Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0063 and EX28DRAFT_0064 are separated by 35 nucleotides EX28DRAFT_0064 and EX28DRAFT_0065 are separated by 69 nucleotides EX28DRAFT_0065 and EX28DRAFT_0066 are separated by 204 nucleotides
EX28DRAFT_0063: EX28DRAFT_0063 - Acyl-CoA synthetase (NDP forming), at 3,648 to 6,311
_0063
EX28DRAFT_0064: EX28DRAFT_0064 - Uncharacterized conserved protein, at 6,347 to 7,045
_0064
EX28DRAFT_0065: EX28DRAFT_0065 - thioredoxin, at 7,115 to 7,534
_0065
EX28DRAFT_0066: EX28DRAFT_0066 - rRNA methylases, at 7,739 to 8,869
_0066
Position (kb)
6
7
8 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5.693 kb on - strand, within EX28DRAFT_0063 at 6.017 kb on + strand, within EX28DRAFT_0063 at 6.018 kb on - strand, within EX28DRAFT_0063 at 6.018 kb on - strand, within EX28DRAFT_0063 at 6.018 kb on - strand, within EX28DRAFT_0063 at 6.069 kb on - strand at 6.083 kb on + strand at 6.158 kb on + strand at 6.159 kb on - strand at 6.160 kb on + strand at 6.160 kb on + strand at 6.160 kb on + strand at 6.161 kb on - strand at 6.191 kb on + strand at 6.349 kb on - strand at 6.386 kb on - strand at 6.409 kb on - strand at 6.706 kb on - strand, within EX28DRAFT_0064 at 6.706 kb on - strand, within EX28DRAFT_0064 at 6.727 kb on + strand, within EX28DRAFT_0064 at 6.728 kb on - strand, within EX28DRAFT_0064 at 6.965 kb on - strand, within EX28DRAFT_0064 at 7.439 kb on + strand, within EX28DRAFT_0065 at 7.502 kb on - strand at 7.523 kb on + strand at 7.523 kb on + strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.524 kb on - strand at 7.529 kb on - strand at 7.534 kb on + strand at 7.535 kb on - strand at 7.539 kb on - strand at 7.590 kb on + strand at 7.590 kb on + strand at 7.590 kb on + strand at 7.591 kb on - strand at 7.595 kb on + strand at 7.596 kb on - strand at 7.599 kb on + strand at 7.599 kb on + strand at 7.600 kb on - strand at 7.600 kb on - strand at 7.627 kb on + strand at 7.637 kb on - strand at 7.652 kb on + strand at 7.653 kb on - strand at 7.653 kb on - strand at 7.676 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.784 kb on + strand at 7.785 kb on - strand at 7.785 kb on - strand at 7.810 kb on + strand at 7.907 kb on - strand, within EX28DRAFT_0066
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 5,693 - EX28DRAFT_0063 0.77 -0.2 6,017 + EX28DRAFT_0063 0.89 +0.1 6,018 - EX28DRAFT_0063 0.89 -0.2 6,018 - EX28DRAFT_0063 0.89 +0.2 6,018 - EX28DRAFT_0063 0.89 -0.1 6,069 - -2.0 6,083 + +2.3 6,158 + -0.1 6,159 - -0.8 6,160 + +0.8 6,160 + -0.2 6,160 + +2.0 6,161 - +1.8 6,191 + +0.4 6,349 - -0.6 6,386 - -0.7 6,409 - -0.6 6,706 - EX28DRAFT_0064 0.51 +0.7 6,706 - EX28DRAFT_0064 0.51 -0.4 6,727 + EX28DRAFT_0064 0.54 -0.6 6,728 - EX28DRAFT_0064 0.55 -0.4 6,965 - EX28DRAFT_0064 0.88 +0.4 7,439 + EX28DRAFT_0065 0.77 -0.5 7,502 - -0.3 7,523 + -1.0 7,523 + -0.4 7,524 - -0.7 7,524 - +2.1 7,524 - -0.3 7,529 - -1.3 7,534 + +0.4 7,535 - -0.4 7,539 - -0.7 7,590 + -0.5 7,590 + +0.7 7,590 + -0.1 7,591 - +0.2 7,595 + -0.2 7,596 - -0.2 7,599 + -0.6 7,599 + +0.6 7,600 - -0.7 7,600 - +0.1 7,627 + +1.3 7,637 - +1.0 7,652 + +0.1 7,653 - +0.2 7,653 - -0.6 7,676 + +0.2 7,784 + -1.3 7,784 + -0.0 7,784 + -0.1 7,784 + +0.1 7,784 + +1.8 7,784 + +1.1 7,784 + -0.1 7,784 + -0.2 7,785 - +1.6 7,785 - -1.1 7,810 + -1.4 7,907 - EX28DRAFT_0066 0.15 +0.1
Or see this region's nucleotide sequence