Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03587

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03585 and CCNA_03586 overlap by 4 nucleotidesCCNA_03586 and CCNA_03587 are separated by 59 nucleotidesCCNA_03587 and CCNA_03588 are separated by 89 nucleotides CCNA_03585: CCNA_03585 - chemotaxis receiver domain protein CheYIV, at 3,740,756 to 3,741,133 _03585 CCNA_03586: CCNA_03586 - chemotaxis protein methyltransferase, at 3,741,130 to 3,741,960 _03586 CCNA_03587: CCNA_03587 - entericidin B-like protein, at 3,742,020 to 3,742,163 _03587 CCNA_03588: CCNA_03588 - two-component sensor histidine kinase PhyK, at 3,742,253 to 3,743,956 _03588 Position (kb) 3742 3743Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.022 kb on - strand, within CCNA_03585at 3741.024 kb on + strand, within CCNA_03585at 3741.024 kb on + strand, within CCNA_03585at 3741.032 kb on - strand, within CCNA_03585at 3741.032 kb on - strand, within CCNA_03585at 3741.070 kb on - strand, within CCNA_03585at 3741.079 kb on - strand, within CCNA_03585at 3741.081 kb on - strand, within CCNA_03585at 3741.127 kb on + strandat 3741.150 kb on - strandat 3741.151 kb on - strandat 3741.160 kb on + strandat 3741.168 kb on - strandat 3741.199 kb on + strandat 3741.258 kb on - strand, within CCNA_03586at 3741.259 kb on - strand, within CCNA_03586at 3741.273 kb on + strand, within CCNA_03586at 3741.281 kb on - strand, within CCNA_03586at 3741.309 kb on + strand, within CCNA_03586at 3741.309 kb on + strand, within CCNA_03586at 3741.317 kb on - strand, within CCNA_03586at 3741.374 kb on + strand, within CCNA_03586at 3741.508 kb on + strand, within CCNA_03586at 3741.528 kb on + strand, within CCNA_03586at 3741.541 kb on + strand, within CCNA_03586at 3741.744 kb on + strand, within CCNA_03586at 3741.759 kb on + strand, within CCNA_03586at 3741.793 kb on + strand, within CCNA_03586at 3741.897 kb on - strandat 3741.934 kb on + strandat 3741.987 kb on + strandat 3741.987 kb on + strandat 3742.005 kb on + strandat 3742.011 kb on + strandat 3742.013 kb on - strandat 3742.019 kb on - strandat 3742.107 kb on - strand, within CCNA_03587at 3742.179 kb on - strandat 3742.210 kb on - strandat 3742.218 kb on - strandat 3742.245 kb on + strandat 3742.263 kb on - strandat 3742.322 kb on + strandat 3742.354 kb on + strandat 3742.362 kb on - strandat 3742.372 kb on + strandat 3742.386 kb on + strandat 3742.417 kb on - strandat 3742.417 kb on - strandat 3742.417 kb on - strandat 3742.474 kb on + strand, within CCNA_03588at 3742.546 kb on + strand, within CCNA_03588at 3742.554 kb on - strand, within CCNA_03588at 3742.581 kb on + strand, within CCNA_03588at 3742.581 kb on + strand, within CCNA_03588at 3742.593 kb on + strand, within CCNA_03588at 3742.685 kb on + strand, within CCNA_03588at 3742.706 kb on - strand, within CCNA_03588at 3742.713 kb on + strand, within CCNA_03588at 3742.721 kb on - strand, within CCNA_03588at 3742.726 kb on - strand, within CCNA_03588at 3742.727 kb on - strand, within CCNA_03588at 3742.795 kb on + strand, within CCNA_03588at 3742.823 kb on - strand, within CCNA_03588at 3742.844 kb on + strand, within CCNA_03588at 3742.976 kb on + strand, within CCNA_03588at 3742.977 kb on + strand, within CCNA_03588at 3742.987 kb on + strand, within CCNA_03588at 3743.001 kb on - strand, within CCNA_03588at 3743.046 kb on - strand, within CCNA_03588at 3743.050 kb on + strand, within CCNA_03588at 3743.058 kb on - strand, within CCNA_03588

