Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01217

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01216 and CCNA_01217 are separated by 76 nucleotidesCCNA_01217 and CCNA_01218 overlap by 82 nucleotidesCCNA_01218 and CCNA_01219 overlap by 4 nucleotides CCNA_01216: CCNA_01216 - phosphohydrolase, Icc family, at 1,342,538 to 1,343,455 _01216 CCNA_01217: CCNA_01217 - phosphatidylglycerophosphate synthase, at 1,343,532 to 1,344,659 _01217 CCNA_01218: CCNA_01218 - sphingosine kinase/diacylglycerol kinase-related protein, at 1,344,578 to 1,345,570 _01218 CCNA_01219: CCNA_01219 - putative cytosolic protein, at 1,345,567 to 1,346,448 _01219 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1342.553 kb on - strandat 1342.558 kb on + strandat 1342.566 kb on - strandat 1342.588 kb on + strandat 1342.706 kb on + strand, within CCNA_01216at 1342.738 kb on - strand, within CCNA_01216at 1342.743 kb on - strand, within CCNA_01216at 1342.743 kb on - strand, within CCNA_01216at 1342.743 kb on - strand, within CCNA_01216at 1342.766 kb on - strand, within CCNA_01216at 1342.766 kb on - strand, within CCNA_01216at 1342.781 kb on + strand, within CCNA_01216at 1342.783 kb on + strand, within CCNA_01216at 1342.789 kb on - strand, within CCNA_01216at 1342.791 kb on + strand, within CCNA_01216at 1342.797 kb on - strand, within CCNA_01216at 1342.818 kb on - strand, within CCNA_01216at 1342.826 kb on + strand, within CCNA_01216at 1342.869 kb on + strand, within CCNA_01216at 1342.877 kb on - strand, within CCNA_01216at 1342.877 kb on - strand, within CCNA_01216at 1342.877 kb on - strand, within CCNA_01216at 1342.901 kb on + strand, within CCNA_01216at 1342.901 kb on + strand, within CCNA_01216at 1342.928 kb on + strand, within CCNA_01216at 1342.928 kb on + strand, within CCNA_01216at 1342.938 kb on + strand, within CCNA_01216at 1342.946 kb on - strand, within CCNA_01216at 1342.948 kb on - strand, within CCNA_01216at 1342.948 kb on - strand, within CCNA_01216at 1342.953 kb on + strand, within CCNA_01216at 1342.961 kb on - strand, within CCNA_01216at 1342.973 kb on + strand, within CCNA_01216at 1342.994 kb on + strand, within CCNA_01216at 1343.027 kb on - strand, within CCNA_01216at 1343.041 kb on + strand, within CCNA_01216at 1343.041 kb on + strand, within CCNA_01216at 1343.041 kb on + strand, within CCNA_01216at 1343.049 kb on - strand, within CCNA_01216at 1343.062 kb on - strand, within CCNA_01216at 1343.089 kb on + strand, within CCNA_01216at 1343.138 kb on + strand, within CCNA_01216at 1343.138 kb on + strand, within CCNA_01216at 1343.141 kb on - strand, within CCNA_01216at 1343.155 kb on + strand, within CCNA_01216at 1343.199 kb on + strand, within CCNA_01216at 1343.253 kb on + strand, within CCNA_01216at 1343.290 kb on + strand, within CCNA_01216at 1343.319 kb on + strand, within CCNA_01216at 1343.321 kb on + strand, within CCNA_01216at 1343.321 kb on + strand, within CCNA_01216at 1343.321 kb on + strand, within CCNA_01216at 1343.321 kb on - strand, within CCNA_01216at 1343.328 kb on + strand, within CCNA_01216at 1343.329 kb on - strand, within CCNA_01216at 1343.329 kb on - strand, within CCNA_01216at 1343.389 kb on + strandat 1343.397 kb on - strandat 1343.397 kb on - strandat 1343.509 kb on + strandat 1343.518 kb on + strandat 1343.519 