Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02248

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02247 and CCNA_02248 are separated by 1 nucleotidesCCNA_02248 and CCNA_02249 are separated by 74 nucleotidesCCNA_02249 and CCNA_02250 are separated by 207 nucleotides CCNA_02247: CCNA_02247 - pantoate-beta-alanine ligase, at 2,396,214 to 2,397,071 _02247 CCNA_02248: CCNA_02248 - hypothetical protein, at 2,397,073 to 2,397,162 _02248 CCNA_02249: CCNA_02249 - conserved hypothetical cytosolic protein, at 2,397,237 to 2,397,635 _02249 CCNA_02250: CCNA_02250 - methylcrotonyl-CoA carboxylase biotin-containing subunit, at 2,397,843 to 2,399,807 _02250 Position (kb) 2397 2398Strain fitness (log2 ratio) -2 -1 0 1 2at 2396.107 kb on + strandat 2396.122 kb on - strandat 2396.162 kb on - strandat 2396.177 kb on + strandat 2396.185 kb on - strandat 2396.185 kb on - strandat 2397.108 kb on + strand, within CCNA_02248at 2397.113 kb on + strand, within CCNA_02248at 2397.171 kb on + strandat 2397.171 kb on + strandat 2397.179 kb on - strandat 2397.199 kb on - strandat 2397.364 kb on - strand, within CCNA_02249at 2397.470 kb on - strand, within CCNA_02249at 2397.470 kb on - strand, within CCNA_02249at 2397.475 kb on - strand, within CCNA_02249at 2397.484 kb on + strand, within CCNA_02249at 2397.484 kb on + strand, within CCNA_02249at 2397.557 kb on - strand, within CCNA_02249at 2397.577 kb on + strand, within CCNA_02249at 2397.614 kb on + strandat 2397.624 kb on + strandat 2397.627 kb on - strandat 2397.637 kb on - strandat 2397.639 kb on - strandat 2397.646 kb on - strandat 2397.659 kb on + strandat 2397.667 kb on - strandat 2397.771 kb on - strandat 2397.771 kb on - strandat 2397.771 kb on - strandat 2397.846 kb on + strandat 2397.846 kb on + strandat 2397.849 kb on - strandat 2397.865 kb on - strandat 2397.867 kb on + strandat 2397.867 kb on + strandat 2397.875 kb on - strandat 2397.943 kb on + strandat 2397.968 kb on + strandat 2397.984 kb on + strandat 2398.025 kb on - strandat 2398.124 kb on - strand, within CCNA_02250

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,396,107 + +2.6
2,396,122 - +0.8
2,396,162 - -0.3
2,396,177 + +0.2
2,396,185 - +0.3
2,396,185 - -0.0
2,397,108 + CCNA_02248 0.39 -1.2
2,397,113 + CCNA_02248 0.44 -0.8
2,397,171 + +0.2
2,397,171 + -0.1
2,397,179 - +1.5
2,397,199 - +0.6
2,397,364 - CCNA_02249 0.32 +0.5
2,397,470 - CCNA_02249 0.58 +1.0
2,397,470 - CCNA_02249 0.58 +0.4
2,397,475 - CCNA_02249 0.60 -0.4
2,397,484 + CCNA_02249 0.62 -0.4
2,397,484 + CCNA_02249 0.62 +0.1
2,397,557 - CCNA_02249 0.80 -0.1
2,397,577 + CCNA_02249 0.85 -0.1
2,397,614 + -0.1
2,397,624 + +0.2
2,397,627 - +0.3
2,397,637 - +0.2
2,397,639 - +0.8
2,397,646 - +1.0
2,397,659 + +0.2
2,397,667 - +0.2
2,397,771 - +1.1
2,397,771 - +0.1
2,397,771 - +0.4
2,397,846 + -1.1
2,397,846 + +0.2
2,397,849 - +0.1
2,397,865 - +0.5
2,397,867 + +0.3
2,397,867 + -0.0
2,397,875 - +0.7
2,397,943 + -1.5
2,397,968 + -2.2
2,397,984 + -0.5
2,398,025 - -0.9
2,398,124 - CCNA_02250 0.14 +0.8

Or see this region's nucleotide sequence