Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02370 and CCNA_02371 are separated by 186 nucleotides CCNA_02371 and CCNA_02372 are separated by 26 nucleotides CCNA_02372 and CCNA_02373 overlap by 29 nucleotides
CCNA_02370: CCNA_02370 - TonB-dependent maltose outer membrane transporter malA, at 2,514,140 to 2,516,905
_02370
CCNA_02371: CCNA_02371 - tryptophan halogenase superfamily protein, at 2,517,092 to 2,518,606
_02371
CCNA_02372: CCNA_02372 - hypothetical protein, at 2,518,633 to 2,518,776
_02372
CCNA_02373: CCNA_02373 - transposase, at 2,518,748 to 2,519,674
_02373
Position (kb)
2517
2518
2519 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2516.143 kb on - strand, within CCNA_02370 at 2516.167 kb on + strand, within CCNA_02370 at 2516.187 kb on + strand, within CCNA_02370 at 2516.187 kb on + strand, within CCNA_02370 at 2516.200 kb on + strand, within CCNA_02370 at 2516.225 kb on - strand, within CCNA_02370 at 2516.273 kb on + strand, within CCNA_02370 at 2516.278 kb on + strand, within CCNA_02370 at 2516.278 kb on - strand, within CCNA_02370 at 2516.281 kb on - strand, within CCNA_02370 at 2516.350 kb on + strand, within CCNA_02370 at 2516.350 kb on + strand, within CCNA_02370 at 2516.350 kb on + strand, within CCNA_02370 at 2516.399 kb on - strand, within CCNA_02370 at 2516.403 kb on - strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.436 kb on + strand, within CCNA_02370 at 2516.478 kb on - strand, within CCNA_02370 at 2516.488 kb on - strand, within CCNA_02370 at 2516.490 kb on + strand, within CCNA_02370 at 2516.495 kb on + strand, within CCNA_02370 at 2516.524 kb on + strand, within CCNA_02370 at 2516.524 kb on - strand, within CCNA_02370 at 2516.532 kb on - strand, within CCNA_02370 at 2516.554 kb on + strand, within CCNA_02370 at 2516.555 kb on - strand, within CCNA_02370 at 2516.560 kb on - strand, within CCNA_02370 at 2516.563 kb on - strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.575 kb on + strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.583 kb on - strand, within CCNA_02370 at 2516.585 kb on + strand, within CCNA_02370 at 2516.593 kb on - strand, within CCNA_02370 at 2516.656 kb on + strand at 2516.683 kb on - strand at 2516.683 kb on - strand at 2516.713 kb on - strand at 2516.728 kb on - strand at 2516.769 kb on + strand at 2516.796 kb on - strand at 2516.796 kb on - strand at 2516.812 kb on + strand at 2516.812 kb on + strand at 2516.812 kb on + strand at 2516.827 kb on - strand at 2516.926 kb on + strand at 2516.928 kb on + strand at 2516.934 kb on - strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.974 kb on + strand at 2516.982 kb on - strand at 2516.982 kb on - strand at 2516.982 kb on - strand at 2517.060 kb on + strand at 2517.068 kb on - strand at 