kb on + strandat 1343.563 kb on + strandat 1343.605 kb on + strandat 1343.608 kb on + strandat 1343.610 kb on + strandat 1343.635 kb on - strandat 1343.656 kb on - strand, within CCNA_01217at 1343.662 kb on + strand, within CCNA_01217at 1343.695 kb on + strand, within CCNA_01217at 1343.726 kb on - strand, within CCNA_01217at 1343.749 kb on + strand, within CCNA_01217at 1343.754 kb on + strand, within CCNA_01217at 1343.762 kb on - strand, within CCNA_01217at 1343.762 kb on - strand, within CCNA_01217at 1343.779 kb on + strand, within CCNA_01217at 1343.802 kb on + strand, within CCNA_01217at 1343.815 kb on - strand, within CCNA_01217at 1343.894 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.901 kb on + strand, within CCNA_01217at 1343.903 kb on + strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.909 kb on - strand, within CCNA_01217at 1343.913 kb on - strand, within CCNA_01217at 1343.918 kb on + strand, within CCNA_01217at 1344.032 kb on + strand, within CCNA_01217at 1344.040 kb on - strand, within CCNA_01217at 1344.040 kb on - strand, within CCNA_01217at 1344.042 kb on + strand, within CCNA_01217at 1344.077 kb on + strand, within CCNA_01217at 1344.082 kb on + strand, within CCNA_01217at 1344.083 kb on + strand, within CCNA_01217at 1344.110 kb on - strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.168 kb on + strand, within CCNA_01217at 1344.186 kb on + strand, within CCNA_01217at 1344.194 kb on - strand, within CCNA_01217at 1344.204 kb on - strand, within CCNA_01217at 1344.231 kb on + strand, within CCNA_01217at 1344.231 kb on + strand, within CCNA_01217at 1344.232 kb on + strand, within CCNA_01217at 1344.244 kb on - strand, within CCNA_01217at 1344.306 kb on - strand, within CCNA_01217at 1344.317 kb on - strand, within CCNA_01217at 1344.347 kb on - strand, within CCNA_01217at 1344.352 kb on - strand, within CCNA_01217at 1344.369 kb on - strand, within CCNA_01217at 1344.433 kb on - strand, within CCNA_01217at 1344.453 kb on + strand, within CCNA_01217at 1344.453 kb on - strand, within CCNA_01217at 1344.501 kb on - strand, within CCNA_01217at 1344.517 kb on + strand, within CCNA_01217at 1344.542 kb on + strand, within CCNA_01217at 1344.566 kb on + strandat 1344.573 kb on + strandat 1344.636 kb on + strandat 1344.636 kb on + strandat 1344.664 kb on + strandat 1344.672 kb on - strandat 1344.732 kb on - strand, within CCNA_01218at 1344.772 kb on - strand, within CCNA_01218at 1344.800 kb on + strand, within CCNA_01218at 1344.800 kb on + strand, within CCNA_01218at 1344.808 kb on - strand, within CCNA_01218at 1344.808 kb on - strand, within CCNA_01218at 1344.808 kb on - strand, within CCNA_01218at 1344.808 kb on - strand, within CCNA_01218at 1344.808 kb on - strand, within CCNA_01218at 1344.808 kb on - strand, within CCNA_01218at 1344.915 kb on + strand, within CCNA_01218at 1344.924 kb on - strand, within CCNA_01218at 1345.048 kb on + strand, within CCNA_01218at 1345.101 kb on - strand, within CCNA_01218at 1345.109 kb on - strand, within CCNA_01218at 1345.127 kb on + strand, within CCNA_01218at 1345.148 kb on - strand, within CCNA_01218at 1345.154 kb on - strand, within CCNA_01218at 1345.172 kb on + strand, within CCNA_01218at 1345.184 kb on + strand, within CCNA_01218at 1345.186 kb on + strand, within CCNA_01218at 