Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02547 and CCNA_02548 are separated by 121 nucleotides CCNA_02548 and CCNA_02549 overlap by 4 nucleotides CCNA_02549 and CCNA_02550 are separated by 8 nucleotides
CCNA_02547: CCNA_02547 - response regulator receiver protein DivK, at 2,695,941 to 2,696,318
_02547
CCNA_02548: CCNA_02548 - hypothetical protein, at 2,696,440 to 2,697,087
_02548
CCNA_02549: CCNA_02549 - glucokinase, at 2,697,084 to 2,697,974
_02549
CCNA_02550: CCNA_02550 - DNA polymerase IV-kappa DinB, at 2,697,983 to 2,699,239
_02550
Position (kb)
2697
2698 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.318 kb on + strand at 2696.326 kb on - strand at 2696.326 kb on - strand at 2696.395 kb on + strand at 2696.400 kb on + strand at 2696.401 kb on - strand at 2696.403 kb on - strand at 2696.403 kb on - strand at 2696.448 kb on + strand at 2696.466 kb on + strand at 2696.471 kb on + strand at 2696.479 kb on - strand at 2696.484 kb on - strand at 2696.491 kb on + strand at 2696.491 kb on + strand at 2696.499 kb on - strand at 2696.518 kb on + strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.526 kb on - strand, within CCNA_02548 at 2696.529 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.540 kb on + strand, within CCNA_02548 at 2696.548 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.575 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.596 kb on - strand, within CCNA_02548 at 2696.598 kb on + strand, within CCNA_02548 at 2696.618 kb on - strand, within CCNA_02548 at 2696.628 kb on - strand, within CCNA_02548 at 2696.692 kb on + strand, within CCNA_02548 at 2696.700 kb on - strand, within CCNA_02548 at 2696.705 kb on - strand, within CCNA_02548 at 2696.758 kb on + strand, within CCNA_02548 at 2696.781 kb on - strand, within CCNA_02548 at 2696.804 kb on + strand, within CCNA_02548 at 2696.819 kb on + strand, within CCNA_02548 at 2696.828 kb on + strand, within CCNA_02548 at 2696.835 kb on + strand, within CCNA_02548 at 2696.836 kb on + strand, within CCNA_02548 at 2696.844 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.859 kb on - strand, within CCNA_02548 at 2696.860 kb on - strand, within CCNA_02548 at 2696.871 kb on - strand, within CCNA_02548 at 2696.872 kb on + strand, within CCNA_02548 at 2696.881 kb on - strand, within CCNA_02548 at 2696.888 kb on + strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.891 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.896 kb on - strand, within CCNA_02548 at 2696.901 kb on - strand, within CCNA_02548 at 2696.991 kb on + strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.007 kb on - strand, within CCNA_02548 at 2697.030 kb on - strand at 2697.030 kb on - strand at 2697.151 kb on + strand at 2697.221 kb on + strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.244 kb on - strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.267 kb on + strand, within CCNA_02549 at 2697.269 kb on - strand, within CCNA_02549 at 2697.303 kb on + strand, within CCNA_02549 at 2697.306 kb on - strand, within CCNA_02549 at 2697.331 kb on - strand, within