Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03464

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03463 and CCNA_03464 are separated by 118 nucleotidesCCNA_03464 and CCNA_03465 are separated by 19 nucleotides CCNA_03463: CCNA_03463 - glycine cleavage system protein P, N-terminal domain, at 3,626,273 to 3,627,619 _03463 CCNA_03464: CCNA_03464 - glycine cleavage system H protein, at 3,627,738 to 3,628,103 _03464 CCNA_03465: CCNA_03465 - glycine cleavage system aminomethyltransferase T, at 3,628,123 to 3,629,250 _03465 Position (kb) 3627 3628 3629Strain fitness (log2 ratio) -2 -1 0 1 2at 3626.891 kb on + strand, within CCNA_03463at 3627.188 kb on - strand, within CCNA_03463at 3627.219 kb on - strand, within CCNA_03463at 3627.241 kb on - strand, within CCNA_03463at 3627.256 kb on - strand, within CCNA_03463at 3627.256 kb on - strand, within CCNA_03463at 3627.279 kb on + strand, within CCNA_03463at 3627.283 kb on + strand, within CCNA_03463at 3627.286 kb on + strand, within CCNA_03463at 3627.296 kb on + strand, within CCNA_03463at 3627.340 kb on + strand, within CCNA_03463at 3627.381 kb on + strand, within CCNA_03463at 3627.418 kb on - strand, within CCNA_03463at 3627.518 kb on + strandat 3627.526 kb on - strandat 3627.583 kb on - strandat 3627.600 kb on + strandat 3627.649 kb on - strandat 3627.665 kb on + strandat 3627.735 kb on + strandat 3627.743 kb on - strandat 3627.745 kb on + strandat 3627.774 kb on + strandat 3627.931 kb on + strand, within CCNA_03464at 3627.939 kb on - strand, within CCNA_03464at 3627.950 kb on - strand, within CCNA_03464at 3628.020 kb on - strand, within CCNA_03464at 3628.077 kb on - strandat 3628.080 kb on + strandat 3628.088 kb on - strandat 3628.089 kb on - strandat 3628.135 kb on + strandat 3628.152 kb on - strandat 3628.197 kb on - strandat 3628.202 kb on + strandat 3628.202 kb on + strandat 3628.210 kb on - strandat 3628.224 kb on + strandat 3628.308 kb on - strand, within CCNA_03465at 3628.365 kb on + strand, within CCNA_03465at 3628.365 kb on - strand, within CCNA_03465at 3628.407 kb on - strand, within CCNA_03465at 3628.431 kb on + strand, within CCNA_03465at 3628.471 kb on + strand, within CCNA_03465at 3628.471 kb on + strand, within CCNA_03465at 3628.471 kb on + strand, within CCNA_03465at 3628.479 kb on - strand, within CCNA_03465at 3628.517 kb on + strand, within CCNA_03465at 3628.517 kb on - strand, within CCNA_03465at 3628.569 kb on - strand, within CCNA_03465at 3628.607 kb on - strand, within CCNA_03465at 3628.609 kb on - strand, within CCNA_03465at 3628.656 kb on + strand, within CCNA_03465at 3628.668 kb on - strand, within CCNA_03465at 3628.674 kb on - strand, within CCNA_03465at 3628.700 kb on - strand, within CCNA_03465at 3628.702 kb on + strand, within CCNA_03465at 3628.702 kb on + strand, within CCNA_03465at 3628.702 kb on + strand, within CCNA_03465at 3628.778 kb on + strand, within CCNA_03465at 3628.814 kb on - strand, within CCNA_03465at 3628.816 kb on + strand, within CCNA_03465at 3628.888 kb on - strand, within CCNA_03465at 3628.899 kb on + strand, within CCNA_03465at 3628.902 kb on - strand, within CCNA_03465at 3628.922 kb on + strand, within CCNA_03465at 3628.922 kb on + strand, within CCNA_03465at 3628.930 kb on - strand, within CCNA_03465at 3628.952 kb on + strand, within CCNA_03465at 3628.967 kb on + strand, within CCNA_03465at 3628.967 kb on + strand, within CCNA_03465at 3628.975 kb on - strand, within CCNA_03465at 3628.975 kb on - strand, within CCNA_03465at 3629.056 kb on + strand, within CCNA_03465at 3629.064 kb on - strand, within CCNA_03465at 3629.064 kb on - strand, within CCNA_03465at 3629.080 kb on + strand, within CCNA_03465at 3629.080 kb on + strand, within CCNA_03465at 3629.083 kb on - strand, within CCNA_03465at 3629.102 kb on + strand, within CCNA_03465

