Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00904

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00903 and CCNA_00904 overlap by 4 nucleotidesCCNA_00904 and CCNA_00905 are separated by 28 nucleotidesCCNA_00905 and CCNA_00906 are separated by 69 nucleotides CCNA_00903: CCNA_00903 - inositol transport ATP-binding protein IatA, at 982,938 to 984,485 _00903 CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480 _00904 CCNA_00905: CCNA_00905 - exonuclease-endonuclease-phosphatase (EEP1) protein, at 985,509 to 986,396 _00905 CCNA_00906: CCNA_00906 - hypothetical protein, at 986,466 to 987,380 _00906 Position (kb) 984 985 986Strain fitness (log2 ratio) -2 -1 0 1 2 3at 983.527 kb on + strand, within CCNA_00903at 983.543 kb on + strand, within CCNA_00903at 983.543 kb on + strand, within CCNA_00903at 983.543 kb on + strand, within CCNA_00903at 983.551 kb on - strand, within CCNA_00903at 983.642 kb on - strand, within CCNA_00903at 983.680 kb on - strand, within CCNA_00903at 983.719 kb on - strand, within CCNA_00903at 983.734 kb on + strand, within CCNA_00903at 983.752 kb on - strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.894 kb on + strand, within CCNA_00903at 983.902 kb on + strand, within CCNA_00903at 983.939 kb on - strand, within CCNA_00903at 983.939 kb on - strand, within CCNA_00903at 983.949 kb on - strand, within CCNA_00903at 983.953 kb on + strand, within CCNA_00903at 983.965 kb on + strand, within CCNA_00903at 983.970 kb on + strand, within CCNA_00903at 983.970 kb on + strand, within CCNA_00903at 984.030 kb on - strand, within CCNA_00903at 984.031 kb on - strand, within CCNA_00903at 984.031 kb on - strand, within CCNA_00903at 984.038 kb on - strand, within CCNA_00903at 984.062 kb on - strand, within CCNA_00903at 984.080 kb on + strand, within CCNA_00903at 984.151 kb on - strand, within CCNA_00903at 984.154 kb on + strand, within CCNA_00903at 984.168 kb on + strand, within CCNA_00903at 984.211 kb on + strand, within CCNA_00903at 984.259 kb on - strand, within CCNA_00903at 984.321 kb on - strand, within CCNA_00903at 984.331 kb on - strandat 984.337 kb on - strandat 984.377 kb on - strandat 984.457 kb on + strandat 984.523 kb on + strandat 984.542 kb on + strandat 984.574 kb on - strandat 984.595 kb on + strand, within CCNA_00904at 984.628 kb on + strand, within CCNA_00904at 984.635 kb on + strand, within CCNA_00904at 984.656 kb on - strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.689 kb on + strand, within CCNA_00904at 984.691 kb on - strand, within CCNA_00904at 984.730 kb on - strand, within CCNA_00904at 984.761 kb on + strand, within CCNA_00904at 984.777 kb on - strand, within CCNA_00904at 984.817 kb on + strand, within CCNA_00904at 984.827 kb on + strand, within CCNA_00904at 984.827 kb on + strand, within CCNA_00904at 984.849 kb on - strand, within CCNA_00904at 984.850 kb on - strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.862 kb on - strand, within CCNA_00904at 984.865 kb on + strand, within CCNA_00904at 984.866 kb on + strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.927 kb on - strand, within CCNA_00904at 984.993 kb on - strand, within CCNA_00904at 984.998 kb on - strand, within CCNA_00904at 984.998 kb on - strand, within CCNA_00904at 985.012 kb on + strand, within CCNA_00904at 985.012 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.045 kb on + strand, within CCNA_00904at 985.067 kb on + strand, within CCNA_00904at 985.072 kb on + strand, within CCNA_00904at 985.072 kb on + strand, within CCNA_00904at 985.080 kb on - strand, within CCNA_00904at 985.080 kb on - strand, within CCNA_00904at 985.080 kb on - strand, within CCNA_00904at 985.085 kb on - strand, within CCNA_00904at 985.096 kb on + strand, within CCNA_00904at 985.096 kb on + strand, within CCNA_00904at 985.097 kb on + strand, within CCNA_00904at 985.104 kb on - strand, within CCNA_00904at 985.108 kb on + strand, within CCNA_00904at 985.117 kb on + strand, within CCNA_00904at 985.117 kb on + strand, within CCNA_00904at 985.125 kb on - strand, within CCNA_00904at 985.167 kb on + strand, within CCNA_00904at 985.209 kb on - strand, within CCNA_00904at 985.257 kb on + strand, within CCNA_00904at 985.257 kb on + strand, within CCNA_00904at 985.265 kb on - strand, within CCNA_00904at 985.379 kb on + strand, within CCNA_00904at 985.426 kb on + strandat 985.429 kb on - strandat 985.447 kb on - strandat 985.447 kb on - strandat 985.482 kb on - strandat 985.482 kb on - strandat 985.482 kb on - strandat 985.492 kb on + strandat 985.497 kb on + strandat 985.497 kb on + strandat 985.497 kb on + strandat 985.505 kb on - strandat 985.505 kb on - strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.507 kb on + strandat 985.513 kb on + strandat 985.513 kb on + strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.515 kb on - strandat 985.544 kb on + strandat 985.549 kb on + strandat 985.557 kb on - strandat 985.619 kb on - strand, within CCNA_00905at 985.673 kb on + strand, within CCNA_00905at 985.696 kb on - strand, within CCNA_00905at 985.737 kb on + strand, within CCNA_00905at 985.754 kb on - strand, within CCNA_00905at 985.780 kb on - strand, within CCNA_00905at 985.800 kb on + strand, within CCNA_00905at 985.806 kb on - strand, within CCNA_00905at 985.837 kb on - strand, within CCNA_00905at 985.854 kb on + strand, within CCNA_00905at 985.854 kb on + strand, within CCNA_00905at 985.854 kb on + strand, within CCNA_00905at 985.862 kb on - strand, within CCNA_00905at 985.881 kb on - strand, within CCNA_00905at 985.896 kb on + strand, within CCNA_00905at 985.899 kb on - strand, within CCNA_00905at 985.924 kb on - strand, within CCNA_00905at 985.938 kb on - strand, within CCNA_00905at 985.974 kb on - strand, within CCNA_00905at 985.979 kb on - strand, within CCNA_00905at 985.983 kb on + strand, within CCNA_00905at 986.001 kb on + strand, within CCNA_00905at 986.002 kb on - strand, within CCNA_00905at 986.024 kb on + strand, within CCNA_00905at 986.029 kb on + strand, within CCNA_00905at 986.029 kb on + strand, within