Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02060

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02059 and CCNA_02060 overlap by 4 nucleotidesCCNA_02060 and CCNA_02061 are separated by 163 nucleotides CCNA_02059: CCNA_02059 - ribosomal large subunit pseudouridine synthase C, at 2,208,899 to 2,209,894 _02059 CCNA_02060: CCNA_02060 - CrcB family protein, at 2,209,891 to 2,210,274 _02060 CCNA_02061: CCNA_02061 - hypothetical protein, at 2,210,438 to 2,211,667 _02061 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -2 -1 0 1 2at 2209.037 kb on - strand, within CCNA_02059at 2209.067 kb on + strand, within CCNA_02059at 2209.074 kb on - strand, within CCNA_02059at 2209.077 kb on + strand, within CCNA_02059at 2209.126 kb on - strand, within CCNA_02059at 2209.165 kb on - strand, within CCNA_02059at 2209.165 kb on - strand, within CCNA_02059at 2209.167 kb on - strand, within CCNA_02059at 2209.187 kb on - strand, within CCNA_02059at 2209.271 kb on - strand, within CCNA_02059at 2209.296 kb on - strand, within CCNA_02059at 2209.345 kb on + strand, within CCNA_02059at 2209.353 kb on - strand, within CCNA_02059at 2209.379 kb on + strand, within CCNA_02059at 2209.441 kb on - strand, within CCNA_02059at 2209.442 kb on - strand, within CCNA_02059at 2209.452 kb on - strand, within CCNA_02059at 2209.503 kb on + strand, within CCNA_02059at 2209.518 kb on - strand, within CCNA_02059at 2209.523 kb on - strand, within CCNA_02059at 2209.546 kb on + strand, within CCNA_02059at 2209.586 kb on - strand, within CCNA_02059at 2209.586 kb on - strand, within CCNA_02059at 2209.662 kb on - strand, within CCNA_02059at 2209.736 kb on - strand, within CCNA_02059at 2209.736 kb on - strand, within CCNA_02059at 2209.799 kb on + strandat 2209.807 kb on - strandat 2209.922 kb on - strandat 2210.007 kb on + strand, within CCNA_02060at 2210.093 kb on - strand, within CCNA_02060at 2210.093 kb on - strand, within CCNA_02060at 2210.277 kb on - strandat 2210.304 kb on - strandat 2210.359 kb on - strandat 2210.416 kb on - strandat 2210.428 kb on - strandat 2210.441 kb on + strandat 2210.443 kb on + strandat 2210.459 kb on - strandat 2210.514 kb on + strandat 2210.553 kb on + strandat 2210.553 kb on + strandat 2210.553 kb on + strandat 2210.617 kb on - strand, within CCNA_02061at 2210.617 kb on - strand, within CCNA_02061at 2210.703 kb on + strand, within CCNA_02061at 2210.708 kb on + strand, within CCNA_02061at 2210.778 kb on - strand, within CCNA_02061at 2210.837 kb on - strand, within CCNA_02061at 2210.839 kb on + strand, within CCNA_02061at 2210.839 kb on + strand, within CCNA_02061at 2210.839 kb on + strand, within CCNA_02061at 2210.847 kb on - strand, within CCNA_02061at 2210.847 kb on - strand, within CCNA_02061at 2210.847 kb on - strand, within CCNA_02061at 2210.862 kb on - strand, within CCNA_02061at 2211.068 kb on - strand, within CCNA_02061at 2211.086 kb on + strand, within CCNA_02061at 2211.111 kb on - strand, within CCNA_02061at 2211.111 kb on - strand, within CCNA_02061at 2211.146 kb on + strand, within CCNA_02061at 2211.154 kb on - strand, within CCNA_02061at 2211.154 kb on - strand, within CCNA_02061at 2211.154 kb on - strand, within CCNA_02061at 2211.198 kb on - strand, within CCNA_02061at 2211.200 kb on + strand, within CCNA_02061at 2211.264 kb on - strand, within CCNA_02061

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,209,037 - CCNA_02059 0.14 +1.1
2,209,067 + CCNA_02059 0.17 -1.4
2,209,074 - CCNA_02059 0.18 +1.9
2,209,077 + CCNA_02059 0.18 -0.8
2,209,126 - CCNA_02059 0.23 -0.2
2,209,165 - CCNA_02059 0.27 -0.5
2,209,165 - CCNA_02059 0.27 +0.1
2,209,167 - CCNA_02059 0.27 -0.0
2,209,187 - CCNA_02059 0.29 +0.3
2,209,271 - CCNA_02059 0.37 +0.4
2,209,296 - CCNA_02059 0.40 -0.2
2,209,345 + CCNA_02059 0.45 -0.6
2,209,353 - CCNA_02059 0.46 +0.4
2,209,379 + CCNA_02059 0.48 +0.6
2,209,441 - CCNA_02059 0.54 +0.3
2,209,442 - CCNA_02059 0.55 -0.5
2,209,452 - CCNA_02059 0.56 +1.4
2,209,503 + CCNA_02059 0.61 -0.0
2,209,518 - CCNA_02059 0.62 -0.2
2,209,523 - CCNA_02059 0.63 +0.4
2,209,546 + CCNA_02059 0.65 -2.4
2,209,586 - CCNA_02059 0.69 +1.4
2,209,586 - CCNA_02059 0.69 +0.8
2,209,662 - CCNA_02059 0.77 +0.4
2,209,736 - CCNA_02059 0.84 -0.6
2,209,736 - CCNA_02059 0.84 +1.2
2,209,799 + -1.0
2,209,807 - +0.1
2,209,922 - +0.8
2,210,007 + CCNA_02060 0.30 -1.7
2,210,093 - CCNA_02060 0.53 +0.8
2,210,093 - CCNA_02060 0.53 -0.6
2,210,277 - +0.2
2,210,304 - -0.8
2,210,359 - +0.2
2,210,416 - +0.2
2,210,428 - -2.1
2,210,441 + +2.5
2,210,443 + +1.3
2,210,459 - -0.8
2,210,514 + +0.4
2,210,553 + -1.5
2,210,553 + -0.2
2,210,553 + +0.2
2,210,617 - CCNA_02061 0.15 -1.1
2,210,617 - CCNA_02061 0.15 +0.4
2,210,703 + CCNA_02061 0.22 +0.0
2,210,708 + CCNA_02061 0.22 +0.4
2,210,778 - CCNA_02061 0.28 +0.8
2,210,837 - CCNA_02061 0.32 +0.2
2,210,839 + CCNA_02061 0.33 +0.6
2,210,839 + CCNA_02061 0.33 +0.8
2,210,839 + CCNA_02061 0.33 +0.3
2,210,847 - CCNA_02061 0.33 -2.3
2,210,847 - CCNA_02061 0.33 -0.2
2,210,847 - CCNA_02061 0.33 +0.6
2,210,862 - CCNA_02061 0.34 +0.1
2,211,068 - CCNA_02061 0.51 -0.1
2,211,086 + CCNA_02061 0.53 +0.1
2,211,111 - CCNA_02061 0.55 -0.3
2,211,111 - CCNA_02061 0.55 -0.6
2,211,146 + CCNA_02061 0.58 +0.4
2,211,154 - CCNA_02061 0.58 +0.3
2,211,154 - CCNA_02061 0.58 +1.3
2,211,154 - CCNA_02061 0.58 +0.2
2,211,198 - CCNA_02061 0.62 -1.6
2,211,200 + CCNA_02061 0.62 +0.7
2,211,264 - CCNA_02061 0.67 -0.5

Or see this region's nucleotide sequence