2517.106 kb on + strand at 2517.114 kb on - strand at 2517.115 kb on - strand at 2517.131 kb on - strand at 2517.151 kb on - strand at 2517.161 kb on - strand at 2517.174 kb on + strand at 2517.174 kb on + strand at 2517.182 kb on - strand at 2517.207 kb on + strand at 2517.207 kb on + strand at 2517.248 kb on + strand, within CCNA_02371 at 2517.374 kb on - strand, within CCNA_02371 at 2517.382 kb on - strand, within CCNA_02371 at 2517.389 kb on - strand, within CCNA_02371 at 2517.434 kb on - strand, within CCNA_02371 at 2517.466 kb on - strand, within CCNA_02371 at 2517.502 kb on + strand, within CCNA_02371 at 2517.551 kb on - strand, within CCNA_02371 at 2517.556 kb on + strand, within CCNA_02371 at 2517.564 kb on - strand, within CCNA_02371 at 2517.591 kb on + strand, within CCNA_02371 at 2517.598 kb on - strand, within CCNA_02371 at 2517.598 kb on - strand, within CCNA_02371 at 2517.599 kb on - strand, within CCNA_02371 at 2517.606 kb on - strand, within CCNA_02371 at 2517.654 kb on + strand, within CCNA_02371 at 2517.654 kb on + strand, within CCNA_02371 at 2517.689 kb on + strand, within CCNA_02371 at 2517.689 kb on + strand, within CCNA_02371 at 2517.689 kb on + strand, within CCNA_02371 at 2517.698 kb on - strand, within CCNA_02371 at 2517.741 kb on + strand, within CCNA_02371 at 2517.750 kb on + strand, within CCNA_02371 at 2517.750 kb on + strand, within CCNA_02371 at 2517.758 kb on - strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.773 kb on + strand, within CCNA_02371 at 2517.794 kb on - strand, within CCNA_02371 at 2517.801 kb on - strand, within CCNA_02371 at 2517.820 kb on - strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.863 kb on + strand, within CCNA_02371 at 2517.864 kb on - strand, within CCNA_02371 at 2517.865 kb on - strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.871 kb on - strand, within CCNA_02371 at 2517.883 kb on + strand, within CCNA_02371 at 2517.949 kb on - strand, within CCNA_02371 at 2517.981 kb on - strand, within CCNA_02371 at 2518.083 kb on - strand, within CCNA_02371 at 2518.088 kb on + strand, within CCNA_02371 at 2518.101 kb on - strand, within CCNA_02371 at 2518.123 kb on + strand, within CCNA_02371 at 2518.128 kb on + strand, within CCNA_02371 at 2518.136 kb on - strand, within CCNA_02371 at 2518.147 kb on - strand, within CCNA_02371 at 2518.149 kb on + strand, within CCNA_02371 at 2518.156 kb on - strand, within CCNA_02371 at 2518.156 kb on - strand, within CCNA_02371 at 2518.193 kb on - strand, within CCNA_02371 at 2518.193 kb on - strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.226 kb on + strand, within CCNA_02371 at 2518.234 kb on - strand, within CCNA_02371 at 2518.234 kb on - strand, within CCNA_02371 at 2518.267 kb on + strand, within CCNA_02371 