471 kb on + strand, within EX28DRAFT_0436at 417.734 kb on - strand, within EX28DRAFT_0436at 417.765 kb on + strand, within EX28DRAFT_0436at 417.766 kb on - strand, within EX28DRAFT_0436at 417.766 kb on - strand, within EX28DRAFT_0436at 417.873 kb on + strandat 417.873 kb on + strandat 417.886 kb on + strandat 418.010 kb on + strandat 418.039 kb on + strandat 418.039 kb on + strandat 418.112 kb on + strand, within EX28DRAFT_0437at 418.113 kb on - strand, within EX28DRAFT_0437at 418.115 kb on - strand, within EX28DRAFT_0437at 418.330 kb on + strand, within EX28DRAFT_0437at 418.331 kb on - strand, within EX28DRAFT_0437at 418.471 kb on - strand, within EX28DRAFT_0437at 418.800 kb on + strandat 418.800 kb on + strandat 418.801 kb on - strandat 418.805 kb on + strandat 418.805 kb on + strandat 418.810 kb on - strandat 418.855 kb on - strand, within EX28DRAFT_0438at 418.996 kb on + strand, within EX28DRAFT_0438at 418.997 kb on - strand, within EX28DRAFT_0438

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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415,357 + -2.9
415,358 - -0.6
415,358 - +0.1
415,389 + -0.0
415,389 + -0.5
415,390 - -0.6
415,533 - EX28DRAFT_0435 0.18 +0.4
415,693 + EX28DRAFT_0435 0.40 -0.6
415,693 + EX28DRAFT_0435 0.40 +1.4
415,693 + EX28DRAFT_0435 0.40 +0.3
415,693 + EX28DRAFT_0435 0.40 -0.1
415,694 - EX28DRAFT_0435 0.40 +0.1
415,694 - EX28DRAFT_0435 0.40 +0.1
415,694 - EX28DRAFT_0435 0.40 +0.8
416,049 - EX28DRAFT_0435 0.88 +1.4
416,049 - EX28DRAFT_0435 0.88 +2.2
416,121 + +0.8
416,121 + -0.5
416,122 - -0.6
416,128 + -0.3
416,170 - +0.5
416,175 + -0.8
416,175 + +0.8
416,175 + +0.1
416,306 - +0.5
416,322 - -1.1
416,322 - -2.2
416,355 + -0.7
416,355 + +0.6
416,355 + -0.4
416,359 + +2.2
416,359 + +0.4
416,359 + -0.3
416,469 - -2.6
416,482 - -3.4
416,508 + +0.1
416,734 + EX28DRAFT_0436 0.22 +0.4
416,734 + EX28DRAFT_0436 0.22 -0.3
416,734 + EX28DRAFT_0436 0.22 +0.1
416,734 + EX28DRAFT_0436 0.22 +1.7
416,735 - EX28DRAFT_0436 0.22 -1.4
416,735 - EX28DRAFT_0436 0.22 +0.1
416,735 - EX28DRAFT_0436 0.22 +0.4
416,735 - EX28DRAFT_0436 0.22 +0.0
416,878 - EX28DRAFT_0436 0.31 -0.3
416,898 - EX28DRAFT_0436 0.32 +0.1
416,931 + EX28DRAFT_0436 0.34 +0.4
416,932 - EX28DRAFT_0436 0.34 +0.1
416,932 - EX28DRAFT_0436 0.34 -0.7
416,965 + EX28DRAFT_0436 0.36 +0.6
416,965 + EX28DRAFT_0436 0.36 -0.4
416,965 + EX28DRAFT_0436 0.36 +0.4
416,966 - EX28DRAFT_0436 0.36 -1.4
416,966 - EX28DRAFT_0436 0.36 +0.6
416,966 - EX28DRAFT_0436 0.36 +0.4
416,967 + EX28DRAFT_0436 0.36 +0.8
416,968 - EX28DRAFT_0436 0.36 -0.3
417,036 + EX28DRAFT_0436 0.40 +0.2
417,073 + EX28DRAFT_0436 0.43 +0.6
417,187 - EX28DRAFT_0436 0.49 -1.0
417,471 + EX28DRAFT_0436 0.66 +0.3
417,734 - EX28DRAFT_0436 0.82 +0.4
417,765 + EX28DRAFT_0436 0.84 +0.4
417,766 - EX28DRAFT_0436 0.84 +0.6
417,766 - EX28DRAFT_0436 0.84 -1.1
417,873 + +1.1
417,873 + +2.0
417,886 + +0.3
418,010 + +0.7
418,039 + -0.2
418,039 + -0.2
418,112 + EX28DRAFT_0437 0.11 -0.2
418,113 - EX28DRAFT_0437 0.11 +0.2
418,115 - EX28DRAFT_0437 0.11 -1.1
418,330 + EX28DRAFT_0437 0.41 +0.6
418,331 - EX28DRAFT_0437 0.41 +0.4
418,471 - EX28DRAFT_0437 0.61 -0.6
418,800 + +1.1
418,800 + -0.1
418,801 - -0.4
418,805 + +0.3
418,805 + -1.3
418,810 - +0.1
418,855 - EX28DRAFT_0438 0.11 -0.1
418,996 + EX28DRAFT_0438 0.41 -2.4
418,997 - EX28DRAFT_0438 0.42 +0.7

Or see this region's nucleotide sequence