Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03905

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03360 and CCNA_03905 are separated by 49 nucleotidesCCNA_03905 and CCNA_03273 are separated by 161 nucleotidesCCNA_03273 and CCNA_03362 overlap by 14 nucleotides CCNA_03360: CCNA_03360 - tagatose-1,6-bisphosphate aldolase, at 3,538,659 to 3,539,750 _03360 CCNA_03905: CCNA_03905 - hypothetical protein, at 3,539,800 to 3,540,480 _03905 CCNA_03273: CCNA_03273 - hypothetical protein, at 3,540,642 to 3,541,286 _03273 CCNA_03362: CCNA_03362 - ECF-family RNA polymerase sigma factor, at 3,541,273 to 3,541,812 _03362 Position (kb) 3539 3540 3541Strain fitness (log2 ratio) -2 -1 0 1at 3539.714 kb on + strandat 3539.778 kb on + strandat 3539.791 kb on - strandat 3539.791 kb on - strandat 3539.791 kb on - strandat 3539.816 kb on + strandat 3539.821 kb on + strandat 3539.840 kb on + strandat 3539.840 kb on + strandat 3539.840 kb on + strandat 3539.848 kb on - strandat 3539.848 kb on - strandat 3539.864 kb on + strandat 3539.869 kb on + strand, within CCNA_03905at 3539.885 kb on + strand, within CCNA_03905at 3539.890 kb on + strand, within CCNA_03905at 3539.893 kb on - strand, within CCNA_03905at 3539.904 kb on + strand, within CCNA_03905at 3539.918 kb on - strand, within CCNA_03905at 3539.926 kb on + strand, within CCNA_03905at 3539.934 kb on - strand, within CCNA_03905at 3539.952 kb on + strand, within CCNA_03905at 3540.008 kb on + strand, within CCNA_03905at 3540.042 kb on - strand, within CCNA_03905at 3540.066 kb on + strand, within CCNA_03905at 3540.081 kb on + strand, within CCNA_03905at 3540.097 kb on + strand, within CCNA_03905at 3540.097 kb on + strand, within CCNA_03905at 3540.105 kb on - strand, within CCNA_03905at 3540.105 kb on - strand, within CCNA_03905at 3540.115 kb on + strand, within CCNA_03905at 3540.115 kb on + strand, within CCNA_03905at 3540.137 kb on - strand, within CCNA_03905at 3540.162 kb on + strand, within CCNA_03905at 3540.170 kb on - strand, within CCNA_03905at 3540.214 kb on - strand, within CCNA_03905at 3540.255 kb on + strand, within CCNA_03905at 3540.257 kb on - strand, within CCNA_03905at 3540.263 kb on - strand, within CCNA_03905at 3540.325 kb on + strand, within CCNA_03905at 3540.330 kb on + strand, within CCNA_03905at 3540.338 kb on - strand, within CCNA_03905at 3540.352 kb on + strand, within CCNA_03905at 3540.352 kb on + strand, within CCNA_03905at 3540.360 kb on - strand, within CCNA_03905at 3540.360 kb on - strand, within CCNA_03905at 3540.395 kb on + strand, within CCNA_03905at 3540.396 kb on + strand, within CCNA_03905at 3540.415 kb on - strandat 3540.417 kb on - strandat 3540.464 kb on - strandat 3540.464 kb on - strandat 3540.498 kb on + strandat 3540.499 kb on - strandat 3540.526 kb on + strandat 3540.649 kb on - strandat 3540.673 kb on + strandat 3540.681 kb on - strandat 3540.706 kb on - strandat 3540.708 kb on + strand, within CCNA_03273at 3540.716 kb on - strand, within CCNA_03273at 3540.716 kb on - strand, within CCNA_03273at 3540.727 kb on + strand, within CCNA_03273at 3540.750 kb on - strand, within CCNA_03273at 3540.762 kb on - strand, within CCNA_03273at 3540.824 kb on + strand, within CCNA_03273at 3540.827 kb on - strand, within CCNA_03273at 3540.915 kb on - strand, within CCNA_03273at 3540.949 kb on - strand, within CCNA_03273at 3540.969 kb on - strand, within CCNA_03273at 3540.970 kb on - strand, within CCNA_03273at 3541.003 kb on - strand, within CCNA_03273at 3541.025 kb on - strand, within CCNA_03273at 3541.094 kb on - strand, within CCNA_03273at 3541.110 kb on - strand, within CCNA_03273at 3541.115 kb on - strand, within CCNA_03273at 3541.116 kb on + strand, within CCNA_03273at 3541.131 kb on + strand, within CCNA_03273at 3541.161 kb on - strand, within CCNA_03273at 3541.188 kb on + strand, within CCNA_03273at 3541.196 kb on - strand, within CCNA_03273at 3541.196 kb on - strand, within CCNA_03273at 3541.196 kb on - strand, within CCNA_03273at 3541.196 kb on - strand, within CCNA_03273at 3541.295 kb on + strandat 3541.403 kb on - strand, within CCNA_03362at 3541.438 kb on + strand, within CCNA_03362at 3541.441 kb on - strand, within CCNA_03362at 3541.446 kb on - strand, within CCNA_03362at 3541.450 kb on + strand, within CCNA_03362at 3541.453 kb on - strand, within CCNA_03362at 3541.473 kb on + strand, within CCNA_03362