1345.194 kb on - strand, within CCNA_01218at 1345.243 kb on - strand, within CCNA_01218at 1345.245 kb on + strand, within CCNA_01218at 1345.321 kb on + strand, within CCNA_01218at 1345.381 kb on + strand, within CCNA_01218at 1345.381 kb on + strand, within CCNA_01218at 1345.381 kb on + strand, within CCNA_01218at 1345.381 kb on + strand, within CCNA_01218at 1345.389 kb on - strand, within CCNA_01218at 1345.423 kb on - strand, within CCNA_01218at 1345.507 kb on + strandat 1345.515 kb on - strandat 1345.547 kb on + strandat 1345.550 kb on - strandat 1345.555 kb on - strandat 1345.631 kb on + strandat 1345.656 kb on + strand, within CCNA_01219

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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1,342,553 - +0.4
1,342,558 + -0.1
1,342,566 - +0.3
1,342,588 + -1.6
1,342,706 + CCNA_01216 0.18 +0.4
1,342,738 - CCNA_01216 0.22 -0.0
1,342,743 - CCNA_01216 0.22 +0.0
1,342,743 - CCNA_01216 0.22 -0.1
1,342,743 - CCNA_01216 0.22 -0.3
1,342,766 - CCNA_01216 0.25 -0.5
1,342,766 - CCNA_01216 0.25 +0.2
1,342,781 + CCNA_01216 0.26 -1.5
1,342,783 + CCNA_01216 0.27 +0.8
1,342,789 - CCNA_01216 0.27 -0.2
1,342,791 + CCNA_01216 0.28 -1.2
1,342,797 - CCNA_01216 0.28 -0.1
1,342,818 - CCNA_01216 0.31 +0.6
1,342,826 + CCNA_01216 0.31 -1.0
1,342,869 + CCNA_01216 0.36 +0.5
1,342,877 - CCNA_01216 0.37 -0.7
1,342,877 - CCNA_01216 0.37 -0.0
1,342,877 - CCNA_01216 0.37 -1.4
1,342,901 + CCNA_01216 0.40 -0.2
1,342,901 + CCNA_01216 0.40 +0.3
1,342,928 + CCNA_01216 0.42 -1.1
1,342,928 + CCNA_01216 0.42 +1.9
1,342,938 + CCNA_01216 0.44 -2.2
1,342,946 - CCNA_01216 0.44 -0.5
1,342,948 - CCNA_01216 0.45 -0.2
1,342,948 - CCNA_01216 0.45 -0.5
1,342,953 + CCNA_01216 0.45 -0.5
1,342,961 - CCNA_01216 0.46 -0.5
1,342,973 + CCNA_01216 0.47 +0.1
1,342,994 + CCNA_01216 0.50 -0.4
1,343,027 - CCNA_01216 0.53 +0.3
1,343,041 + CCNA_01216 0.55 -0.4
1,343,041 + CCNA_01216 0.55 +0.1
1,343,041 + CCNA_01216 0.55 -1.5
1,343,049 - CCNA_01216 0.56 -0.5
1,343,062 - CCNA_01216 0.57 -0.2
1,343,089 + CCNA_01216 0.60 -1.8
1,343,138 + CCNA_01216 0.65 -0.6
1,343,138 + CCNA_01216 0.65 -2.4
1,343,141 - CCNA_01216 0.66 -1.3
1,343,155 + CCNA_01216 0.67 -1.2
1,343,199 + CCNA_01216 0.72 -0.3
1,343,253 + CCNA_01216 0.78 -3.5
1,343,290 + CCNA_01216 0.82 -0.6
1,343,319 + CCNA_01216 0.85 +0.9
1,343,321 + CCNA_01216 0.85 -0.1
1,343,321 + CCNA_01216 0.85 +0.5
1,343,321 + CCNA_01216 0.85 +0.8
1,343,321 - CCNA_01216 0.85 -0.6
1,343,328 + CCNA_01216 0.86 -2.0
1,343,329 - CCNA_01216 0.86 -0.6
1,343,329 - CCNA_01216 0.86 -0.4
1,343,389 + -1.5
1,343,397 - +0.3
1,343,397 - -1.2
1,343,509 + -0.1
1,343,518 + +0.7
1,343,519 + -0.1
1,343,563 + -3.5
1,343,605 + -1.8
1,343,608 + -1.1
1,343,610 + -3.5
1,343,635 - -1.6
1,343,656 - CCNA_01217 0.11 -2.2
1,343,662 + CCNA_01217 0.12 -2.7
1,343,695 + CCNA_01217 0.14 -3.0
1,343,726 - CCNA_01217 0.17 -0.1
1,343,749 + CCNA_01217 0.19 -3.1
1,343,754 + CCNA_01217 0.20 -2.3
1,343,762 - CCNA_01217 0.20 -1.6
1,343,762 - CCNA_01217 0.20 -1.6
1,343,779 + CCNA_01217 0.22 -2.6
1,343,802 + CCNA_01217 0.24 -1.4
1,343,815 - CCNA_01217 0.25 -3.2
1,343,894 + CCNA_01217 0.32 -3.2
1,343,901 + CCNA_01217 0.33 -0.7
1,343,901 + CCNA_01217 0.33 -1.8
1,343,901 + CCNA_01217 0.33 -2.0
1,343,901 + CCNA_01217 0.33 -3.0
1,343,901 + CCNA_01217 0.33 -1.3
