Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02085 and CCNA_02086 overlap by 4 nucleotides CCNA_02086 and CCNA_02087 are separated by 169 nucleotides
CCNA_02085: CCNA_02085 - anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase, at 2,234,353 to 2,235,390
_02085
CCNA_02086: CCNA_02086 - cell division protein FtsN, at 2,235,387 to 2,236,187
_02086
CCNA_02087: CCNA_02087 - deoxyguanosinetriphosphate triphosphohydrolase, at 2,236,357 to 2,237,541
_02087
Position (kb)
2235
2236
2237 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2234.395 kb on + strand at 2234.403 kb on - strand at 2234.437 kb on + strand at 2234.445 kb on - strand at 2234.445 kb on - strand at 2234.501 kb on + strand, within CCNA_02085 at 2234.503 kb on - strand, within CCNA_02085 at 2234.538 kb on - strand, within CCNA_02085 at 2234.563 kb on + strand, within CCNA_02085 at 2234.585 kb on - strand, within CCNA_02085 at 2234.610 kb on + strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.618 kb on - strand, within CCNA_02085 at 2234.620 kb on + strand, within CCNA_02085 at 2234.630 kb on - strand, within CCNA_02085 at 2234.804 kb on - strand, within CCNA_02085 at 2234.809 kb on - strand, within CCNA_02085 at 2234.827 kb on + strand, within CCNA_02085 at 2234.858 kb on - strand, within CCNA_02085 at 2234.914 kb on + strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.922 kb on - strand, within CCNA_02085 at 2234.939 kb on - strand, within CCNA_02085 at 2235.017 kb on - strand, within CCNA_02085 at 2235.056 kb on + strand, within CCNA_02085 at 2235.063 kb on + strand, within CCNA_02085 at 2235.225 kb on + strand, within CCNA_02085 at 2235.233 kb on - strand, within CCNA_02085 at 2235.279 kb on + strand, within CCNA_02085 at 2235.287 kb on + strand at 2235.292 kb on + strand at 2235.293 kb on - strand at 2235.295 kb on - strand at 2235.302 kb on - strand at 2235.349 kb on + strand at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.374 kb on + strand at 2236.227 kb on - strand at 2236.237 kb on + strand at 2236.252 kb on + strand at 2236.262 kb on + strand at 2236.265 kb on - strand at 2236.278 kb on + strand at 2236.286 kb on - strand at 2236.286 kb on - strand at 2236.295 kb on - strand at 2236.295 kb on - strand at 2236.310 kb on + strand at 2236.313 kb on + strand at 2236.318 kb on - strand at 2236.345 kb on + strand at 2236.348 kb on - strand at 2236.350 kb on + strand at 2236.368 kb on - strand at 2236.368 kb on - strand at 2236.376 kb on - strand at 2236.448 kb on - strand at 2236.465 kb on - strand at 2236.503 kb on + strand, within CCNA_02087 at 2236.542 kb on + strand, within CCNA_02087 at 2236.550 kb on - strand, within CCNA_02087 at 2236.559 kb on - strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.586 kb on + strand, within CCNA_02087 at 2236.594 kb on - strand, within CCNA_02087 at 2236.610 kb on + strand, within CCNA_02087 at 2236.618 kb on - strand, within CCNA_02087 at 2236.634 kb on + strand, within CCNA_02087 at 2236.659 kb on - strand, within CCNA_02087 at 2236.722 kb on + strand, within CCNA_02087 at 2236.725 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.754 kb on - strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.772 kb on + strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.780 kb on - strand, within CCNA_02087 at 2236.808 kb on + strand, within CCNA_02087 at 2236.835 kb on + strand, within CCNA_02087 at 2236.838 kb on - strand, within CCNA_02087 at 2236.843 kb on - strand, within CCNA_02087 at 2236.861 kb on - strand, within CCNA_02087 at 2236.910 kb on - strand, within CCNA_02087 at 2236.912 kb on + strand, within CCNA_02087 at 2236.930 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.937 kb on + strand, within CCNA_02087 at 2236.938 kb on - strand, within CCNA_02087 at 2236.948 kb on + strand, within CCNA_02087 at 2236.951 kb on - strand, within CCNA_02087 at 2236.988 kb on - strand, within CCNA_02087 at 2237.018 kb on - strand, within CCNA_02087 at 2237.021 kb on + strand, within CCNA_02087 at 2237.029 kb on - strand, within