CCNA_02549 at 2697.338 kb on - strand, within CCNA_02549 at 2697.415 kb on - strand, within CCNA_02549 at 2697.496 kb on + strand, within CCNA_02549 at 2697.552 kb on + strand, within CCNA_02549 at 2697.561 kb on + strand, within CCNA_02549 at 2697.566 kb on + strand, within CCNA_02549 at 2697.566 kb on + strand, within CCNA_02549 at 2697.566 kb on + strand, within CCNA_02549 at 2697.569 kb on - strand, within CCNA_02549 at 2697.574 kb on - strand, within CCNA_02549 at 2697.577 kb on + strand, within CCNA_02549 at 2697.579 kb on - strand, within CCNA_02549 at 2697.587 kb on - strand, within CCNA_02549 at 2697.625 kb on + strand, within CCNA_02549 at 2697.713 kb on - strand, within CCNA_02549 at 2697.725 kb on - strand, within CCNA_02549 at 2697.735 kb on - strand, within CCNA_02549 at 2697.753 kb on + strand, within CCNA_02549 at 2697.758 kb on + strand, within CCNA_02549 at 2697.761 kb on - strand, within CCNA_02549 at 2697.764 kb on + strand, within CCNA_02549 at 2697.767 kb on - strand, within CCNA_02549 at 2697.802 kb on + strand, within CCNA_02549 at 2697.842 kb on + strand, within CCNA_02549 at 2697.905 kb on + strand at 2697.905 kb on + strand at 2697.905 kb on + strand at 2697.908 kb on - strand at 2697.912 kb on + strand at 2697.913 kb on - strand at 2697.913 kb on - strand at 2697.920 kb on - strand at 2697.936 kb on - strand at 2697.948 kb on + strand at 2697.952 kb on + strand at 2697.956 kb on - strand at 2697.956 kb on - strand at 2697.976 kb on - strand at 2697.989 kb on - strand at 2698.007 kb on + strand at 2698.106 kb on - strand at 2698.118 kb on + strand, within CCNA_02550 at 2698.130 kb on + strand, within CCNA_02550 at 2698.148 kb on - strand, within CCNA_02550 at 2698.188 kb on + strand, within CCNA_02550 at 2698.208 kb on + strand, within CCNA_02550 at 2698.210 kb on + strand, within CCNA_02550 at 2698.216 kb on - strand, within CCNA_02550 at 2698.218 kb on - strand, within CCNA_02550 at 2698.218 kb on - strand, within CCNA_02550 at 2698.255 kb on + strand, within CCNA_02550 at 2698.291 kb on + strand, within CCNA_02550 at 2698.380 kb on + strand, within CCNA_02550 at 2698.380 kb on + strand, within CCNA_02550 at 2698.380 kb on + strand, within CCNA_02550 at 2698.388 kb on - strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.390 kb on + strand, within CCNA_02550 at 2698.393 kb on - strand, within CCNA_02550 at 2698.393 kb on - strand, within CCNA_02550 at 2698.398 kb on - strand, within CCNA_02550 at 2698.413 kb on - strand, within CCNA_02550 at 2698.434 kb on + strand, within CCNA_02550 at 2698.436 kb on - strand, within CCNA_02550 at 2698.442 kb on - strand, within CCNA_02550 at 2698.470 kb on - strand, within CCNA_02550 at 2698.484 kb on + strand, within CCNA_02550 at 2698.487 kb on - strand, within CCNA_02550 at 2698.539 kb on - strand, within CCNA_02550 at 2698.546 kb on + strand, within CCNA_02550 at 2698.586 kb on + strand, within CCNA_02550 at 2698.594 kb on - strand, within CCNA_02550 at 2698.620 kb on - strand, within CCNA_02550 at 2698.620 kb on - strand, within CCNA_02550 at 2698.621 kb on - strand, within