1,343,901 + CCNA_01217 0.33 -2.6
1,343,901 + CCNA_01217 0.33 -2.8
1,343,901 + CCNA_01217 0.33 -2.6
1,343,901 + CCNA_01217 0.33 -3.7
1,343,901 + CCNA_01217 0.33 -0.7
1,343,901 + CCNA_01217 0.33 +0.1
1,343,901 + CCNA_01217 0.33 -2.7
1,343,901 + CCNA_01217 0.33 -0.2
1,343,901 + CCNA_01217 0.33 -2.6
1,343,901 + CCNA_01217 0.33 -1.1
1,343,901 + CCNA_01217 0.33 -4.7
1,343,901 + CCNA_01217 0.33 -2.8
1,343,901 + CCNA_01217 0.33 -2.9
1,343,903 + CCNA_01217 0.33 -1.3
1,343,909 - CCNA_01217 0.33 -1.7
1,343,909 - CCNA_01217 0.33 -0.8
1,343,909 - CCNA_01217 0.33 -1.7
1,343,909 - CCNA_01217 0.33 -2.6
1,343,909 - CCNA_01217 0.33 +0.1
1,343,909 - CCNA_01217 0.33 -2.7
1,343,909 - CCNA_01217 0.33 -4.3
1,343,909 - CCNA_01217 0.33 -0.2
1,343,909 - CCNA_01217 0.33 -2.3
1,343,909 - CCNA_01217 0.33 -1.7
1,343,909 - CCNA_01217 0.33 -1.4
1,343,913 - CCNA_01217 0.34 -2.4
1,343,918 + CCNA_01217 0.34 -3.4
1,344,032 + CCNA_01217 0.44 -1.9
1,344,040 - CCNA_01217 0.45 +1.4
1,344,040 - CCNA_01217 0.45 -2.6
1,344,042 + CCNA_01217 0.45 -2.1
1,344,077 + CCNA_01217 0.48 +0.6
1,344,082 + CCNA_01217 0.49 -1.7
1,344,083 + CCNA_01217 0.49 -0.7
1,344,110 - CCNA_01217 0.51 -0.1
1,344,168 + CCNA_01217 0.56 -0.1
1,344,168 + CCNA_01217 0.56 -2.7
1,344,168 + CCNA_01217 0.56 -3.6
1,344,168 + CCNA_01217 0.56 -2.3
1,344,168 + CCNA_01217 0.56 -2.3
1,344,168 + CCNA_01217 0.56 -2.2
1,344,168 + CCNA_01217 0.56 -2.4
1,344,186 + CCNA_01217 0.58 -1.5
1,344,194 - CCNA_01217 0.59 -0.4
1,344,204 - CCNA_01217 0.60 -1.9
1,344,231 + CCNA_01217 0.62 -1.8
1,344,231 + CCNA_01217 0.62 -2.4
1,344,232 + CCNA_01217 0.62 -3.4
1,344,244 - CCNA_01217 0.63 -4.3
1,344,306 - CCNA_01217 0.69 -1.0
1,344,317 - CCNA_01217 0.70 -2.4
1,344,347 - CCNA_01217 0.72 -0.7
1,344,352 - CCNA_01217 0.73 -2.0
1,344,369 - CCNA_01217 0.74 -2.0
1,344,433 - CCNA_01217 0.80 -0.3
1,344,453 + CCNA_01217 0.82 -1.7
1,344,453 - CCNA_01217 0.82 +2.5
1,344,501 - CCNA_01217 0.86 +0.6
1,344,517 + CCNA_01217 0.87 -1.9
1,344,542 + CCNA_01217 0.90 -1.5
1,344,566 + -3.1
1,344,573 + -3.2
1,344,636 + -1.9
1,344,636 + -2.8
1,344,664 + +0.4
1,344,672 - -0.1
1,344,732 - CCNA_01218 0.16 -1.2
1,344,772 - CCNA_01218 0.20 -2.6
1,344,800 + CCNA_01218 0.22 -2.4
1,344,800 + CCNA_01218 0.22 -3.3
1,344,808 - CCNA_01218 0.23 -0.7
1,344,808 - CCNA_01218 0.23 -2.9
1,344,808 - CCNA_01218 0.23 -2.6
1,344,808 - CCNA_01218 0.23 -2.5
1,344,808 - CCNA_01218 0.23 -0.9
1,344,808 - CCNA_01218 0.23 -1.9
1,344,915 + CCNA_01218 0.34 -2.6
1,344,924 - CCNA_01218 0.35 -2.3
1,345,048 + CCNA_01218 0.47 -2.3
1,345,101 - CCNA_01218 0.53 -1.6
1,345,109 - CCNA_01218 0.53 -1.5
1,345,127 + CCNA_01218 0.55 -2.3
1,345,148 - CCNA_01218 0.57 -2.6
1,345,154 - CCNA_01218 0.58 -1.8
1,345,172 + CCNA_01218 0.60 -2.3
1,345,184 + CCNA_01218 0.61 -2.4
1,345,186 + CCNA_01218 0.61 -1.3
1,345,194 - CCNA_01218 0.62 -1.7
1,345,243 - CCNA_01218 0.67 -1.8
1,345,245 + CCNA_01218 0.67 -1.8
1,345,321 + CCNA_01218 0.75 -2.6
1,345,381 + CCNA_01218 0.81 -1.8
1,345,381 + CCNA_01218 0.81 -3.9
1,345,381 + CCNA_01218 0.81 -3.6
1,345,381 + CCNA_01218 0.81 -3.0
1,345,389 - CCNA_01218 0.82 -2.8
1,345,423 - CCNA_01218 0.85 -3.2
1,345,507 + -0.8
1,345,515 - -2.3
1,345,547 + -1.9
1,345,550 - -2.9
1,345,555 - -2.0
1,345,631 + -0.9
1,345,656 + CCNA_01219 0.10 -0.9

Or see this region's nucleotide sequence