Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02325 and CCNA_02326 are separated by 117 nucleotides CCNA_02326 and CCNA_02327 are separated by 154 nucleotides
CCNA_02325: CCNA_02325 - ornithine carbamoyltransferase, at 2,466,949 to 2,467,884
_02325
CCNA_02326: CCNA_02326 - acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase, at 2,468,002 to 2,469,219
_02326
CCNA_02327: CCNA_02327 - ABC transporter permease protein, at 2,469,374 to 2,470,195
_02327
Position (kb)
2468
2469
2470 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2467.047 kb on - strand, within CCNA_02325 at 2467.732 kb on - strand, within CCNA_02325 at 2467.749 kb on - strand, within CCNA_02325 at 2467.841 kb on - strand at 2467.856 kb on - strand at 2467.924 kb on + strand at 2467.938 kb on + strand at 2467.958 kb on - strand at 2467.958 kb on - strand at 2467.959 kb on - strand at 2468.012 kb on + strand at 2468.118 kb on - strand at 2468.192 kb on - strand, within CCNA_02326 at 2468.353 kb on - strand, within CCNA_02326 at 2468.432 kb on - strand, within CCNA_02326 at 2468.637 kb on - strand, within CCNA_02326 at 2468.972 kb on - strand, within CCNA_02326 at 2468.998 kb on - strand, within CCNA_02326 at 2469.053 kb on + strand, within CCNA_02326 at 2469.202 kb on - strand at 2469.222 kb on - strand at 2469.380 kb on - strand at 2469.406 kb on + strand at 2469.495 kb on + strand, within CCNA_02327 at 2469.499 kb on + strand, within CCNA_02327 at 2469.501 kb on - strand, within CCNA_02327 at 2469.517 kb on + strand, within CCNA_02327 at 2469.536 kb on - strand, within CCNA_02327 at 2469.577 kb on + strand, within CCNA_02327 at 2469.585 kb on - strand, within CCNA_02327 at 2469.585 kb on - strand, within CCNA_02327 at 2469.585 kb on - strand, within CCNA_02327 at 2469.585 kb on - strand, within CCNA_02327 at 2469.630 kb on + strand, within CCNA_02327 at 2469.638 kb on - strand, within CCNA_02327 at 2469.638 kb on - strand, within CCNA_02327 at 2469.719 kb on - strand, within CCNA_02327 at 2469.719 kb on - strand, within CCNA_02327 at 2469.723 kb on + strand, within CCNA_02327 at 2469.723 kb on + strand, within CCNA_02327 at 2469.723 kb on + strand, within CCNA_02327 at 2469.723 kb on + strand, within CCNA_02327 at 2469.723 kb on + strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.731 kb on - strand, within CCNA_02327 at 2469.786 kb on - strand, within CCNA_02327 at 2469.793 kb on + strand, within CCNA_02327 at 2469.801 kb on - strand, within CCNA_02327 at 2469.810 kb on + strand, within CCNA_02327 at 2469.827 kb on + strand, within CCNA_02327 at 2469.828 kb on + strand, within CCNA_02327 at 2469.828 kb on + strand, within CCNA_02327 at 2469.828 kb on + strand, within CCNA_02327 at 2469.861 kb on + strand, within CCNA_02327 at 2469.907 kb on - strand, within CCNA_02327 at 2469.945 kb on + strand, within CCNA_02327 at 2469.953 kb on - strand, within CCNA_02327 at 2469.963 kb on - strand, within CCNA_02327 at 2469.979 kb on + strand, within CCNA_02327 at 2469.988 kb on - strand, within CCNA_02327 at 2469.997 kb on - strand, within CCNA_02327 at 2469.997 kb on - strand, within CCNA_02327 at 2470.023 kb on + strand, within CCNA_02327 at 2470.043 kb on - strand, within CCNA_02327 at 2470.055 kb on - strand, within CCNA_02327 at 2470.107 kb on + strand, within CCNA_02327 at 2470.115 kb on - strand at 2470.151 kb on + strand at 2470.158 kb on - strand at 2470.196 kb on - strand at 2470.