Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01944

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01942 and CCNA_01943 are separated by 178 nucleotidesCCNA_01943 and CCNA_01944 are separated by 66 nucleotidesCCNA_01944 and CCNA_01945 are separated by 97 nucleotides CCNA_01942: CCNA_01942 - Rrf2 family protein, at 2,084,921 to 2,085,397 _01942 CCNA_01943: CCNA_01943 - alpha/beta hydrolase family protein, at 2,085,576 to 2,086,226 _01943 CCNA_01944: CCNA_01944 - McrA-family restriction endonuclease, at 2,086,293 to 2,086,811 _01944 CCNA_01945: CCNA_01945 - anhydro-N-acetylmuramic acid kinase, at 2,086,909 to 2,088,006 _01945 Position (kb) 2086 2087Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.400 kb on + strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.408 kb on - strandat 2085.474 kb on - strandat 2086.244 kb on + strandat 2086.252 kb on - strandat 2086.265 kb on - strandat 2086.286 kb on - strandat 2086.291 kb on + strandat 2086.299 kb on - strandat 2086.324 kb on + strandat 2086.351 kb on - strand, within CCNA_01944at 2086.609 kb on + strand, within CCNA_01944at 2086.679 kb on + strand, within CCNA_01944at 2086.689 kb on - strand, within CCNA_01944at 2086.729 kb on - strand, within CCNA_01944at 2086.739 kb on - strand, within CCNA_01944at 2086.759 kb on + strand, within CCNA_01944at 2086.785 kb on + strandat 2086.798 kb on - strandat 2086.861 kb on - strandat 2086.866 kb on + strandat 2086.866 kb on + strandat 2086.866 kb on + strandat 2086.866 kb on + strandat 2086.866 kb on + strandat 2086.866 kb on + strandat 2086.866 kb on + strandat 2086.866 kb on + strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.874 kb on - strandat 2086.885 kb on - strandat 2086.885 kb on - strandat 2086.913 kb on + strandat 2086.965 kb on - strandat 2086.985 kb on + strandat 2086.998 kb on - strandat 2086.998 kb on - strandat 2087.017 kb on + strandat 2087.023 kb on + strand, within CCNA_01945at 2087.061 kb on - strand, within CCNA_01945at 2087.079 kb on + strand, within CCNA_01945at 2087.104 kb on - strand, within CCNA_01945at 2087.108 kb on - strand, within CCNA_01945at 2087.162 kb on + strand, within CCNA_01945at 2087.162 kb on + strand, within CCNA_01945at 2087.170 kb on - strand, within CCNA_01945at 2087.179 kb on + strand, within CCNA_01945at 2087.180 kb on + strand, within CCNA_01945at 2087.181 kb on - strand, within CCNA_01945at 2087.188 kb on - strand, within CCNA_01945at 2087.188 kb on - strand, within CCNA_01945at 2087.265 kb on + strand, within CCNA_01945at 2087.312 kb on - strand, within CCNA_01945at 2087.358 kb on - strand, within CCNA_01945at 2087.366 kb on - strand, within CCNA_01945at 2087.385 kb on + strand, within CCNA_01945at 2087.393 kb on - strand, within CCNA_01945at 2087.406 kb on + strand, within CCNA_01945at 2087.406 kb on + strand, within CCNA_01945at 2087.406 kb on + strand, within CCNA_01945at 2087.417 kb on + strand, within CCNA_01945at 2087.417 kb on + strand, within CCNA_01945at 2087.440 kb on + strand, within CCNA_01945at 2087.448 kb on - strand, within CCNA_01945at 2087.478 kb on - strand, within CCNA_01945at 2087.521 kb on + strand, within CCNA_01945at 2087.534 kb on - strand, within CCNA_01945at 2087.536 kb on - strand, within CCNA_01945at 2087.536 kb on - strand, within CCNA_01945at 2087.608 kb on - strand, within CCNA_01945at 2087.664 kb on + strand, within CCNA_01945at 2087.664 kb on + strand, within CCNA_01945at 2087.704 kb on + strand, within CCNA_01945at 2087.712 kb on - strand, within CCNA_01945at 2087.722 kb on - strand, within CCNA_01945at 2087.734 kb on - strand, within CCNA_01945at 2087.736 kb on + strand, within CCNA_01945at 2087.747 kb on + strand, within CCNA_01945at 2087.747 kb on + strand, within CCNA_01945at 2087.776 kb on + strand, within CCNA_01945at 2087.776 kb on + strand, within CCNA_01945at 2087.786 kb on + strand, within CCNA_01945at 2087.786 kb on + strand, within CCNA_01945at 2087.786 kb on + strand, within CCNA_01945