CCNA_00905at 986.029 kb on + strand, within CCNA_00905at 986.034 kb on + strand, within CCNA_00905at 986.037 kb on - strand, within CCNA_00905at 986.037 kb on - strand, within CCNA_00905at 986.037 kb on - strand, within CCNA_00905at 986.044 kb on + strand, within CCNA_00905at 986.052 kb on - strand, within CCNA_00905at 986.121 kb on - strand, within CCNA_00905at 986.128 kb on + strand, within CCNA_00905at 986.136 kb on - strand, within CCNA_00905at 986.221 kb on + strand, within CCNA_00905at 986.229 kb on - strand, within CCNA_00905at 986.310 kb on - strandat 986.380 kb on - strandat 986.391 kb on + strandat 986.399 kb on - strandat 986.399 kb on - strandat 986.419 kb on + strandat 986.426 kb on + strandat 986.427 kb on - strandat 986.464 kb on + strandat 986.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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983,527 + CCNA_00903 0.38 -0.7
983,543 + CCNA_00903 0.39 -0.7
983,543 + CCNA_00903 0.39 +0.8
983,543 + CCNA_00903 0.39 +0.3
983,551 - CCNA_00903 0.40 -1.7
983,642 - CCNA_00903 0.45 -0.8
983,680 - CCNA_00903 0.48 -1.2
983,719 - CCNA_00903 0.50 +0.3
983,734 + CCNA_00903 0.51 -1.1
983,752 - CCNA_00903 0.53 +0.1
983,835 + CCNA_00903 0.58 -0.1
983,835 + CCNA_00903 0.58 -0.2
983,843 - CCNA_00903 0.58 +0.5
983,843 - CCNA_00903 0.58 -0.3
983,843 - CCNA_00903 0.58 +0.1
983,843 - CCNA_00903 0.58 -0.5
983,843 - CCNA_00903 0.58 +0.8
983,843 - CCNA_00903 0.58 +0.2
983,894 + CCNA_00903 0.62 -0.3
983,902 + CCNA_00903 0.62 -2.5
983,939 - CCNA_00903 0.65 -0.9
983,939 - CCNA_00903 0.65 -0.8
983,949 - CCNA_00903 0.65 +0.3
983,953 + CCNA_00903 0.66 -0.4
983,965 + CCNA_00903 0.66 -0.7
983,970 + CCNA_00903 0.67 +2.0
983,970 + CCNA_00903 0.67 -0.2
984,030 - CCNA_00903 0.71 +1.0
984,031 - CCNA_00903 0.71 +0.1
984,031 - CCNA_00903 0.71 -0.3
984,038 - CCNA_00903 0.71 -0.9
984,062 - CCNA_00903 0.73 +0.5
984,080 + CCNA_00903 0.74 +0.4
984,151 - CCNA_00903 0.78 +0.1
984,154 + CCNA_00903 0.79 -1.9
984,168 + CCNA_00903 0.79 +0.2
984,211 + CCNA_00903 0.82 +0.6
984,259 - CCNA_00903 0.85 +0.7
984,321 - CCNA_00903 0.89 +0.4
984,331 - +0.6
984,337 - -0.9
984,377 - -0.7
984,457 + -0.6
984,523 + +0.0
984,542 + -0.0
984,574 - +0.8
984,595 + CCNA_00904 0.11 +0.6
984,628 + CCNA_00904 0.15 -1.4
984,635 + CCNA_00904 0.15 -0.1
984,656 - CCNA_00904 0.17 +0.1
984,683 + CCNA_00904 0.20 +0.3
984,683 + CCNA_00904 0.20 -0.2
984,683 + CCNA_00904 0.20 -0.2
984,689 + CCNA_00904 0.21 -0.9
984,691 - CCNA_00904 0.21 -0.8
984,730 - CCNA_00904 0.25 -0.7
984,761 + CCNA_00904 0.28 -0.1
984,777 - CCNA_00904 0.30 -0.3
984,817 + CCNA_00904 0.34 +0.8
984,827 + CCNA_00904 0.35 +0.3
984,827 + CCNA_00904 0.35 -1.0
984,849 - CCNA_00904 0.37 -1.3
984,850 - CCNA_00904 0.37 -0.9
984,859 + CCNA_00904 0.38 +0.4
984,859 + CCNA_00904 0.38 -0.4
984,859 + CCNA_00904 0.38 +1.1
984,862 - CCNA_00904 0.38 -0.1
984,865 + CCNA_00904 0.38 -0.3
984,866 + CCNA_00904 0.38 -0.4
984,867 - CCNA_00904 0.39 +3.6
984,867 - CCNA_00904 0.39 -1.1
984,867 - CCNA_00904 0.39 -0.2
984,867 - CCNA_00904 0.39 +0.2
