Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02279

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02277 and CCNA_02278 are separated by 106 nucleotidesCCNA_02278 and CCNA_02279 overlap by 4 nucleotidesCCNA_02279 and CCNA_02280 overlap by 4 nucleotidesCCNA_02280 and CCNA_02281 are separated by 91 nucleotides CCNA_02277: CCNA_02277 - TonB-dependent outer membrane channel, at 2,426,768 to 2,428,969 _02277 CCNA_02278: CCNA_02278 - hypothetical protein, at 2,429,076 to 2,429,684 _02278 CCNA_02279: CCNA_02279 - disulfide bond formation protein B, at 2,429,681 to 2,430,310 _02279 CCNA_02280: CCNA_02280 - 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 2,430,307 to 2,430,867 _02280 CCNA_02281: CCNA_02281 - membrane alanine aminopeptidase, at 2,430,959 to 2,432,740 _02281 Position (kb) 2429 2430 2431Strain fitness (log2 ratio) -1 0 1at 2428.736 kb on + strand, within CCNA_02277at 2428.839 kb on + strandat 2428.891 kb on + strandat 2429.623 kb on - strand, within CCNA_02278at 2429.627 kb on - strandat 2429.695 kb on + strandat 2429.748 kb on - strand, within CCNA_02279at 2429.748 kb on - strand, within CCNA_02279at 2429.962 kb on + strand, within CCNA_02279at 2430.301 kb on - strandat 2430.304 kb on + strandat 2431.063 kb on - strandat 2431.082 kb on - strandat 2431.084 kb on - strandat 2431.184 kb on + strand, within CCNA_02281at 2431.185 kb on + strand, within CCNA_02281at 2431.187 kb on - strand, within CCNA_02281at 2431.211 kb on - strand, within CCNA_02281at 2431.221 kb on - strand, within CCNA_02281at 2431.302 kb on + strand, within CCNA_02281

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,428,736 + CCNA_02277 0.89 -0.1
2,428,839 + +0.0
2,428,891 + +0.1
2,429,623 - CCNA_02278 0.90 -0.8
2,429,627 - -0.8
2,429,695 + +0.5
2,429,748 - CCNA_02279 0.11 -1.3
2,429,748 - CCNA_02279 0.11 -0.6
2,429,962 + CCNA_02279 0.45 -0.1
2,430,301 - -1.2
2,430,304 + +0.2
2,431,063 - -0.3
2,431,082 - +0.8
2,431,084 - -1.0
2,431,184 + CCNA_02281 0.13 +0.6
2,431,185 + CCNA_02281 0.13 -0.6
2,431,187 - CCNA_02281 0.13 -0.1
2,431,211 - CCNA_02281 0.14 -0.1
2,431,221 - CCNA_02281 0.15 +0.1
2,431,302 + CCNA_02281 0.19 +0.0

Or see this region's nucleotide sequence