Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01220

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01218 and CCNA_01219 overlap by 4 nucleotidesCCNA_01219 and CCNA_01220 are separated by 68 nucleotidesCCNA_01220 and CCNA_01221 are separated by 3 nucleotidesCCNA_01221 and CCNA_01222 are separated by 67 nucleotides CCNA_01218: CCNA_01218 - sphingosine kinase/diacylglycerol kinase-related protein, at 1,344,578 to 1,345,570 _01218 CCNA_01219: CCNA_01219 - putative cytosolic protein, at 1,345,567 to 1,346,448 _01219 CCNA_01220: CCNA_01220 - 7-keto-8-aminopelargonate synthetase, at 1,346,517 to 1,347,731 _01220 CCNA_01221: CCNA_01221 - acyl carrier protein, at 1,347,735 to 1,347,995 _01221 CCNA_01222: CCNA_01222 - NADH-ubiquinone oxidoreductase, at 1,348,063 to 1,349,016 _01222 Position (kb) 1346 1347 1348Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1345.547 kb on + strandat 1345.550 kb on - strandat 1345.555 kb on - strandat 1345.631 kb on + strandat 1345.656 kb on + strand, within CCNA_01219at 1345.680 kb on + strand, within CCNA_01219at 1345.696 kb on - strand, within CCNA_01219at 1345.744 kb on - strand, within CCNA_01219at 1345.763 kb on + strand, within CCNA_01219at 1345.798 kb on - strand, within CCNA_01219at 1345.869 kb on + strand, within CCNA_01219at 1345.877 kb on - strand, within CCNA_01219at 1345.917 kb on - strand, within CCNA_01219at 1345.949 kb on - strand, within CCNA_01219at 1345.949 kb on - strand, within CCNA_01219at 1345.949 kb on - strand, within CCNA_01219at 1345.980 kb on + strand, within CCNA_01219at 1346.030 kb on - strand, within CCNA_01219at 1346.073 kb on - strand, within CCNA_01219at 1346.122 kb on + strand, within CCNA_01219at 1346.182 kb on + strand, within CCNA_01219at 1346.182 kb on + strand, within CCNA_01219at 1346.182 kb on + strand, within CCNA_01219at 1346.208 kb on + strand, within CCNA_01219at 1346.213 kb on + strand, within CCNA_01219at 1346.223 kb on + strand, within CCNA_01219at 1346.231 kb on - strand, within CCNA_01219at 1346.231 kb on - strand, within CCNA_01219at 1346.231 kb on - strand, within CCNA_01219at 1346.237 kb on - strand, within CCNA_01219at 1346.256 kb on - strand, within CCNA_01219at 1346.260 kb on + strand, within CCNA_01219at 1346.273 kb on - strand, within CCNA_01219at 1346.289 kb on - strand, within CCNA_01219at 1346.412 kb on + strandat 1346.418 kb on + strandat 1346.420 kb on - strandat 1346.426 kb on - strandat 1346.530 kb on + strandat 1346.538 kb on - strandat 1346.558 kb on - strandat 1346.578 kb on + strandat 1346.578 kb on + strandat 1346.586 kb on - strandat 1346.586 kb on - strandat 1346.598 kb on - strandat 1346.600 kb on + strandat 1346.759 kb on + strand, within CCNA_01220at 1346.759 kb on + strand, within CCNA_01220at 1346.843 kb on + strand, within CCNA_01220at 1347.083 kb on + strand, within CCNA_01220at 1347.093 kb on - strand, within CCNA_01220at 1347.206 kb on - strand, within CCNA_01220at 1347.289 kb on - strand, within CCNA_01220at 1347.291 kb on + strand, within