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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3,539,714 + +0.4
3,539,778 + +0.5
3,539,791 - -0.0
3,539,791 - -0.1
3,539,791 - -0.3
3,539,816 + +0.3
3,539,821 + -0.0
3,539,840 + -0.9
3,539,840 + +0.3
3,539,840 + -0.1
3,539,848 - +0.4
3,539,848 - +0.2
3,539,864 + +0.3
3,539,869 + CCNA_03905 0.10 +0.2
3,539,885 + CCNA_03905 0.12 +0.4
3,539,890 + CCNA_03905 0.13 +0.4
3,539,893 - CCNA_03905 0.14 +0.3
3,539,904 + CCNA_03905 0.15 +0.5
3,539,918 - CCNA_03905 0.17 +0.2
3,539,926 + CCNA_03905 0.19 -0.2
3,539,934 - CCNA_03905 0.20 +0.5
3,539,952 + CCNA_03905 0.22 +0.6
3,540,008 + CCNA_03905 0.31 +1.5
3,540,042 - CCNA_03905 0.36 +0.5
3,540,066 + CCNA_03905 0.39 +0.6
3,540,081 + CCNA_03905 0.41 +0.4
3,540,097 + CCNA_03905 0.44 -0.2
3,540,097 + CCNA_03905 0.44 +0.4
3,540,105 - CCNA_03905 0.45 +0.8
3,540,105 - CCNA_03905 0.45 +0.4
3,540,115 + CCNA_03905 0.46 -0.7
3,540,115 + CCNA_03905 0.46 +0.2
3,540,137 - CCNA_03905 0.49 -0.3
3,540,162 + CCNA_03905 0.53 -0.2
3,540,170 - CCNA_03905 0.54 +0.2
3,540,214 - CCNA_03905 0.61 +0.0
3,540,255 + CCNA_03905 0.67 -0.1
3,540,257 - CCNA_03905 0.67 +0.7
3,540,263 - CCNA_03905 0.68 +0.0
3,540,325 + CCNA_03905 0.77 -0.2
3,540,330 + CCNA_03905 0.78 -0.3
3,540,338 - CCNA_03905 0.79 +0.3
3,540,352 + CCNA_03905 0.81 -0.9
3,540,352 + CCNA_03905 0.81 -1.4
3,540,360 - CCNA_03905 0.82 +1.7
3,540,360 - CCNA_03905 0.82 +0.1
3,540,395 + CCNA_03905 0.87 +0.3
3,540,396 + CCNA_03905 0.88 -0.3
3,540,415 - +0.3
3,540,417 - +0.3
3,540,464 - -0.1
3,540,464 - -0.0
3,540,498 + -0.1
3,540,499 - +0.5
3,540,526 + +0.6
3,540,649 - -0.2
3,540,673 + -0.2
3,540,681 - -1.3
3,540,706 - -1.2
3,540,708 + CCNA_03273 0.10 -1.4
3,540,716 - CCNA_03273 0.11 -1.4
3,540,716 - CCNA_03273 0.11 -1.8
3,540,727 + CCNA_03273 0.13 +0.3
3,540,750 - CCNA_03273 0.17 -0.7
3,540,762 - CCNA_03273 0.19 -1.4
3,540,824 + CCNA_03273 0.28 -0.6
3,540,827 - CCNA_03273 0.29 +0.8
3,540,915 - CCNA_03273 0.42 -1.4
3,540,949 - CCNA_03273 0.48 -0.5
3,540,969 - CCNA_03273 0.51 -0.1
3,540,970 - CCNA_03273 0.51 -0.8
3,541,003 - CCNA_03273 0.56 -0.7
3,541,025 - CCNA_03273 0.59 -0.5
3,541,094 - CCNA_03273 0.70 -0.2
3,541,110 - CCNA_03273 0.73 -1.2
3,541,115 - CCNA_03273 0.73 -0.4
3,541,116 + CCNA_03273 0.73 -0.2
3,541,131 + CCNA_03273 0.76 +0.2
3,541,161 - CCNA_03273 0.80 -1.0
3,541,188 + CCNA_03273 0.85 +0.8
3,541,196 - CCNA_03273 0.86 +0.1
3,541,196 - CCNA_03273 0.86 -1.4
3,541,196 - CCNA_03273 0.86 -1.9
3,541,196 - CCNA_03273 0.86 -0.5
3,541,295 + +0.2
3,541,403 - CCNA_03362 0.24 +0.2
3,541,438 + CCNA_03362 0.31 +0.9
3,541,441 - CCNA_03362 0.31 -0.0
3,541,446 - CCNA_03362 0.32 -0.1
3,541,450 + CCNA_03362 0.33 +0.5
3,541,453 - CCNA_03362 0.33 -1.1
3,541,473 + CCNA_03362 0.37 -0.7

Or see this region's nucleotide sequence