CCNA_02550 at 2698.658 kb on + strand, within CCNA_02550 at 2698.665 kb on - strand, within CCNA_02550 at 2698.670 kb on - strand, within CCNA_02550 at 2698.685 kb on - strand, within CCNA_02550 at 2698.695 kb on + strand, within CCNA_02550 at 2698.700 kb on + strand, within CCNA_02550 at 2698.708 kb on - strand, within CCNA_02550 at 2698.714 kb on + strand, within CCNA_02550 at 2698.768 kb on + strand, within CCNA_02550 at 2698.793 kb on - strand, within CCNA_02550 at 2698.795 kb on + strand, within CCNA_02550 at 2698.815 kb on - strand, within CCNA_02550 at 2698.862 kb on + strand, within CCNA_02550 at 2698.870 kb on - strand, within CCNA_02550 at 2698.935 kb on + strand, within CCNA_02550 at 2698.948 kb on - strand, within CCNA_02550 at 2698.950 kb on + strand, within CCNA_02550 at 2698.950 kb on + strand, within CCNA_02550 at 2698.958 kb on - strand, within CCNA_02550
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,696,318 + -0.4 2,696,318 + +0.6 2,696,318 + -0.2 2,696,318 + -0.8 2,696,318 + +0.4 2,696,318 + -0.6 2,696,326 - -0.8 2,696,326 - +0.7 2,696,395 + -0.4 2,696,400 + +0.3 2,696,401 - +0.5 2,696,403 - -0.0 2,696,403 - +0.9 2,696,448 + +0.5 2,696,466 + -0.2 2,696,471 + +1.8 2,696,479 - -1.3 2,696,484 - -1.0 2,696,491 + -0.6 2,696,491 + +0.7 2,696,499 - -1.0 2,696,518 + CCNA_02548 0.12 +0.0 2,696,526 - CCNA_02548 0.13 -0.0 2,696,526 - CCNA_02548 0.13 +0.0 2,696,529 + CCNA_02548 0.14 +0.1 2,696,540 + CCNA_02548 0.15 +0.5 2,696,540 + CCNA_02548 0.15 +0.3 2,696,540 + CCNA_02548 0.15 +0.8 2,696,548 - CCNA_02548 0.17 -0.3 2,696,575 - CCNA_02548 0.21 -0.4 2,696,575 - CCNA_02548 0.21 -0.3 2,696,596 - CCNA_02548 0.24 -1.1 2,696,596 - CCNA_02548 0.24 +0.4 2,696,598 + CCNA_02548 0.24 -0.1 2,696,618 - CCNA_02548 0.27 -0.0 2,696,628 - CCNA_02548 0.29 +0.4 2,696,692 + CCNA_02548 0.39 -0.8 2,696,700 - CCNA_02548 0.40 +0.1 2,696,705 - CCNA_02548 0.41 +0.6 2,696,758 + CCNA_02548 0.49 -0.3 2,696,781 - CCNA_02548 0.53 -0.1 2,696,804 + CCNA_02548 0.56 -0.2 2,696,819 + CCNA_02548 0.58 +0.2 2,696,828 + CCNA_02548 0.60 +1.8 2,696,835 + CCNA_02548 0.61 -0.1 2,696,836 + CCNA_02548 0.61 -0.1 2,696,844 - CCNA_02548 0.62 +0.2 2,696,859 - CCNA_02548 0.65 +0.1 2,696,859 - CCNA_02548 0.65 -1.0 2,696,859 - CCNA_02548 0.65 +0.1 2,696,860 - CCNA_02548 0.65 +0.0 2,696,871 - CCNA_02548 0.67 +0.8 2,696,872 + CCNA_02548 0.67 -0.8 2,696,881 - CCNA_02548 0.68 -0.1 2,696,888 + CCNA_02548 0.69 -0.1 2,696,891 - CCNA_02548 0.70 +1.6 2,696,891 - CCNA_02548 0.70 +0.1 2,696,891 - CCNA_02548 0.70 +0.2 2,696,896 - CCNA_02548 0.70 +0.0 2,696,896 - CCNA_02548 0.70 +0.4 2,696,896 - CCNA_02548 0.70 -0.5 2,696,896 - CCNA_02548 0.70 +2.2 2,696,896 - CCNA_02548 0.70 +1.2 2,696,896 - CCNA_02548 0.70 -0.6 2,696,901 - CCNA_02548 0.71 -0.6 2,696,991 + CCNA_02548 0.85 -0.2 2,697,007 - CCNA_02548 0.88 +0.1 2,697,007 - CCNA_02548 0.88 -0.7 2,697,030 - -0.4 2,697,030 - -0.4 2,697,151 + -0.3 2,697,221 + CCNA_02549 0.15 +0.4 2,697,244 - CCNA_02549 0.18 -0.9 2,697,244 - CCNA_02549 0.18 -0.5 2,697,267 + CCNA_02549 0.21 +0.5 2,697,267 + CCNA_02549 0.21 +0.1 2,697,267 + CCNA_02549 0.21 +1.2 