CCNA_01220at 1347.294 kb on - strand, within CCNA_01220at 1347.299 kb on - strand, within CCNA_01220at 1347.299 kb on - strand, within CCNA_01220at 1347.299 kb on - strand, within CCNA_01220at 1347.299 kb on - strand, within CCNA_01220at 1347.299 kb on - strand, within CCNA_01220at 1347.320 kb on - strand, within CCNA_01220at 1347.403 kb on + strand, within CCNA_01220at 1347.511 kb on - strand, within CCNA_01220at 1347.526 kb on + strand, within CCNA_01220at 1347.534 kb on - strand, within CCNA_01220at 1347.545 kb on - strand, within CCNA_01220at 1347.561 kb on + strand, within CCNA_01220at 1347.564 kb on - strand, within CCNA_01220at 1347.569 kb on - strand, within CCNA_01220at 1347.620 kb on - strandat 1347.648 kb on - strandat 1347.653 kb on + strandat 1347.661 kb on - strandat 1347.661 kb on - strandat 1347.661 kb on - strandat 1347.670 kb on - strandat 1347.685 kb on + strandat 1347.685 kb on + strandat 1347.685 kb on + strandat 1347.693 kb on - strandat 1347.693 kb on - strandat 1347.693 kb on - strandat 1347.714 kb on - strandat 1347.714 kb on - strandat 1347.754 kb on + strandat 1347.762 kb on - strand, within CCNA_01221at 1347.792 kb on - strand, within CCNA_01221at 1347.909 kb on + strand, within CCNA_01221at 1347.914 kb on + strand, within CCNA_01221at 1347.924 kb on + strand, within CCNA_01221at 1347.924 kb on + strand, within CCNA_01221at 1347.941 kb on + strand, within CCNA_01221at 1347.993 kb on - strandat 1348.098 kb on + strandat 1348.107 kb on + strandat 1348.108 kb on - strandat 1348.115 kb on + strandat 1348.115 kb on - strandat 1348.137 kb on + strandat 1348.191 kb on - strand, within CCNA_01222at 1348.193 kb on + strand, within CCNA_01222at 1348.193 kb on + strand, within CCNA_01222at 1348.204 kb on + strand, within CCNA_01222at 1348.246 kb on - strand, within CCNA_01222at 1348.310 kb on - strand, within CCNA_01222at 1348.325 kb on + strand, within CCNA_01222at 1348.325 kb on + strand, within CCNA_01222at 1348.330 kb on + strand, within CCNA_01222at 1348.459 kb on + strand, within CCNA_01222at 1348.459 kb on + strand, within CCNA_01222at 1348.459 kb on + strand, within CCNA_01222at 1348.467 kb on - strand, within CCNA_01222at 1348.467 kb on - strand, within CCNA_01222at 1348.470 kb on + strand, within CCNA_01222at 1348.484 kb on - strand, within CCNA_01222at 1348.517 kb on + strand, within CCNA_01222at 1348.525 kb on - strand, within CCNA_01222at 1348.527 kb on + strand, within CCNA_01222at 1348.535 kb on - strand, within CCNA_01222at 1348.576 kb on - strand, within CCNA_01222

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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1,345,547 + -1.9
1,345,550 - -2.9
1,345,555 - -2.0
1,345,631 + -0.9
1,345,656 + CCNA_01219 0.10 -0.9
1,345,680 + CCNA_01219 0.13 -2.7
1,345,696 - CCNA_01219 0.15 -2.0
1,345,744 - CCNA_01219 0.20 -2.6
1,345,763 + CCNA_01219 0.22 -1.4
1,345,798 - CCNA_01219 0.26 -1.4
1,345,869 + CCNA_01219 0.34 -0.3
1,345,877 - CCNA_01219 0.35 -0.0
1,345,917 - CCNA_01219 0.40 -1.6