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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3,626,891 + CCNA_03463 0.46 -0.9
3,627,188 - CCNA_03463 0.68 +0.1
3,627,219 - CCNA_03463 0.70 +1.2
3,627,241 - CCNA_03463 0.72 +0.0
3,627,256 - CCNA_03463 0.73 -0.2
3,627,256 - CCNA_03463 0.73 +0.7
3,627,279 + CCNA_03463 0.75 -0.5
3,627,283 + CCNA_03463 0.75 -0.9
3,627,286 + CCNA_03463 0.75 +0.9
3,627,296 + CCNA_03463 0.76 +0.1
3,627,340 + CCNA_03463 0.79 +0.6
3,627,381 + CCNA_03463 0.82 -1.0
3,627,418 - CCNA_03463 0.85 +1.0
3,627,518 + -0.0
3,627,526 - +0.0
3,627,583 - -0.5
3,627,600 + -0.3
3,627,649 - +0.4
3,627,665 + -0.2
3,627,735 + -1.3
3,627,743 - +0.2
3,627,745 + -0.3
3,627,774 + -1.3
3,627,931 + CCNA_03464 0.53 +0.7
3,627,939 - CCNA_03464 0.55 -0.5
3,627,950 - CCNA_03464 0.58 -0.5
3,628,020 - CCNA_03464 0.77 -1.1
3,628,077 - +0.4
3,628,080 + +0.0
3,628,088 - +1.0
3,628,089 - -0.9
3,628,135 + +0.7
3,628,152 - +0.0
3,628,197 - -0.2
3,628,202 + -1.4
3,628,202 + +1.6
3,628,210 - -0.1
3,628,224 + +0.1
3,628,308 - CCNA_03465 0.16 +0.2
3,628,365 + CCNA_03465 0.21 -0.5
3,628,365 - CCNA_03465 0.21 -0.1
3,628,407 - CCNA_03465 0.25 +0.6
3,628,431 + CCNA_03465 0.27 -1.3
3,628,471 + CCNA_03465 0.31 -2.2
3,628,471 + CCNA_03465 0.31 +1.3
3,628,471 + CCNA_03465 0.31 -1.2
3,628,479 - CCNA_03465 0.32 +0.3
3,628,517 + CCNA_03465 0.35 -0.1
3,628,517 - CCNA_03465 0.35 +0.0
3,628,569 - CCNA_03465 0.40 -0.4
3,628,607 - CCNA_03465 0.43 +0.1
3,628,609 - CCNA_03465 0.43 -0.0
3,628,656 + CCNA_03465 0.47 -1.0
3,628,668 - CCNA_03465 0.48 -0.4
3,628,674 - CCNA_03465 0.49 +0.2
3,628,700 - CCNA_03465 0.51 +0.1
3,628,702 + CCNA_03465 0.51 +0.4
3,628,702 + CCNA_03465 0.51 +0.7
3,628,702 + CCNA_03465 0.51 -1.5
3,628,778 + CCNA_03465 0.58 +0.3
3,628,814 - CCNA_03465 0.61 -0.1
3,628,816 + CCNA_03465 0.61 -0.3
3,628,888 - CCNA_03465 0.68 +0.3
3,628,899 + CCNA_03465 0.69 +0.3
3,628,902 - CCNA_03465 0.69 -0.6
3,628,922 + CCNA_03465 0.71 -2.2
3,628,922 + CCNA_03465 0.71 -1.1
3,628,930 - CCNA_03465 0.72 +0.4
3,628,952 + CCNA_03465 0.73 +0.1
3,628,967 + CCNA_03465 0.75 -0.0
3,628,967 + CCNA_03465 0.75 -1.5
3,628,975 - CCNA_03465 0.76 -0.5
3,628,975 - CCNA_03465 0.76 -0.9
3,629,056 + CCNA_03465 0.83 -0.7
3,629,064 - CCNA_03465 0.83 +0.5
3,629,064 - CCNA_03465 0.83 +0.1
3,629,080 + CCNA_03465 0.85 +0.6
3,629,080 + CCNA_03465 0.85 -1.2
3,629,083 - CCNA_03465 0.85 -1.0
3,629,102 + CCNA_03465 0.87 +2.4

Or see this region's nucleotide sequence