984,927 - CCNA_00904 0.45 +0.7
984,993 - CCNA_00904 0.51 +0.1
984,998 - CCNA_00904 0.52 -0.2
984,998 - CCNA_00904 0.52 -0.1
985,012 + CCNA_00904 0.53 -1.1
985,012 + CCNA_00904 0.53 +0.1
985,035 + CCNA_00904 0.55 +0.6
985,035 + CCNA_00904 0.55 -1.3
985,035 + CCNA_00904 0.55 -0.0
985,035 + CCNA_00904 0.55 +0.1
985,045 + CCNA_00904 0.56 +0.5
985,067 + CCNA_00904 0.59 +0.3
985,072 + CCNA_00904 0.59 -0.0
985,072 + CCNA_00904 0.59 -1.6
985,080 - CCNA_00904 0.60 -1.1
985,080 - CCNA_00904 0.60 -1.2
985,080 - CCNA_00904 0.60 -0.7
985,085 - CCNA_00904 0.60 +0.4
985,096 + CCNA_00904 0.61 -0.4
985,096 + CCNA_00904 0.61 -0.1
985,097 + CCNA_00904 0.62 -0.9
985,104 - CCNA_00904 0.62 +0.5
985,108 + CCNA_00904 0.63 -0.6
985,117 + CCNA_00904 0.64 +0.7
985,117 + CCNA_00904 0.64 -0.6
985,125 - CCNA_00904 0.64 -0.8
985,167 + CCNA_00904 0.69 +0.2
985,209 - CCNA_00904 0.73 -0.9
985,257 + CCNA_00904 0.78 +0.1
985,257 + CCNA_00904 0.78 +0.3
985,265 - CCNA_00904 0.78 -1.8
985,379 + CCNA_00904 0.90 +0.3
985,426 + +2.4
985,429 - +0.2
985,447 - -0.4
985,447 - -0.8
985,482 - -0.6
985,482 - -0.5
985,482 - -0.9
985,492 + +0.2
985,497 + +0.8
985,497 + -0.6
985,497 + +0.2
985,505 - -0.7
985,505 - +0.3
985,507 + +0.3
985,507 + -0.1
985,507 + +0.1
985,507 + +1.8
985,507 + +0.4
985,507 + -0.2
985,507 + +0.9
985,507 + +0.2
985,507 + +0.2
985,507 + +0.6
985,507 + -1.0
985,507 + -0.2
985,507 + +0.1
985,507 + -0.0
985,507 + +0.5
985,507 + +0.4
985,507 + +0.0
985,507 + +0.3
985,513 + +0.2
985,513 + -0.7
985,515 - +2.8
985,515 - -0.3
985,515 - +0.4
985,515 - +1.6
985,515 - -0.2
985,515 - +0.8
985,515 - +0.4
985,515 - -1.8
985,544 + -1.1
985,549 + +0.8
985,557 - -0.1
985,619 - CCNA_00905 0.12 +0.3
985,673 + CCNA_00905 0.18 -1.2
985,696 - CCNA_00905 0.21 -1.2
985,737 + CCNA_00905 0.26 -1.2
985,754 - CCNA_00905 0.28 +0.6
985,780 - CCNA_00905 0.31 -0.8
985,800 + CCNA_00905 0.33 +0.6
985,806 - CCNA_00905 0.33 +0.1
985,837 - CCNA_00905 0.37 -0.6
985,854 + CCNA_00905 0.39 +0.1
985,854 + CCNA_00905 0.39 -0.2
985,854 + CCNA_00905 0.39 +0.4
985,862 - CCNA_00905 0.40 -1.9
985,881 - CCNA_00905 0.42 -1.1
985,896 + CCNA_00905 0.44 -1.0
985,899 - CCNA_00905 0.44 +0.2
985,924 - CCNA_00905 0.47 -0.3
985,938 - CCNA_00905 0.48 -0.7
985,974 - CCNA_00905 0.52 -0.2
985,979 - CCNA_00905 0.53 -0.6
985,983 + CCNA_00905 0.53 -0.8
986,001 + CCNA_00905 0.55 -1.6
986,002 - CCNA_00905 0.56 -0.3
986,024 + CCNA_00905 0.58 +0.1
986,029 + CCNA_00905 0.59 -0.9
986,029 + CCNA_00905 0.59 -0.6
986,029 + CCNA_00905 0.59 -1.3
986,034 + CCNA_00905 0.59 -2.4
986,037 - CCNA_00905 0.59 +0.4
986,037 - CCNA_00905 0.59 -2.2
986,037 - CCNA_00905 0.59 -0.4
986,044 + CCNA_00905 0.60 +0.3
986,052 - CCNA_00905 0.61 -0.4
986,121 - CCNA_00905 0.69 -0.2
986,128 + CCNA_00905 0.70 -0.6
986,136 - CCNA_00905 0.71 -0.2
986,221 + CCNA_00905 0.80 -0.3
986,229 - CCNA_00905 0.81 +0.2
986,310 - +0.9
986,380 - +0.7
986,391 + +0.5
986,399 - -0.1
986,399 - -1.1
986,419 + +0.3
986,426 + +0.1
986,427 - +0.0
986,464 + -0.0
986,471 - -1.1

Or see this region's nucleotide sequence