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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2,085,400 + +1.2
2,085,400 + +0.1
2,085,400 + -0.7
2,085,400 + -1.0
2,085,400 + -1.1
2,085,400 + -0.4
2,085,408 - -0.1
2,085,408 - -0.5
2,085,408 - -0.4
2,085,408 - +0.0
2,085,408 - +0.4
2,085,408 - +1.4
2,085,408 - +0.5
2,085,408 - +1.1
2,085,408 - -0.0
2,085,408 - +0.4
2,085,408 - +0.2
2,085,474 - +0.6
2,086,244 + +0.6
2,086,252 - +0.8
2,086,265 - +0.7
2,086,286 - +0.4
2,086,291 + -0.1
2,086,299 - +0.4
2,086,324 + +0.2
2,086,351 - CCNA_01944 0.11 -1.1
2,086,609 + CCNA_01944 0.61 -0.3
2,086,679 + CCNA_01944 0.74 -2.2
2,086,689 - CCNA_01944 0.76 +0.0
2,086,729 - CCNA_01944 0.84 +0.6
2,086,739 - CCNA_01944 0.86 -0.5
2,086,759 + CCNA_01944 0.90 -0.8
2,086,785 + -0.1
2,086,798 - +0.9
2,086,861 - +0.7
2,086,866 + +0.3
2,086,866 + -0.1
2,086,866 + -1.0
2,086,866 + +0.3
2,086,866 + +0.9
2,086,866 + -0.1
2,086,866 + +0.4
2,086,866 + -0.2
2,086,874 - +0.9
2,086,874 - -0.2
2,086,874 - +0.5
2,086,874 - +0.6
2,086,874 - +0.1
2,086,874 - +0.7
2,086,874 - +0.0
2,086,874 - -0.3
2,086,874 - +0.1
2,086,874 - +0.3
2,086,874 - -0.2
2,086,874 - -1.6
2,086,874 - +0.4
2,086,874 - +1.2
2,086,874 - -0.3
2,086,874 - +0.1
2,086,885 - +0.1
2,086,885 - -0.2
2,086,913 + +0.4
2,086,965 - -0.5
2,086,985 + +0.7
2,086,998 - +0.4
2,086,998 - -2.6
2,087,017 + -1.1
2,087,023 + CCNA_01945 0.10 +0.8
2,087,061 - CCNA_01945 0.14 -1.2
2,087,079 + CCNA_01945 0.15 -0.5
2,087,104 - CCNA_01945 0.18 -0.5
2,087,108 - CCNA_01945 0.18 +0.4
2,087,162 + CCNA_01945 0.23 -1.9
2,087,162 + CCNA_01945 0.23 -0.9
2,087,170 - CCNA_01945 0.24 -1.8
2,087,179 + CCNA_01945 0.25 -1.5
2,087,180 + CCNA_01945 0.25 -0.0
2,087,181 - CCNA_01945 0.25 -1.5
2,087,188 - CCNA_01945 0.25 -2.8
2,087,188 - CCNA_01945 0.25 +1.0
2,087,265 + CCNA_01945 0.32 -1.2
2,087,312 - CCNA_01945 0.37 +0.1
2,087,358 - CCNA_01945 0.41 +0.5
2,087,366 - CCNA_01945 0.42 +1.8
2,087,385 + CCNA_01945 0.43 -0.0
2,087,393 - CCNA_01945 0.44 -0.0
2,087,406 + CCNA_01945 0.45 -0.5
2,087,406 + CCNA_01945 0.45 +0.1
2,087,406 + CCNA_01945 0.45 -0.8
2,087,417 + CCNA_01945 0.46 +2.4
2,087,417 + CCNA_01945 0.46 +1.8
2,087,440 + CCNA_01945 0.48 -0.6
2,087,448 - CCNA_01945 0.49 -0.4
2,087,478 - CCNA_01945 0.52 +0.3
2,087,521 + CCNA_01945 0.56 -0.9
2,087,534 - CCNA_01945 0.57 -0.4
2,087,536 - CCNA_01945 0.57 +0.0
2,087,536 - CCNA_01945 0.57 +0.0
2,087,608 - CCNA_01945 0.64 -0.2
2,087,664 + CCNA_01945 0.69 +0.5
2,087,664 + CCNA_01945 0.69 -0.3
2,087,704 + CCNA_01945 0.72 -1.0
2,087,712 - CCNA_01945 0.73 -0.5
2,087,722 - CCNA_01945 0.74 -0.8
2,087,734 - CCNA_01945 0.75 -0.2
2,087,736 + CCNA_01945 0.75 -1.0
2,087,747 + CCNA_01945 0.76 -1.8
2,087,747 + CCNA_01945 0.76 -0.8
2,087,776 + CCNA_01945 0.79 +0.8
2,087,776 + CCNA_01945 0.79 -1.6
2,087,786 + CCNA_01945 0.80 -0.9
2,087,786 + CCNA_01945 0.80 +0.2
2,087,786 + CCNA_01945 0.80 -0.4

Or see this region's nucleotide sequence