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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3,741,022 - CCNA_03585 0.70 +0.2
3,741,022 - CCNA_03585 0.70 -0.0
3,741,022 - CCNA_03585 0.70 +0.8
3,741,022 - CCNA_03585 0.70 +0.6
3,741,022 - CCNA_03585 0.70 +0.2
3,741,022 - CCNA_03585 0.70 +0.1
3,741,022 - CCNA_03585 0.70 -0.7
3,741,022 - CCNA_03585 0.70 +0.1
3,741,022 - CCNA_03585 0.70 -1.0
3,741,024 + CCNA_03585 0.71 -0.1
3,741,024 + CCNA_03585 0.71 +0.5
3,741,032 - CCNA_03585 0.73 -0.6
3,741,032 - CCNA_03585 0.73 +0.7
3,741,070 - CCNA_03585 0.83 -1.1
3,741,079 - CCNA_03585 0.85 -1.5
3,741,081 - CCNA_03585 0.86 -0.8
3,741,127 + +0.4
3,741,150 - +1.4
3,741,151 - +0.6
3,741,160 + -0.5
3,741,168 - -0.3
3,741,199 + +0.2
3,741,258 - CCNA_03586 0.15 +0.7
3,741,259 - CCNA_03586 0.16 -1.9
3,741,273 + CCNA_03586 0.17 +0.4
3,741,281 - CCNA_03586 0.18 +1.9
3,741,309 + CCNA_03586 0.22 -0.9
3,741,309 + CCNA_03586 0.22 +0.0
3,741,317 - CCNA_03586 0.23 -2.0
3,741,374 + CCNA_03586 0.29 +0.3
3,741,508 + CCNA_03586 0.45 +1.4
3,741,528 + CCNA_03586 0.48 +0.7
3,741,541 + CCNA_03586 0.49 +0.9
3,741,744 + CCNA_03586 0.74 -0.3
3,741,759 + CCNA_03586 0.76 +0.5
3,741,793 + CCNA_03586 0.80 +0.4
3,741,897 - -0.4
3,741,934 + -0.1
3,741,987 + +0.4
3,741,987 + +0.4
3,742,005 + +1.1
3,742,011 + -0.6
3,742,013 - -0.0
3,742,019 - +0.6
3,742,107 - CCNA_03587 0.60 -0.3
3,742,179 - +0.5
3,742,210 - +1.7
3,742,218 - -0.1
3,742,245 + -0.0
3,742,263 - +0.7
3,742,322 + -1.5
3,742,354 + +1.8
3,742,362 - -1.0
3,742,372 + +0.9
3,742,386 + +0.2
3,742,417 - +0.8
3,742,417 - -0.2
3,742,417 - +0.5
3,742,474 + CCNA_03588 0.13 +1.5
3,742,546 + CCNA_03588 0.17 -0.1
3,742,554 - CCNA_03588 0.18 -1.2
3,742,581 + CCNA_03588 0.19 +0.1
3,742,581 + CCNA_03588 0.19 +0.1
3,742,593 + CCNA_03588 0.20 -0.4
3,742,685 + CCNA_03588 0.25 +0.2
3,742,706 - CCNA_03588 0.27 +0.2
3,742,713 + CCNA_03588 0.27 -3.4
3,742,721 - CCNA_03588 0.27 +0.9
3,742,726 - CCNA_03588 0.28 +0.4
3,742,727 - CCNA_03588 0.28 +0.2
3,742,795 + CCNA_03588 0.32 -0.9
3,742,823 - CCNA_03588 0.33 -1.8
3,742,844 + CCNA_03588 0.35 +0.7
3,742,976 + CCNA_03588 0.42 -0.1
3,742,977 + CCNA_03588 0.42 +1.7
3,742,987 + CCNA_03588 0.43 -0.3
3,743,001 - CCNA_03588 0.44 +0.0
3,743,046 - CCNA_03588 0.47 -0.1
3,743,050 + CCNA_03588 0.47 +0.5
3,743,058 - CCNA_03588 0.47 -0.3

Or see this region's nucleotide sequence