Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00853

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00851 and CCNA_00852 are separated by 167 nucleotidesCCNA_00852 and CCNA_00853 overlap by 4 nucleotidesCCNA_00853 and CCNA_00854 are separated by 129 nucleotides CCNA_00851: CCNA_00851 - periplasmic multidrug efflux lipoprotein precursor, at 926,304 to 927,470 _00851 CCNA_00852: CCNA_00852 - TetR family transcriptional regulator, at 927,638 to 928,252 _00852 CCNA_00853: CCNA_00853 - 3-isopropylmalate dehydrogenase, at 928,249 to 929,016 _00853 CCNA_00854: CCNA_00854 - metallo-beta-lactamase protein, at 929,146 to 930,738 _00854 Position (kb) 928 929 930Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 927.263 kb on + strand, within CCNA_00851at 927.273 kb on - strand, within CCNA_00851at 927.287 kb on - strand, within CCNA_00851at 927.299 kb on + strand, within CCNA_00851at 927.301 kb on + strand, within CCNA_00851at 927.307 kb on - strand, within CCNA_00851at 927.309 kb on - strand, within CCNA_00851at 927.311 kb on + strand, within CCNA_00851at 927.319 kb on - strand, within CCNA_00851at 927.367 kb on + strandat 927.368 kb on - strandat 927.368 kb on - strandat 927.368 kb on - strandat 927.369 kb on - strandat 927.369 kb on - strandat 927.369 kb on - strandat 927.374 kb on - strandat 927.410 kb on + strandat 927.410 kb on - strandat 927.410 kb on - strandat 927.411 kb on + strandat 927.416 kb on + strandat 927.419 kb on - strandat 927.423 kb on + strandat 927.508 kb on + strandat 927.576 kb on + strandat 927.576 kb on - strandat 927.601 kb on - strandat 927.657 kb on + strandat 927.709 kb on + strand, within CCNA_00852at 927.854 kb on + strand, within CCNA_00852at 927.859 kb on + strand, within CCNA_00852at 927.965 kb on + strand, within CCNA_00852at 927.973 kb on - strand, within CCNA_00852at 928.064 kb on + strand, within CCNA_00852at 928.093 kb on + strand, within CCNA_00852at 928.140 kb on - strand, within CCNA_00852at 928.153 kb on + strand, within CCNA_00852at 928.155 kb on + strand, within CCNA_00852at 928.184 kb on - strand, within CCNA_00852at 928.184 kb on - strand, within CCNA_00852at 928.186 kb on + strand, within CCNA_00852at 928.256 kb on + strandat 928.256 kb on + strandat 928.264 kb on - strandat 928.266 kb on + strandat 928.266 kb on + strandat 928.274 kb on - strandat 928.287 kb on - strandat 928.291 kb on + strandat 928.291 kb on + strandat 928.294 kb on - strandat 928.294 kb on - strandat 928.329 kb on + strand, within CCNA_00853at 928.336 kb on + strand, within CCNA_00853at 928.337 kb on - strand, within CCNA_00853at 928.357 kb on + strand, within CCNA_00853at 928.362 kb on + strand, within CCNA_00853at 928.365 kb on - strand, within CCNA_00853at 928.403 kb on + strand, within CCNA_00853at 928.452 kb on + strand, within CCNA_00853at 928.460 kb on + strand, within CCNA_00853at 928.461 kb on - strand, within CCNA_00853at 928.511 kb on - strand, within CCNA_00853at 928.519 kb on - strand, within CCNA_00853at 928.585 kb on + strand, within CCNA_00853at 928.593 kb on - strand, within CCNA_00853at 928.598 kb on - strand, within CCNA_00853at 928.598 kb on - strand, within CCNA_00853at 928.602 kb on + strand, within CCNA_00853at 928.609 kb on + strand, within CCNA_00853at 928.614 kb on + strand, within CCNA_00853at 928.621 kb on - strand, within CCNA_00853at 928.622 kb on - strand, within CCNA_00853at 928.622 kb on - strand, within CCNA_00853at 928.622 kb on - strand, within CCNA_00853at 928.622 kb on - strand, within CCNA_00853at 928.647 kb on + strand, within CCNA_00853at 928.656 kb on - strand, within CCNA_00853at 928.678 kb on - strand, within CCNA_00853at 928.681 kb on + strand, within CCNA_00853at 928.689 kb on - strand, within CCNA_00853at 928.720 kb on - strand, within CCNA_00853at 928.727 kb on - strand, within CCNA_00853at 928.729 kb on + strand, within CCNA_00853at 928.770 kb on - strand, within CCNA_00853at 928.827 kb on + strand, within CCNA_00853at 928.827 kb on + strand, within CCNA_00853at 928.873 kb on + strand, within CCNA_00853at 928.900 kb on + strand, within CCNA_00853at 928.986 kb on + strandat 928.986 kb on + strandat 928.994 kb on + strandat 928.996 kb on + strandat 929.042 kb on + strandat 929.049 kb on + strandat 929.050 kb on - strandat 929.070 kb on + strandat 929.070 kb on + strandat 929.076 kb on + strandat 929.084 kb on - strandat 929.084 kb on - strandat 929.089 kb on - strandat 929.102 kb on + strandat 929.120 kb on + strandat 929.120 kb on + strandat 929.138 kb on + strandat 929.146 kb on - strandat 929.157 kb on - strandat 929.222 kb on + strandat 929.222 kb on + strandat 929.222 kb on + strandat 929.222 kb on + strandat 929.230 kb on - strandat 929.271 kb on - strandat 929.272 kb on + strandat 929.272 kb on - strandat 929.284 kb on - strandat 929.300 kb on + strandat 929.305 kb on + strandat 929.310 kb on + strand, within CCNA_00854at 929.313 kb on - strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.318 kb on - strand, within CCNA_00854at 929.331 kb on - strand, within CCNA_00854at 929.342 kb on - strand, within CCNA_00854at 929.389 kb on - strand, within CCNA_00854at 929.402 kb on - strand, within CCNA_00854at 929.413 kb on + strand, within CCNA_00854at 929.422 kb on - strand, within CCNA_00854at 929.478 kb on - strand, within CCNA_00854at 929.521 kb on - strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.523 kb on + strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.531 kb on - strand, within CCNA_00854at 929.543 kb on - strand, within CCNA_00854at 929.578 kb on - strand, within CCNA_00854at 929.590 kb on - strand, within CCNA_00854at 929.611 kb on + strand, within CCNA_00854at 929.618 kb on + strand, within CCNA_00854at 929.641 kb on - strand, within CCNA_00854at 929.658 kb on - strand, within CCNA_00854at 929.660 kb on + strand, within CCNA_00854at 929.682 kb on - strand, within CCNA_00854at 929.708 kb on - strand, within CCNA_00854at 929.719 kb on - strand, within CCNA_00854at 929.852 kb on - strand, within CCNA_00854at 929.887 kb on - strand, within CCNA_00854at 929.898 kb on - strand, within CCNA_00854at 929.905 kb on + strand, within CCNA_00854at 929.915 kb on + strand, within CCNA_00854at 929.936 kb on + strand, within CCNA_00854at 929.936 kb on + strand, within CCNA_00854at 929.953 kb on - strand, within CCNA_00854at 929.955 kb on + strand, within CCNA_00854at 929.955 kb on + strand, within CCNA_00854at 929.980 kb on + strand, within CCNA_00854at 930.016 kb on - strand, within CCNA_00854

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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927,263 + CCNA_00851 0.82 -1.1
927,273 - CCNA_00851 0.83 -2.4
927,287 - CCNA_00851 0.84 -0.2
927,299 + CCNA_00851 0.85 -3.3
927,301 + CCNA_00851 0.85 -1.0
927,307 - CCNA_00851 0.86 -1.0
927,309 - CCNA_00851 0.86 -0.8
927,311 + CCNA_00851 0.86 -1.1
927,319 - CCNA_00851 0.87 -0.6
927,367 + -1.7
927,368 - -0.8
927,368 - -1.5
927,368 - -0.5
927,369 - +0.4
927,369 - +0.5
927,369 - +1.2
927,374 - -2.3
927,410 + -2.3
927,410 - -0.8
927,410 - +0.3
927,411 + +0.2
927,416 + -1.4
927,419 - +0.5
927,423 + +0.4
927,508 + +0.4
927,576 + +0.4
927,576 - +0.7
927,601 - -0.2