at 2518.275 kb on - strand, within CCNA_02371 at 2518.287 kb on + strand, within CCNA_02371 at 2518.325 kb on - strand, within CCNA_02371 at 2518.335 kb on + strand, within CCNA_02371 at 2518.336 kb on - strand, within CCNA_02371 at 2518.343 kb on - strand, within CCNA_02371 at 2518.359 kb on + strand, within CCNA_02371 at 2518.399 kb on + strand, within CCNA_02371 at 2518.448 kb on - strand, within CCNA_02371 at 2518.448 kb on - strand, within CCNA_02371 at 2518.472 kb on + strand at 2518.600 kb on + strand at 2518.626 kb on + strand at 2518.648 kb on - strand, within CCNA_02372 at 2518.648 kb on - strand, within CCNA_02372 at 2518.686 kb on - strand, within CCNA_02372 at 2518.687 kb on + strand, within CCNA_02372 at 2518.695 kb on - strand, within CCNA_02372 at 2518.702 kb on + strand, within CCNA_02372 at 2518.734 kb on - strand, within CCNA_02372 at 2518.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,516,143 - CCNA_02370 0.72 -1.1 2,516,167 + CCNA_02370 0.73 -0.1 2,516,187 + CCNA_02370 0.74 +0.8 2,516,187 + CCNA_02370 0.74 +0.2 2,516,200 + CCNA_02370 0.74 -0.0 2,516,225 - CCNA_02370 0.75 +0.8 2,516,273 + CCNA_02370 0.77 -2.0 2,516,278 + CCNA_02370 0.77 -1.8 2,516,278 - CCNA_02370 0.77 -0.9 2,516,281 - CCNA_02370 0.77 -0.7 2,516,350 + CCNA_02370 0.80 -0.8 2,516,350 + CCNA_02370 0.80 -1.3 2,516,350 + CCNA_02370 0.80 -1.7 2,516,399 - CCNA_02370 0.82 +2.3 2,516,403 - CCNA_02370 0.82 -0.4 2,516,436 + CCNA_02370 0.83 +0.0 2,516,436 + CCNA_02370 0.83 +0.6 2,516,436 + CCNA_02370 0.83 +1.0 2,516,436 + CCNA_02370 0.83 -1.2 2,516,478 - CCNA_02370 0.85 -1.7 2,516,488 - CCNA_02370 0.85 +0.4 2,516,490 + CCNA_02370 0.85 -1.1 2,516,495 + CCNA_02370 0.85 +0.6 2,516,524 + CCNA_02370 0.86 -1.1 2,516,524 - CCNA_02370 0.86 -0.6 2,516,532 - CCNA_02370 0.86 +1.2 2,516,554 + CCNA_02370 0.87 -0.4 2,516,555 - CCNA_02370 0.87 +0.7 2,516,560 - CCNA_02370 0.87 +0.2 2,516,563 - CCNA_02370 0.88 -0.5 2,516,575 + CCNA_02370 0.88 +0.3 2,516,575 + CCNA_02370 0.88 -0.4 2,516,575 + CCNA_02370 0.88 -1.3 2,516,575 + CCNA_02370 0.88 +0.1 2,516,583 - CCNA_02370 0.88 +1.6 2,516,583 - CCNA_02370 0.88 -0.1 2,516,583 - CCNA_02370 0.88 -0.2 2,516,583 - CCNA_02370 0.88 -0.3 2,516,583 - CCNA_02370 0.88 -0.4 2,516,583 - CCNA_02370 0.88 -1.4 2,516,585 + CCNA_02370 0.88 -0.6 2,516,593 - CCNA_02370 0.89 -1.7 2,516,656 + +0.2 2,516,683 - -0.8 2,516,683 - -0.5 2,516,713 - -0.5 2,516,728 - -0.6 2,516,769 + +0.8 2,516,796 - +0.3 2,516,796 - -0.8 2,516,812 + +0.9 2,516,812 + +0.6 2,516,812 + +0.3 2,516,827 - +0.6 2,516,926 + +0.3 2,516,928 + -0.2 2,516,934 - -0.9 2,516,974 + -0.5 2,516,974 + -2.7 2,516,974 + +0.2 2,516,974 + -0.7 2,516,974 + -0.7 2,516,982 - -0.2 2,516,982 - +1.2 2,516,982 - -0.2 2,517,060 + +0.2 2,517,068 - +0.0 2,517,106 + +0.7 2,517,114 - -0.0 