2,697,269 - CCNA_02549 0.21 -0.0 2,697,303 + CCNA_02549 0.25 -0.4 2,697,306 - CCNA_02549 0.25 -0.4 2,697,331 - CCNA_02549 0.28 +0.2 2,697,338 - CCNA_02549 0.29 +0.1 2,697,415 - CCNA_02549 0.37 -1.2 2,697,496 + CCNA_02549 0.46 +0.7 2,697,552 + CCNA_02549 0.53 -0.8 2,697,561 + CCNA_02549 0.54 +0.3 2,697,566 + CCNA_02549 0.54 +0.4 2,697,566 + CCNA_02549 0.54 +0.6 2,697,566 + CCNA_02549 0.54 -0.4 2,697,569 - CCNA_02549 0.54 -0.3 2,697,574 - CCNA_02549 0.55 +0.8 2,697,577 + CCNA_02549 0.55 +0.5 2,697,579 - CCNA_02549 0.56 +0.2 2,697,587 - CCNA_02549 0.56 -1.0 2,697,625 + CCNA_02549 0.61 +0.1 2,697,713 - CCNA_02549 0.71 -0.9 2,697,725 - CCNA_02549 0.72 +0.2 2,697,735 - CCNA_02549 0.73 -0.1 2,697,753 + CCNA_02549 0.75 -0.0 2,697,758 + CCNA_02549 0.76 +0.5 2,697,761 - CCNA_02549 0.76 -0.1 2,697,764 + CCNA_02549 0.76 +1.3 2,697,767 - CCNA_02549 0.77 +0.7 2,697,802 + CCNA_02549 0.81 +0.9 2,697,842 + CCNA_02549 0.85 +0.2 2,697,905 + +0.3 2,697,905 + +0.1 2,697,905 + +0.4 2,697,908 - +0.9 2,697,912 + +0.9 2,697,913 - +0.3 2,697,913 - -0.1 2,697,920 - -1.9 2,697,936 - -0.6 2,697,948 + -0.2 2,697,952 + -0.5 2,697,956 - +0.8 2,697,956 - -0.7 2,697,976 - -0.7 2,697,989 - +0.2 2,698,007 + +0.8 2,698,106 - +0.6 2,698,118 + CCNA_02550 0.11 +0.1 2,698,130 + CCNA_02550 0.12 +1.6 2,698,148 - CCNA_02550 0.13 +0.5 2,698,188 + CCNA_02550 0.16 +0.6 2,698,208 + CCNA_02550 0.18 +0.3 2,698,210 + CCNA_02550 0.18 -1.1 2,698,216 - CCNA_02550 0.19 +0.1 2,698,218 - CCNA_02550 0.19 +0.2 2,698,218 - CCNA_02550 0.19 -1.1 2,698,255 + CCNA_02550 0.22 -0.9 2,698,291 + CCNA_02550 0.25 +0.2 2,698,380 + CCNA_02550 0.32 +0.4 2,698,380 + CCNA_02550 0.32 +0.2 2,698,380 + CCNA_02550 0.32 +0.8 2,698,388 - CCNA_02550 0.32 +0.1 2,698,390 + CCNA_02550 0.32 +0.3 2,698,390 + CCNA_02550 0.32 -0.3 2,698,390 + CCNA_02550 0.32 -0.4 2,698,390 + CCNA_02550 0.32 +0.7 2,698,390 + CCNA_02550 0.32 +0.3 2,698,393 - CCNA_02550 0.33 +1.8 2,698,393 - CCNA_02550 0.33 +0.7 2,698,398 - CCNA_02550 0.33 +0.8 2,698,413 - CCNA_02550 0.34 -0.3 2,698,434 + CCNA_02550 0.36 -0.0 2,698,436 - CCNA_02550 0.36 +1.1 2,698,442 - CCNA_02550 0.37 -1.0 2,698,470 - CCNA_02550 0.39 -0.0 2,698,484 + CCNA_02550 0.40 -0.9 2,698,487 - CCNA_02550 0.40 -0.9 2,698,539 - CCNA_02550 0.44 -1.2 2,698,546 + CCNA_02550 0.45 -0.2 2,698,586 + CCNA_02550 0.48 -0.5 2,698,594 - CCNA_02550 0.49 -2.1 2,698,620 - CCNA_02550 0.51 +0.3 2,698,620 - CCNA_02550 0.51 +1.3 2,698,621 - CCNA_02550 0.51 +0.4 2,698,658 + CCNA_02550 0.54 -1.1 2,698,665 - CCNA_02550 0.54 -0.5 2,698,670 - CCNA_02550 0.55 +0.2 2,698,685 - CCNA_02550 0.56 -0.2 2,698,695 + CCNA_02550 0.57 +0.3 2,698,700 + CCNA_02550 0.57 +3.0 2,698,708 - CCNA_02550 0.58 +0.7 2,698,714 + CCNA_02550 0.58 +0.2 2,698,768 + CCNA_02550 0.62 -0.2 2,698,793 - CCNA_02550 0.64 +1.0 2,698,795 + CCNA_02550 0.65 -1.2 2,698,815 - CCNA_02550 0.66 +2.4 2,698,862 + CCNA_02550 0.70 -0.9 2,698,870 - CCNA_02550 0.71 -2.5 2,698,935 + CCNA_02550 0.76 +0.2 2,698,948 - CCNA_02550 0.77 -0.5 2,698,950 + CCNA_02550 0.77 +0.1 2,698,950 + CCNA_02550 0.77 +0.2 2,698,958 - CCNA_02550 0.78 -0.0
Or see this region's nucleotide sequence