927,657 + +1.2
927,709 + CCNA_00852 0.12 +0.6
927,854 + CCNA_00852 0.35 +0.2
927,859 + CCNA_00852 0.36 +0.3
927,965 + CCNA_00852 0.53 -0.1
927,973 - CCNA_00852 0.54 +0.7
928,064 + CCNA_00852 0.69 +1.0
928,093 + CCNA_00852 0.74 -0.8
928,140 - CCNA_00852 0.82 +2.3
928,153 + CCNA_00852 0.84 -0.3
928,155 + CCNA_00852 0.84 -0.0
928,184 - CCNA_00852 0.89 -0.7
928,184 - CCNA_00852 0.89 +0.2
928,186 + CCNA_00852 0.89 -0.5
928,256 + +0.7
928,256 + +0.2
928,264 - +0.1
928,266 + -1.6
928,266 + +0.2
928,274 - +0.1
928,287 - +0.2
928,291 + +0.1
928,291 + +0.4
928,294 - -0.2
928,294 - -0.4
928,329 + CCNA_00853 0.10 +0.2
928,336 + CCNA_00853 0.11 -1.4
928,337 - CCNA_00853 0.11 -0.6
928,357 + CCNA_00853 0.14 -0.6
928,362 + CCNA_00853 0.15 +1.3
928,365 - CCNA_00853 0.15 -0.5
928,403 + CCNA_00853 0.20 -0.3
928,452 + CCNA_00853 0.26 -0.5
928,460 + CCNA_00853 0.27 -0.7
928,461 - CCNA_00853 0.28 -0.4
928,511 - CCNA_00853 0.34 -0.3
928,519 - CCNA_00853 0.35 -1.4
928,585 + CCNA_00853 0.44 -0.7
928,593 - CCNA_00853 0.45 -0.0
928,598 - CCNA_00853 0.45 -1.0
928,598 - CCNA_00853 0.45 -2.3
928,602 + CCNA_00853 0.46 -0.6
928,609 + CCNA_00853 0.47 -0.8
928,614 + CCNA_00853 0.48 -1.0
928,621 - CCNA_00853 0.48 +0.0
928,622 - CCNA_00853 0.49 -0.4
928,622 - CCNA_00853 0.49 -1.9
928,622 - CCNA_00853 0.49 -0.9
928,622 - CCNA_00853 0.49 -0.5
928,647 + CCNA_00853 0.52 -0.1
928,656 - CCNA_00853 0.53 -0.5
928,678 - CCNA_00853 0.56 +0.2
928,681 + CCNA_00853 0.56 -1.6
928,689 - CCNA_00853 0.57 -0.9
928,720 - CCNA_00853 0.61 -1.6
928,727 - CCNA_00853 0.62 -1.0
928,729 + CCNA_00853 0.62 +0.1
928,770 - CCNA_00853 0.68 -1.6
928,827 + CCNA_00853 0.75 -2.3
928,827 + CCNA_00853 0.75 +2.0
928,873 + CCNA_00853 0.81 -2.0
928,900 + CCNA_00853 0.85 +0.4
928,986 + -0.2
928,986 + +0.2
928,994 + -0.7
928,996 + -0.2
929,042 + -0.1
929,049 + -0.4
929,050 - -0.4
929,070 + -1.1
929,070 + +0.7
929,076 + +0.7
929,084 - +0.4
929,084 - +1.2
929,089 - +0.7
929,102 + -1.3
929,120 + -1.1
929,120 + +0.2
929,138 + -0.4
929,146 - +0.4
929,157 - -0.1
929,222 + -0.4
929,222 + -1.3
929,222 + -0.8
929,222 + -0.1
929,230 - -0.8
929,271 - -0.9
929,272 + +0.2
929,272 - -0.5
929,284 - +0.3
929,300 + -1.3
929,305 + +0.2
929,310 + CCNA_00854 0.10 +0.2
929,313 - CCNA_00854 0.10 -0.9
929,318 - CCNA_00854 0.11 +0.2
929,318 - CCNA_00854 0.11 +0.3
929,318 - CCNA_00854 0.11 -0.5
929,331 - CCNA_00854 0.12 +1.4
929,342 - CCNA_00854 0.12 -0.9
929,389 - CCNA_00854 0.15 -0.1
929,402 - CCNA_00854 0.16 -0.2
929,413 + CCNA_00854 0.17 -0.3
929,422 - CCNA_00854 0.17 +0.1
929,478 - CCNA_00854 0.21 -0.4
929,521 - CCNA_00854 0.24 -0.4
929,523 + CCNA_00854 0.24 +0.5
929,523 + CCNA_00854 0.24 -1.1
929,523 + CCNA_00854 0.24 -0.3
929,523 + CCNA_00854 0.24 +0.3
929,523 + CCNA_00854 0.24 -0.8
929,531 - CCNA_00854 0.24 -0.1
929,531 - CCNA_00854 0.24 -0.9
929,531 - CCNA_00854 0.24 +0.1
929,543 - CCNA_00854 0.25 -0.9
929,578 - CCNA_00854 0.27 -0.7
929,590 - CCNA_00854 0.28 -2.2
929,611 + CCNA_00854 0.29 +0.4
929,618 + CCNA_00854 0.30 +0.1
929,641 - CCNA_00854 0.31 -1.3
929,658 - CCNA_00854 0.32 +0.6
929,660 + CCNA_00854 0.32 +0.3
929,682 - CCNA_00854 0.34 +0.2
929,708 - CCNA_00854 0.35 -1.2
929,719 - CCNA_00854 0.36 -0.3
929,852 - CCNA_00854 0.44 -0.9
929,887 - CCNA_00854 0.47 +0.6
929,898 - CCNA_00854 0.47 -0.5
929,905 + CCNA_00854 0.48 +0.0
929,915 + CCNA_00854 0.48 +1.1
929,936 + CCNA_00854 0.50 +0.1
929,936 + CCNA_00854 0.50 -0.8
929,953 - CCNA_00854 0.51 +0.0
929,955 + CCNA_00854 0.51 +0.4
929,955 + CCNA_00854 0.51 -0.2
929,980 + CCNA_00854 0.52 -0.1
930,016 - CCNA_00854 0.55 +0.0

Or see this region's nucleotide sequence