2,517,115 - -1.9 2,517,131 - +0.3 2,517,151 - +0.0 2,517,161 - -0.3 2,517,174 + -0.2 2,517,174 + +1.6 2,517,182 - -0.3 2,517,207 + +0.1 2,517,207 + -0.2 2,517,248 + CCNA_02371 0.10 +0.2 2,517,374 - CCNA_02371 0.19 +0.3 2,517,382 - CCNA_02371 0.19 -0.0 2,517,389 - CCNA_02371 0.20 -0.3 2,517,434 - CCNA_02371 0.23 -0.4 2,517,466 - CCNA_02371 0.25 -0.8 2,517,502 + CCNA_02371 0.27 +0.1 2,517,551 - CCNA_02371 0.30 -1.2 2,517,556 + CCNA_02371 0.31 +1.8 2,517,564 - CCNA_02371 0.31 -0.2 2,517,591 + CCNA_02371 0.33 +0.1 2,517,598 - CCNA_02371 0.33 -0.7 2,517,598 - CCNA_02371 0.33 +0.9 2,517,599 - CCNA_02371 0.33 -0.1 2,517,606 - CCNA_02371 0.34 +0.1 2,517,654 + CCNA_02371 0.37 +0.6 2,517,654 + CCNA_02371 0.37 +0.2 2,517,689 + CCNA_02371 0.39 -0.7 2,517,689 + CCNA_02371 0.39 +0.3 2,517,689 + CCNA_02371 0.39 -0.4 2,517,698 - CCNA_02371 0.40 -0.2 2,517,741 + CCNA_02371 0.43 +0.0 2,517,750 + CCNA_02371 0.43 -0.3 2,517,750 + CCNA_02371 0.43 +0.2 2,517,758 - CCNA_02371 0.44 -0.9 2,517,773 + CCNA_02371 0.45 -0.3 2,517,773 + CCNA_02371 0.45 +2.0 2,517,794 - CCNA_02371 0.46 -0.8 2,517,801 - CCNA_02371 0.47 +1.2 2,517,820 - CCNA_02371 0.48 +0.9 2,517,863 + CCNA_02371 0.51 +0.3 2,517,863 + CCNA_02371 0.51 -0.8 2,517,864 - CCNA_02371 0.51 +0.1 2,517,865 - CCNA_02371 0.51 +0.3 2,517,871 - CCNA_02371 0.51 +0.1 2,517,871 - CCNA_02371 0.51 -0.5 2,517,871 - CCNA_02371 0.51 -0.1 2,517,883 + CCNA_02371 0.52 -1.4 2,517,949 - CCNA_02371 0.57 -0.3 2,517,981 - CCNA_02371 0.59 +0.1 2,518,083 - CCNA_02371 0.65 +0.0 2,518,088 + CCNA_02371 0.66 -0.3 2,518,101 - CCNA_02371 0.67 +0.0 2,518,123 + CCNA_02371 0.68 -1.1 2,518,128 + CCNA_02371 0.68 -0.2 2,518,136 - CCNA_02371 0.69 -0.0 2,518,147 - CCNA_02371 0.70 -0.4 2,518,149 + CCNA_02371 0.70 -1.6 2,518,156 - CCNA_02371 0.70 -0.8 2,518,156 - CCNA_02371 0.70 +0.5 2,518,193 - CCNA_02371 0.73 -1.3 2,518,193 - CCNA_02371 0.73 +0.7 2,518,226 + CCNA_02371 0.75 -0.6 2,518,226 + CCNA_02371 0.75 -0.0 2,518,226 + CCNA_02371 0.75 -0.1 2,518,226 + CCNA_02371 0.75 -1.2 2,518,234 - CCNA_02371 0.75 -0.4 2,518,234 - CCNA_02371 0.75 +1.0 2,518,267 + CCNA_02371 0.78 -0.2 2,518,275 - CCNA_02371 0.78 +0.6 2,518,287 + CCNA_02371 0.79 -1.2 2,518,325 - CCNA_02371 0.81 +0.7 2,518,335 + CCNA_02371 0.82 -1.8 2,518,336 - CCNA_02371 0.82 -0.5 2,518,343 - CCNA_02371 0.83 -0.6 2,518,359 + CCNA_02371 0.84 -0.1 2,518,399 + CCNA_02371 0.86 -0.2 2,518,448 - CCNA_02371 0.90 -0.0 2,518,448 - CCNA_02371 0.90 -0.1 2,518,472 + +0.4 2,518,600 + +0.5 2,518,626 + -1.1 2,518,648 - CCNA_02372 0.10 -0.2 2,518,648 - CCNA_02372 0.10 +0.1 2,518,686 - CCNA_02372 0.37 +0.7 2,518,687 + CCNA_02372 0.38 +0.5 2,518,695 - CCNA_02372 0.43 +0.4 2,518,702 + CCNA_02372 0.48 -0.4 2,518,734 - CCNA_02372 0.70 +0.2 2,518,763 - -0.2
Or see this region's nucleotide sequence