Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01765

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01763 and CCNA_01764 are separated by 120 nucleotidesCCNA_01764 and CCNA_01765 overlap by 4 nucleotidesCCNA_01765 and CCNA_01766 are separated by 42 nucleotides CCNA_01763: CCNA_01763 - multifunctional aminopeptidase, at 1,891,999 to 1,893,480 _01763 CCNA_01764: CCNA_01764 - DNA polymerase III, chi subunit, at 1,893,601 to 1,894,062 _01764 CCNA_01765: CCNA_01765 - peptidase inhibitor, I78 family, at 1,894,059 to 1,894,400 _01765 CCNA_01766: CCNA_01766 - CsgG-related curli protein, at 1,894,443 to 1,895,228 _01766 Position (kb) 1894 1895Strain fitness (log2 ratio) -2 -1 0 1 2at 1893.089 kb on - strand, within CCNA_01763at 1893.292 kb on + strand, within CCNA_01763at 1893.325 kb on + strand, within CCNA_01763at 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.426 kb on + strandat 1893.428 kb on + strandat 1893.438 kb on + strandat 1893.447 kb on - strandat 1893.461 kb on - strandat 1893.465 kb on + strandat 1893.479 kb on + strandat 1893.487 kb on - strandat 1893.502 kb on + strandat 1893.515 kb on - strandat 1893.515 kb on - strandat 1893.530 kb on - strandat 1893.530 kb on - strandat 1893.564 kb on - strandat 1893.612 kb on + strandat 1893.620 kb on - strandat 1893.620 kb on - strandat 1894.077 kb on - strandat 1894.085 kb on - strandat 1894.085 kb on - strandat 1894.085 kb on - strandat 1894.219 kb on + strand, within CCNA_01765at 1894.258 kb on - strand, within CCNA_01765at 1894.406 kb on + strandat 1894.422 kb on + strandat 1894.493 kb on + strandat 1894.523 kb on + strand, within CCNA_01766at 1894.542 kb on + strand, within CCNA_01766at 1894.542 kb on + strand, within CCNA_01766at 1894.548 kb on - strand, within CCNA_01766at 1894.550 kb on - strand, within CCNA_01766at 1894.550 kb on - strand, within CCNA_01766at 1894.573 kb on + strand, within CCNA_01766at 1894.586 kb on + strand, within CCNA_01766at 1894.743 kb on + strand, within CCNA_01766at 1894.751 kb on - strand, within CCNA_01766at 1894.751 kb on - strand, within CCNA_01766at 1894.812 kb on + strand, within CCNA_01766at 1894.820 kb on - strand, within CCNA_01766at 1894.831 kb on - strand, within CCNA_01766at 1894.872 kb on + strand, within CCNA_01766at 1894.878 kb on - strand, within CCNA_01766at 1894.929 kb on - strand, within CCNA_01766at 1894.931 kb on - strand, within CCNA_01766at 1894.950 kb on - strand, within CCNA_01766at 1894.982 kb on + strand, within CCNA_01766at 1894.982 kb on + strand, within CCNA_01766at 1894.982 kb on - strand, within CCNA_01766at 1895.021 kb on + strand, within CCNA_01766at 1895.029 kb on - strand, within CCNA_01766at 1895.029 kb on - strand, within CCNA_01766at 1895.034 kb on - strand, within CCNA_01766at 1895.058 kb on + strand, within CCNA_01766at 1895.065 kb on + strand, within CCNA_01766at 1895.067 kb on - strand, within CCNA_01766at 1895.073 kb on - strand, within CCNA_01766at 1895.174 kb on - strandat 1895.183 kb on + strandat 1895.191 kb on - strandat 1895.214 kb on + strandat 1895.235 kb on + strandat 1895.236 kb on + strandat 1895.243 kb on - strandat 1895.304 kb on + strandat 1895.341 kb on + strandat 1895.349 kb on - strandat 1895.365 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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1,893,089 - CCNA_01763 0.74 +0.6
1,893,292 + CCNA_01763 0.87 +0.2
1,893,325 + CCNA_01763 0.89 -0.6
1,893,426 + +0.6
1,893,426 + +0.7
1,893,426 + -1.2
1,893,426 + +0.7
1,893,426 + +0.8
1,893,428 + +0.4
1,893,438 + +0.3
1,893,447 - +0.5
1,893,461 - -0.5
1,893,465 + +1.2
1,893,479 + +0.0
1,893,487 - +0.1
1,893,502 + +0.3
1,893,515 - +0.1
1,893,515 - -0.4
1,893,530 - +1.2
1,893,530 - +0.4
1,893,564 - +0.8
1,893,612 + +0.7
1,893,620 - -2.5
1,893,620 - -0.1
1,894,077 - +0.4
1,894,085 - -0.8
1,894,085 - -0.8
1,894,085 - -0.2
1,894,219 + CCNA_01765 0.47 +0.7
1,894,258 - CCNA_01765 0.58 -2.1
1,894,406 + +0.4
1,894,422 + +0.4
1,894,493 + -0.4
1,894,523 + CCNA_01766 0.10 -1.4
1,894,542 + CCNA_01766 0.13 -0.7
1,894,542 + CCNA_01766 0.13 +0.9
1,894,548 - CCNA_01766 0.13 -0.8
1,894,550 - CCNA_01766 0.14 +1.2
1,894,550 - CCNA_01766 0.14 +0.8
1,894,573 + CCNA_01766 0.17 -0.6
1,894,586 + CCNA_01766 0.18 +0.3
1,894,743 + CCNA_01766 0.38 -0.5
1,894,751 - CCNA_01766 0.39 +0.0
1,894,751 - CCNA_01766 0.39 -0.3
1,894,812 + CCNA_01766 0.47 -0.4
1,894,820 - CCNA_01766 0.48 -0.2
1,894,831 - CCNA_01766 0.49 -0.0
1,894,872 + CCNA_01766 0.55 -0.0
1,894,878 - CCNA_01766 0.55 +0.7
1,894,929 - CCNA_01766 0.62 +2.1
1,894,931 - CCNA_01766 0.62 +0.1
1,894,950 - CCNA_01766 0.65 -0.0
1,894,982 + CCNA_01766 0.69 -1.1
1,894,982 + CCNA_01766 0.69 +0.6
1,894,982 - CCNA_01766 0.69 +0.3
1,895,021 + CCNA_01766 0.74 -2.3
1,895,029 - CCNA_01766 0.75 -0.5
1,895,029 - CCNA_01766 0.75 -0.3
1,895,034 - CCNA_01766 0.75 -0.0
1,895,058 + CCNA_01766 0.78 -0.4
1,895,065 + CCNA_01766 0.79 -0.7
1,895,067 - CCNA_01766 0.79 +0.4
1,895,073 - CCNA_01766 0.80 +0.0
1,895,174 - +0.4
1,895,183 + -0.3
1,895,191 - +2.0
1,895,214 + -1.6
1,895,235 + -1.6
1,895,236 + -1.7
1,895,243 - +1.0
1,895,304 + +0.9
1,895,341 + +0.3
1,895,349 - +2.1
1,895,365 + +0.3

Or see this region's nucleotide sequence