Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01396 and CCNA_01397 are separated by 41 nucleotides CCNA_01397 and CCNA_01398 are separated by 7 nucleotides CCNA_01398 and CCNA_01399 are separated by 77 nucleotides
CCNA_01396: CCNA_01396 - tetratricopeptide repeat family protein, at 1,515,188 to 1,516,918
_01396
CCNA_01397: CCNA_01397 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 1,516,960 to 1,517,832
_01397
CCNA_01398: CCNA_01398 - peptidyl-prolyl cis-trans isomerase, at 1,517,840 to 1,518,478
_01398
CCNA_01399: CCNA_01399 - ammonium transporter/methylammonium transporter, at 1,518,556 to 1,520,088
_01399
Position (kb)
1517
1518
1519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1516.840 kb on + strand at 1516.907 kb on + strand at 1516.907 kb on + strand at 1516.920 kb on - strand at 1517.826 kb on + strand at 1517.834 kb on - strand at 1517.902 kb on - strand at 1517.911 kb on + strand, within CCNA_01398 at 1517.931 kb on - strand, within CCNA_01398 at 1517.933 kb on - strand, within CCNA_01398 at 1517.957 kb on + strand, within CCNA_01398 at 1517.957 kb on + strand, within CCNA_01398 at 1517.965 kb on - strand, within CCNA_01398 at 1517.979 kb on + strand, within CCNA_01398 at 1517.987 kb on - strand, within CCNA_01398 at 1517.987 kb on - strand, within CCNA_01398 at 1517.992 kb on - strand, within CCNA_01398 at 1518.006 kb on + strand, within CCNA_01398 at 1518.007 kb on + strand, within CCNA_01398 at 1518.061 kb on - strand, within CCNA_01398 at 1518.092 kb on + strand, within CCNA_01398 at 1518.124 kb on + strand, within CCNA_01398 at 1518.124 kb on + strand, within CCNA_01398 at 1518.132 kb on - strand, within CCNA_01398 at 1518.182 kb on - strand, within CCNA_01398 at 1518.271 kb on - strand, within CCNA_01398 at 1518.388 kb on - strand, within CCNA_01398 at 1518.472 kb on + strand at 1518.472 kb on + strand at 1518.472 kb on + strand at 1518.480 kb on - strand at 1518.480 kb on - strand at 1518.480 kb on - strand at 1518.514 kb on + strand at 1518.514 kb on + strand at 1518.535 kb on + strand at 1518.547 kb on + strand at 1518.547 kb on + strand at 1518.554 kb on + strand at 1518.555 kb on - strand at 1518.555 kb on - strand at 1518.681 kb on + strand at 1518.704 kb on + strand at 1518.705 kb on - strand at 1518.712 kb on - strand, within CCNA_01399 at 1518.712 kb on - strand, within CCNA_01399 at 1518.712 kb on - strand, within CCNA_01399 at 1518.712 kb on - strand, within CCNA_01399 at 1518.731 kb on + strand, within CCNA_01399 at 1518.731 kb on + strand, within CCNA_01399 at 1518.841 kb on + strand, within CCNA_01399 at 1518.885 kb on + strand, within CCNA_01399 at 1518.893 kb on - strand, within CCNA_01399 at 1518.924 kb on - strand, within CCNA_01399 at 1518.941 kb on - strand, within CCNA_01399 at 1519.033 kb on + strand, within CCNA_01399 at 1519.058 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.124 kb on + strand, within CCNA_01399 at 1519.196 kb on + strand, within CCNA_01399 at 1519.201 kb on + strand, within CCNA_01399 at 1519.204 kb on - strand, within CCNA_01399 at 1519.209 kb on - strand, within CCNA_01399 at 1519.209 kb on - strand, within CCNA_01399 at 1519.227 kb on + strand, within