Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01223

Experiment: PYE with CHIR-090 40 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with CHIR-090 40 ug/mL
1,348,098	+				-1.4
1,348,107	+				-1.7
1,348,108	-				-2.5
1,348,115	+				-2.4
1,348,115	-				-2.8
1,348,137	+				-2.1
1,348,191	-		CCNA_01222	0.13	-2.1
1,348,193	+		CCNA_01222	0.14	-4.5
1,348,193	+		CCNA_01222	0.14	-1.3
1,348,204	+		CCNA_01222	0.15	-2.2
1,348,246	-		CCNA_01222	0.19	-1.5
1,348,310	-		CCNA_01222	0.26	-2.3
1,348,325	+		CCNA_01222	0.27	-3.2
1,348,325	+		CCNA_01222	0.27	-1.9
1,348,330	+		CCNA_01222	0.28	-1.5
1,348,459	+		CCNA_01222	0.42	-0.4
1,348,459	+		CCNA_01222	0.42	+0.3
1,348,459	+		CCNA_01222	0.42	-1.5
1,348,467	-		CCNA_01222	0.42	-3.9
1,348,467	-		CCNA_01222	0.42	-3.1
1,348,470	+		CCNA_01222	0.43	-3.2
1,348,484	-		CCNA_01222	0.44	-0.4
1,348,517	+		CCNA_01222	0.48	-2.9
1,348,525	-		CCNA_01222	0.48	-2.7
1,348,527	+		CCNA_01222	0.49	-2.8
1,348,535	-		CCNA_01222	0.49	-1.2
1,348,576	-		CCNA_01222	0.54	-3.8
1,348,746	+		CCNA_01222	0.72	-1.9
1,348,747	+		CCNA_01222	0.72	-3.1
1,348,755	-		CCNA_01222	0.73	-2.2
1,348,763	+		CCNA_01222	0.73	-0.7
1,348,792	+		CCNA_01222	0.76	-3.3
1,348,800	-		CCNA_01222	0.77	-3.3
1,348,808	+		CCNA_01222	0.78	-2.7
1,348,808	+		CCNA_01222	0.78	-2.4
1,348,822	+		CCNA_01222	0.80	-2.4
1,348,822	+		CCNA_01222	0.80	-3.7
1,348,825	-		CCNA_01222	0.80	-2.0
1,348,889	-		CCNA_01222	0.87	-1.6
1,348,894	-		CCNA_01222	0.87	-4.7
1,348,894	-		CCNA_01222	0.87	-2.8
1,348,931	+				-1.3
1,348,939	-				-1.5
1,348,939	-				-3.1
1,348,939	-				-1.5
1,349,019	+				-1.1
1,349,052	+				-0.7
1,349,073	+				-3.1
1,349,080	-				-2.6
1,349,081	-				-1.6
1,349,083	+				-0.4
1,349,091	-				-3.5
1,349,100	+				-2.4
1,349,109	-				-2.0
1,349,140	-				-1.6
1,349,143	-				-2.4
1,349,164	-				-2.8
1,349,164	-				-2.2
1,349,164	-				-2.3
1,349,174	-				-4.4
1,349,192	+		CCNA_01223	0.11	-3.7
1,349,192	+		CCNA_01223	0.11	-1.3
1,349,256	+		CCNA_01223	0.15	-1.7
1,349,342	-		CCNA_01223	0.20	-3.2
1,349,536	+		CCNA_01223	0.31	-0.8
1,349,546	-		CCNA_01223	0.31	-0.5
1,349,557	+		CCNA_01223	0.32	-2.2
1,349,565	-		CCNA_01223	0.33	-1.1
1,349,591	+		CCNA_01223	0.34	-2.4
1,349,605	-		CCNA_01223	0.35	-1.6
1,349,667	+		CCNA_01223	0.38	-1.5
1,349,667	+		CCNA_01223	0.38	-2.6
1,349,667	+		CCNA_01223	0.38	-2.1
1,349,667	+		CCNA_01223	0.38	-2.1
1,349,667	+		CCNA_01223	0.38	-2.2
1,349,667	+		CCNA_01223	0.38	-2.1
1,349,667	+		CCNA_01223	0.38	-1.7
1,349,673	-		CCNA_01223	0.39	-1.6
1,349,675	-		CCNA_01223	0.39	-1.8
1,349,675	-		CCNA_01223	0.39	-3.7
1,349,675	-		CCNA_01223	0.39	-1.7
1,349,675	-		CCNA_01223	0.39	-2.7
1,349,692	+		CCNA_01223	0.40	-1.6