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,467,047 - CCNA_02325 0.10 +0.5 2,467,732 - CCNA_02325 0.84 -1.3 2,467,749 - CCNA_02325 0.85 -1.5 2,467,841 - -1.2 2,467,856 - +1.4 2,467,924 + +1.0 2,467,938 + +0.4 2,467,958 - -0.8 2,467,958 - +0.5 2,467,959 - +1.2 2,468,012 + -0.1 2,468,118 - +0.4 2,468,192 - CCNA_02326 0.16 +0.1 2,468,353 - CCNA_02326 0.29 -0.7 2,468,432 - CCNA_02326 0.35 -1.2 2,468,637 - CCNA_02326 0.52 -0.3 2,468,972 - CCNA_02326 0.80 -0.1 2,468,998 - CCNA_02326 0.82 -0.6 2,469,053 + CCNA_02326 0.86 +0.1 2,469,202 - +0.5 2,469,222 - +0.1 2,469,380 - +0.4 2,469,406 + -0.4 2,469,495 + CCNA_02327 0.15 -0.8 2,469,499 + CCNA_02327 0.15 -1.3 2,469,501 - CCNA_02327 0.15 +0.7 2,469,517 + CCNA_02327 0.17 -2.8 2,469,536 - CCNA_02327 0.20 +1.0 2,469,577 + CCNA_02327 0.25 -1.9 2,469,585 - CCNA_02327 0.26 -0.1 2,469,585 - CCNA_02327 0.26 +0.7 2,469,585 - CCNA_02327 0.26 +0.1 2,469,585 - CCNA_02327 0.26 -0.1 2,469,630 + CCNA_02327 0.31 +0.6 2,469,638 - CCNA_02327 0.32 +1.7 2,469,638 - CCNA_02327 0.32 +0.4 2,469,719 - CCNA_02327 0.42 +0.5 2,469,719 - CCNA_02327 0.42 +0.6 2,469,723 + CCNA_02327 0.42 -0.1 2,469,723 + CCNA_02327 0.42 -0.3 2,469,723 + CCNA_02327 0.42 -0.4 2,469,723 + CCNA_02327 0.42 -0.5 2,469,723 + CCNA_02327 0.42 -2.0 2,469,731 - CCNA_02327 0.43 -0.8 2,469,731 - CCNA_02327 0.43 +0.9 2,469,731 - CCNA_02327 0.43 -0.1 2,469,731 - CCNA_02327 0.43 +0.2 2,469,731 - CCNA_02327 0.43 +1.0 2,469,731 - CCNA_02327 0.43 -0.1 2,469,731 - CCNA_02327 0.43 -0.0 2,469,731 - CCNA_02327 0.43 -0.4 2,469,731 - CCNA_02327 0.43 +0.3 2,469,731 - CCNA_02327 0.43 +0.7 2,469,731 - CCNA_02327 0.43 +1.2 2,469,731 - CCNA_02327 0.43 +0.4 2,469,731 - CCNA_02327 0.43 +0.3 2,469,731 - CCNA_02327 0.43 +0.0 2,469,731 - CCNA_02327 0.43 +0.3 2,469,731 - CCNA_02327 0.43 +0.2 2,469,731 - CCNA_02327 0.43 -0.1 2,469,731 - CCNA_02327 0.43 -0.1 2,469,731 - CCNA_02327 0.43 -0.0 2,469,731 - CCNA_02327 0.43 -0.2 2,469,786 - CCNA_02327 0.50 +0.1 2,469,793 + CCNA_02327 0.51 -1.4 2,469,801 - CCNA_02327 0.52 +0.9 2,469,810 + CCNA_02327 0.53 -0.4 2,469,827 + CCNA_02327 0.55 -1.1 2,469,828 + CCNA_02327 0.55 +0.5 2,469,828 + CCNA_02327 0.55 -0.0 2,469,828 + CCNA_02327 0.55 -0.8 2,469,861 + CCNA_02327 0.59 +0.4 2,469,907 - CCNA_02327 0.65 -0.8 2,469,945 + CCNA_02327 0.69 -0.4 2,469,953 - CCNA_02327 0.70 +0.4 2,469,963 - CCNA_02327 0.72 -1.3 2,469,979 + CCNA_02327 0.74 +1.7 2,469,988 - CCNA_02327 0.75 +0.3 2,469,997 - CCNA_02327 0.76 -0.0 2,469,997 - CCNA_02327 0.76 +0.8 2,470,023 + CCNA_02327 0.79 +0.2 2,470,043 - CCNA_02327 0.81 -0.7 2,470,055 - CCNA_02327 0.83 +0.7 2,470,107 + CCNA_02327 0.89 -0.2 2,470,115 - -0.0 2,470,151 + -1.0 2,470,158 - +0.2 2,470,196 - -0.2 2,470,205 + -0.6
Or see this region's nucleotide sequence