CCNA_01399 at 1519.227 kb on + strand, within CCNA_01399 at 1519.235 kb on - strand, within CCNA_01399 at 1519.264 kb on + strand, within CCNA_01399 at 1519.272 kb on - strand, within CCNA_01399 at 1519.321 kb on - strand, within CCNA_01399 at 1519.326 kb on - strand, within CCNA_01399 at 1519.326 kb on - strand, within CCNA_01399 at 1519.345 kb on + strand, within CCNA_01399 at 1519.361 kb on + strand, within CCNA_01399 at 1519.366 kb on + strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.369 kb on - strand, within CCNA_01399 at 1519.379 kb on - strand, within CCNA_01399 at 1519.409 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399 at 1519.434 kb on - strand, within CCNA_01399
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 1,516,840 + -0.0 1,516,907 + -0.1 1,516,907 + +0.9 1,516,920 - -0.6 1,517,826 + -1.2 1,517,834 - -1.9 1,517,902 - +1.8 1,517,911 + CCNA_01398 0.11 +0.4 1,517,931 - CCNA_01398 0.14 -0.3 1,517,933 - CCNA_01398 0.15 -0.9 1,517,957 + CCNA_01398 0.18 +0.3 1,517,957 + CCNA_01398 0.18 -0.1 1,517,965 - CCNA_01398 0.20 +1.8 1,517,979 + CCNA_01398 0.22 +1.1 1,517,987 - CCNA_01398 0.23 -0.2 1,517,987 - CCNA_01398 0.23 -0.3 1,517,992 - CCNA_01398 0.24 -1.4 1,518,006 + CCNA_01398 0.26 +0.6 1,518,007 + CCNA_01398 0.26 +0.4 1,518,061 - CCNA_01398 0.35 -0.3 1,518,092 + CCNA_01398 0.39 +1.3 1,518,124 + CCNA_01398 0.44 +0.2 1,518,124 + CCNA_01398 0.44 +0.2 1,518,132 - CCNA_01398 0.46 -0.2 1,518,182 - CCNA_01398 0.54 +1.3 1,518,271 - CCNA_01398 0.67 +0.2 1,518,388 - CCNA_01398 0.86 +0.5 1,518,472 + +0.1 1,518,472 + +0.4 1,518,472 + +0.6 1,518,480 - +1.5 1,518,480 - -0.9 1,518,480 - +0.8 1,518,514 + -0.1 1,518,514 + +1.1 1,518,535 + -0.6 1,518,547 + +0.4 1,518,547 + -0.8 1,518,554 + -0.0 1,518,555 - -0.3 1,518,555 - -0.2 1,518,681 + -0.2 1,518,704 + -1.3 1,518,705 - +0.6 1,518,712 - CCNA_01399 0.10 +0.1 1,518,712 - CCNA_01399 0.10 +0.6 1,518,712 - CCNA_01399 0.10 +0.9 1,518,712 - CCNA_01399 0.10 -1.1 1,518,731 + CCNA_01399 0.11 +0.4 1,518,731 + CCNA_01399 0.11 +0.4 1,518,841 + CCNA_01399 0.19 -1.2 1,518,885 + CCNA_01399 0.21 -0.6 1,518,893 - CCNA_01399 0.22 +1.1 1,518,924 - CCNA_01399 0.24 +0.6 1,518,941 - CCNA_01399 0.25 +1.3 1,519,033 + CCNA_01399 0.31 -0.9 1,519,058 + CCNA_01399 0.33 +0.6 1,519,124 + CCNA_01399 0.37 +0.3 1,519,124 + CCNA_01399 0.37 +0.8 1,519,124 + CCNA_01399 0.37 -0.2 1,519,124 + CCNA_01399 0.37 +1.8 1,519,196 + CCNA_01399 0.42 -2.8 1,519,201 + CCNA_01399 0.42 -0.9 1,519,204 - CCNA_01399 0.42 +0.2 1,519,209 - CCNA_01399 0.43 +0.1 1,519,209 - CCNA_01399 0.43 +0.8 1,519,227 + CCNA_01399 0.44 -1.3 1,519,227 + CCNA_01399 0.44 +0.2 1,519,235 - CCNA_01399 0.44 -0.3 1,519,264 + CCNA_01399 0.46 +0.6 1,519,272 - CCNA_01399 0.47 +0.5 1,519,321 - CCNA_01399 0.50 +0.3 1,519,326 - CCNA_01399 0.50 +0.5 1,519,326 - CCNA_01399 0.50 +2.3 1,519,345 + CCNA_01399 0.51 -2.0 1,519,361 + CCNA_01399 0.53 -1.8 1,519,366 + CCNA_01399 0.53 -0.3 1,519,369 - CCNA_01399 0.53 -0.4 1,519,369 - CCNA_01399 0.53 +0.5 1,519,369 - CCNA_01399 0.53 +0.1 1,519,379 - CCNA_01399 0.54 +1.1 1,519,409 - CCNA_01399 0.56 +0.5 1,519,434 - CCNA_01399 0.57 +0.8 1,519,434 - CCNA_01399 0.57 +0.5
Or see this region's nucleotide sequence