1,349,698	+		CCNA_01223	0.40	-2.1
1,349,700	-		CCNA_01223	0.40	-1.9
1,349,700	-		CCNA_01223	0.40	-1.3
1,349,702	+		CCNA_01223	0.40	-1.8
1,349,762	+		CCNA_01223	0.44	-2.5
1,349,789	+		CCNA_01223	0.46	-1.4
1,349,807	+		CCNA_01223	0.47	-1.5
1,349,807	+		CCNA_01223	0.47	-3.4
1,349,807	+		CCNA_01223	0.47	-1.6
1,349,812	+		CCNA_01223	0.47	-3.0
1,349,818	+		CCNA_01223	0.47	-1.5
1,349,820	-		CCNA_01223	0.47	-2.5
1,349,820	-		CCNA_01223	0.47	-0.9
1,349,843	-		CCNA_01223	0.49	-1.5
1,349,902	-		CCNA_01223	0.52	-2.6
1,349,916	+		CCNA_01223	0.53	-1.5
1,349,943	-		CCNA_01223	0.55	-1.3
1,349,981	-		CCNA_01223	0.57	-3.2
1,349,991	-		CCNA_01223	0.57	-2.0
1,350,031	+		CCNA_01223	0.60	-1.5
1,350,034	-		CCNA_01223	0.60	-1.6
1,350,037	+		CCNA_01223	0.60	-1.9
1,350,074	-		CCNA_01223	0.62	-1.7
1,350,078	+		CCNA_01223	0.62	-3.5
1,350,085	+		CCNA_01223	0.63	-3.1
1,350,093	-		CCNA_01223	0.63	-1.9
1,350,197	-		CCNA_01223	0.69	-2.4
1,350,226	+		CCNA_01223	0.71	-1.1
1,350,266	+		CCNA_01223	0.73	-2.6
1,350,266	+		CCNA_01223	0.73	-4.4
1,350,305	-		CCNA_01223	0.76	-2.4
1,350,355	+		CCNA_01223	0.78	-2.0
1,350,355	+		CCNA_01223	0.78	-2.1
1,350,358	-		CCNA_01223	0.79	-2.3
1,350,409	-		CCNA_01223	0.82	-3.5
1,350,422	+		CCNA_01223	0.82	-2.6
1,350,430	-		CCNA_01223	0.83	-4.8
1,350,501	-		CCNA_01223	0.87	+0.0
1,350,505	-		CCNA_01223	0.87	-3.0
1,350,559	+				-1.1
1,350,559	+				-1.9
1,350,559	+				-2.7
1,350,564	+				-3.0
1,350,564	+				-3.2
1,350,569	+				-1.7
1,350,572	-				-2.6
1,350,572	-				-1.4
1,350,572	-				-2.2
1,350,576	+				-1.6
1,350,576	+				-4.2
1,350,576	+				-2.8
1,350,576	+				-2.2
1,350,577	-				-0.8
1,350,577	-				-2.9
1,350,577	-				-3.3
1,350,577	-				-2.5
1,350,584	-				-2.5
1,350,650	+				-2.2
1,350,653	-				-0.9
1,350,658	-				-3.0
1,350,671	+				-2.2
1,350,726	+				-2.0
1,350,734	-				-0.5
1,350,862	-				+0.3
1,350,902	-		CCNA_01224	0.13	-1.1
1,350,902	-		CCNA_01224	0.13	-0.6
1,351,042	+		CCNA_01224	0.23	-0.7
1,351,049	-		CCNA_01224	0.24	-0.8
1,351,053	+		CCNA_01224	0.24	-0.9
1,351,124	-		CCNA_01224	0.30	+0.9
1,351,144	+		CCNA_01224	0.31	-0.6
1,351,168	-		CCNA_01224	0.33	-2.0
1,351,184	+		CCNA_01224	0.34	-1.5
1,351,227	-		CCNA_01224	0.37	-1.0
1,351,276	+		CCNA_01224	0.41	-0.5
1,351,333	-		CCNA_01224	0.45	-0.5
1,351,397	-		CCNA_01224	0.50	-2.8
1,351,416	+		CCNA_01224	0.52	+0.1
1,351,424	-		CCNA_01224	0.52	-3.0
1,351,487	-		CCNA_01224	0.57	-1.5
1,351,514	-		CCNA_01224	0.59	-2.0
1,351,543	+		CCNA_01224	0.61	-0.9
1,351,646	-		CCNA_01224	0.69	-2.5
1,351,658	+		CCNA_01224	0.70	-0.8
1,351,667	-		CCNA_01224	0.70	-2.3
1,351,678	-		CCNA_01224	0.71	-0.7
1,351,678	-		CCNA_01224	0.71	-0.1
1,351,695	-		CCNA_01224	0.73	+0.1