CCNA_02087 at 2237.039 kb on - strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.083 kb on + strand, within CCNA_02087 at 2237.092 kb on - strand, within CCNA_02087 at 2237.096 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.097 kb on - strand, within CCNA_02087 at 2237.111 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.116 kb on - strand, within CCNA_02087 at 2237.118 kb on + strand, within CCNA_02087 at 2237.121 kb on - strand, within CCNA_02087 at 2237.137 kb on - strand, within CCNA_02087 at 2237.143 kb on + strand, within CCNA_02087 at 2237.144 kb on + strand, within CCNA_02087
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 2,234,395 + -0.9 2,234,403 - +0.9 2,234,437 + +0.0 2,234,445 - +0.1 2,234,445 - -0.7 2,234,501 + CCNA_02085 0.14 -0.6 2,234,503 - CCNA_02085 0.14 +0.7 2,234,538 - CCNA_02085 0.18 -2.1 2,234,563 + CCNA_02085 0.20 -0.1 2,234,585 - CCNA_02085 0.22 -0.1 2,234,610 + CCNA_02085 0.25 -0.9 2,234,618 - CCNA_02085 0.26 -1.2 2,234,618 - CCNA_02085 0.26 +0.7 2,234,620 + CCNA_02085 0.26 +0.4 2,234,630 - CCNA_02085 0.27 -0.4 2,234,804 - CCNA_02085 0.43 -2.2 2,234,809 - CCNA_02085 0.44 +1.1 2,234,827 + CCNA_02085 0.46 +0.1 2,234,858 - CCNA_02085 0.49 +0.1 2,234,914 + CCNA_02085 0.54 +0.1 2,234,922 - CCNA_02085 0.55 -1.3 2,234,922 - CCNA_02085 0.55 +0.4 2,234,939 - CCNA_02085 0.56 -1.7 2,235,017 - CCNA_02085 0.64 +0.4 2,235,056 + CCNA_02085 0.68 +0.7 2,235,063 + CCNA_02085 0.68 -1.7 2,235,225 + CCNA_02085 0.84 -0.4 2,235,233 - CCNA_02085 0.85 -1.7 2,235,279 + CCNA_02085 0.89 -0.3 2,235,287 + -0.7 2,235,292 + +0.4 2,235,293 - +1.4 2,235,295 - -0.4 2,235,302 - +0.9 2,235,349 + -0.7 2,235,357 - -1.5 2,235,357 - -0.4 2,235,374 + -0.2 2,236,227 - -0.7 2,236,237 + +0.8 2,236,252 + -0.4 2,236,262 + -0.2 2,236,265 - -0.7 2,236,278 + +0.1 2,236,286 - +0.5 2,236,286 - +0.3 2,236,295 - +0.1 2,236,295 - +0.2 2,236,310 + -1.0 2,236,313 + +0.0 2,236,318 - +2.2 2,236,345 + -1.0 2,236,348 - +0.0 2,236,350 + -0.1 2,236,368 - +1.1 2,236,368 - +0.3 2,236,376 - -1.2 2,236,448 - +0.2 2,236,465 - +0.1 2,236,503 + CCNA_02087 0.12 -2.1 2,236,542 + CCNA_02087 0.16 +0.3 2,236,550 - CCNA_02087 0.16 +0.9 2,236,559 - CCNA_02087 0.17 +0.3 2,236,586 + CCNA_02087 0.19 -2.6 2,236,586 + CCNA_02087 0.19 -1.6 2,236,586 + CCNA_02087 0.19 -2.2 2,236,594 - CCNA_02087 0.20 -0.2 2,236,610 + CCNA_02087 0.21 -0.2 2,236,618 - CCNA_02087 0.22 +0.4 2,236,634 + CCNA_02087 0.23 -1.3 2,236,659 - CCNA_02087 0.25 -0.0 2,236,722 + CCNA_02087 0.31 -1.9 2,236,725 - CCNA_02087 0.31 +0.7 2,236,754 - CCNA_02087 0.34 +0.1 2,236,754 - CCNA_02087 0.34 +1.9 2,236,754 - CCNA_02087 0.34 +1.0 2,236,754 - CCNA_02087 0.34 -0.0 2,236,772 + CCNA_02087 0.35 -0.9 2,236,772 + CCNA_02087 0.35 -1.0 2,236,772 + CCNA_02087 0.35 -1.4 2,236,772 + CCNA_02087 0.35 +0.0 2,236,780 - CCNA_02087 0.36 -0.4 2,236,780 - CCNA_02087 0.36 -0.1 2,236,780 - CCNA_02087 0.36 +0.2 2,236,780 - CCNA_02087 0.36 +0.7 2,236,808 + CCNA_02087 0.38 +1.7 2,236,835 + CCNA_02087 0.40 -1.3 2,236,838 - CCNA_02087 0.41 -0.4 2,236,843 - CCNA_02087 0.41 -0.7 2,236,861 - CCNA_02087 0.43 -2.2 2,236,910 - CCNA_02087 0.47 -0.3 2,236,912 + CCNA_02087 0.47 +0.4 2,236,930 + CCNA_02087 0.48 -0.7 2,236,937 + CCNA_02087 0.49 +0.4 2,236,937 + CCNA_02087 0.49 -0.5 2,236,938 - CCNA_02087 0.49 -0.3 2,236,948 + CCNA_02087 0.50 -1.1 2,236,951 - CCNA_02087 0.50 -0.3 2,236,988 - CCNA_02087 0.53 -0.3 2,237,018 - CCNA_02087 0.56 +0.5 2,237,021 + CCNA_02087 0.56 -0.7 2,237,029 - CCNA_02087 0.57 -0.0 2,237,039 - CCNA_02087 0.58 +0.8 2,237,083 + CCNA_02087 0.61 -1.9 2,237,083 + CCNA_02087 0.61 -1.2 2,237,083 + CCNA_02087 0.61 -1.3 2,237,092 - CCNA_02087 0.62 -0.7 2,237,096 - CCNA_02087 0.62 +0.2 2,237,097 - CCNA_02087 0.62 +1.1 2,237,097 - CCNA_02087 0.62 -0.2 2,237,111 - CCNA_02087 0.64 +0.2 2,237,116 - CCNA_02087 0.64 -0.9 2,237,116 - CCNA_02087 0.64 +0.2 2,237,118 + CCNA_02087 0.64 -1.4 2,237,121 - CCNA_02087 0.64 +0.2 2,237,137 - CCNA_02087 0.66 -0.7 2,237,143 + CCNA_02087 0.66 -0.0 2,237,144 + CCNA_02087 0.66 +0.2
Or see this region's nucleotide sequence