1,345,949 - CCNA_01219 0.43 -1.1
1,345,949 - CCNA_01219 0.43 -1.5
1,345,949 - CCNA_01219 0.43 -1.1
1,345,980 + CCNA_01219 0.47 -1.9
1,346,030 - CCNA_01219 0.52 -0.4
1,346,073 - CCNA_01219 0.57 -1.9
1,346,122 + CCNA_01219 0.63 -0.3
1,346,182 + CCNA_01219 0.70 -1.2
1,346,182 + CCNA_01219 0.70 -2.2
1,346,182 + CCNA_01219 0.70 -2.0
1,346,208 + CCNA_01219 0.73 +0.4
1,346,213 + CCNA_01219 0.73 -5.0
1,346,223 + CCNA_01219 0.74 -2.7
1,346,231 - CCNA_01219 0.75 -3.2
1,346,231 - CCNA_01219 0.75 -0.7
1,346,231 - CCNA_01219 0.75 -2.3
1,346,237 - CCNA_01219 0.76 +0.6
1,346,256 - CCNA_01219 0.78 -0.6
1,346,260 + CCNA_01219 0.79 -1.9
1,346,273 - CCNA_01219 0.80 -2.2
1,346,289 - CCNA_01219 0.82 +0.3
1,346,412 + -0.5
1,346,418 + +0.7
1,346,420 - -2.0
1,346,426 - -1.0
1,346,530 + -0.1
1,346,538 - +0.6
1,346,558 - -3.2
1,346,578 + -3.4
1,346,578 + -1.7
1,346,586 - -2.0
1,346,586 - -1.6
1,346,598 - -4.3
1,346,600 + -1.5
1,346,759 + CCNA_01220 0.20 -2.3
1,346,759 + CCNA_01220 0.20 -3.5
1,346,843 + CCNA_01220 0.27 -1.7
1,347,083 + CCNA_01220 0.47 -1.4
1,347,093 - CCNA_01220 0.47 -2.0
1,347,206 - CCNA_01220 0.57 -3.9
1,347,289 - CCNA_01220 0.64 -2.9
1,347,291 + CCNA_01220 0.64 -4.1
1,347,294 - CCNA_01220 0.64 -2.8
1,347,299 - CCNA_01220 0.64 -1.5
1,347,299 - CCNA_01220 0.64 -3.0
1,347,299 - CCNA_01220 0.64 -0.1
1,347,299 - CCNA_01220 0.64 -1.9
1,347,299 - CCNA_01220 0.64 -2.9
1,347,320 - CCNA_01220 0.66 -2.7
1,347,403 + CCNA_01220 0.73 +1.6
1,347,511 - CCNA_01220 0.82 -2.1
1,347,526 + CCNA_01220 0.83 -0.7
1,347,534 - CCNA_01220 0.84 -2.4
1,347,545 - CCNA_01220 0.85 -3.1
1,347,561 + CCNA_01220 0.86 -2.3
1,347,564 - CCNA_01220 0.86 -2.5
1,347,569 - CCNA_01220 0.87 -2.9
1,347,620 - -2.5
1,347,648 - -2.9
1,347,653 + -1.9
1,347,661 - -2.6
1,347,661 - -2.9
1,347,661 - -1.5
1,347,670 - -1.6
1,347,685 + -2.4
1,347,685 + -2.6
1,347,685 + -4.0
1,347,693 - -3.0
1,347,693 - -1.4
1,347,693 - -2.9
1,347,714 - -2.4
1,347,714 - -0.3
1,347,754 + -2.9
1,347,762 - CCNA_01221 0.10 -0.8
1,347,792 - CCNA_01221 0.22 -2.0
1,347,909 + CCNA_01221 0.67 -2.4
1,347,914 + CCNA_01221 0.69 -2.2
1,347,924 + CCNA_01221 0.72 -2.7
1,347,924 + CCNA_01221 0.72 -3.6
1,347,941 + CCNA_01221 0.79 -2.2
1,347,993 - -0.9
1,348,098 + -1.4
1,348,107 + -1.7
1,348,108 - -2.5
1,348,115 + -2.4
1,348,115 - -2.8
1,348,137 + -2.1
1,348,191 - CCNA_01222 0.13 -2.1
1,348,193 + CCNA_01222 0.14 -4.5
1,348,193 + CCNA_01222 0.14 -1.3
1,348,204 + CCNA_01222 0.15 -2.2
1,348,246 - CCNA_01222 0.19 -1.5
1,348,310 - CCNA_01222 0.26 -2.3
1,348,325 + CCNA_01222 0.27 -3.2
1,348,325 + CCNA_01222 0.27 -1.9
1,348,330 + CCNA_01222 0.28 -1.5
1,348,459 + CCNA_01222 0.42 -0.4
1,348,459 + CCNA_01222 0.42 +0.3
1,348,459 + CCNA_01222 0.42 -1.5
1,348,467 - CCNA_01222 0.42 -3.9
1,348,467 - CCNA_01222 0.42 -3.1
1,348,470 + CCNA_01222 0.43 -3.2
1,348,484 - CCNA_01222 0.44 -0.4
1,348,517 + CCNA_01222 0.48 -2.9
1,348,525 - CCNA_01222 0.48 -2.7
1,348,527 + CCNA_01222 0.49 -2.8
1,348,535 - CCNA_01222 0.49 -1.2
1,348,576 - CCNA_01222 0.54 -3.8

Or see this region's nucleotide sequence