Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00790 and CCNA_03939 are separated by 318 nucleotides CCNA_03939 and CCNA_00792 are separated by 340 nucleotides CCNA_00792 and CCNA_00793 are separated by 88 nucleotides
CCNA_00790: CCNA_00790 - hypoxia negative feedback regulator FixT, at 853,699 to 854,076
_00790
CCNA_03939: CCNA_03939 - hypothetical protein, at 854,395 to 854,685
_03939
CCNA_00792: CCNA_00792 - glycosyltransferase, at 855,026 to 856,210
_00792
CCNA_00793: CCNA_00793 - phosphatidylglycerol glycosyltransferase, at 856,299 to 857,666
_00793
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 854.038 kb on - strand, within CCNA_00790 at 854.078 kb on - strand at 854.078 kb on - strand at 854.245 kb on - strand at 854.270 kb on - strand at 854.270 kb on - strand at 854.305 kb on - strand at 854.314 kb on + strand at 854.326 kb on + strand at 854.326 kb on + strand at 854.331 kb on + strand at 854.331 kb on + strand at 854.333 kb on + strand at 854.334 kb on - strand at 854.334 kb on - strand at 854.334 kb on - strand at 854.344 kb on + strand at 854.344 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.349 kb on + strand at 854.357 kb on - strand at 854.362 kb on - strand at 854.383 kb on - strand at 854.389 kb on - strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.405 kb on + strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.413 kb on - strand at 854.429 kb on + strand, within CCNA_03939 at 854.429 kb on + strand, within CCNA_03939 at 854.437 kb on - strand, within CCNA_03939 at 854.439 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.499 kb on + strand, within CCNA_03939 at 854.504 kb on + strand, within CCNA_03939 at 854.504 kb on + strand, within CCNA_03939 at 854.511 kb on + strand, within CCNA_03939 at 854.517 kb on - strand, within CCNA_03939 at 854.519 kb on - strand, within CCNA_03939 at 854.536 kb on + strand, within CCNA_03939 at 854.538 kb on - strand, within CCNA_03939 at 854.686 kb on + strand at 854.706 kb on + strand at 854.747 kb on + strand at 854.768 kb on + strand at 854.776 kb on - strand at 854.796 kb on + strand at 854.818 kb on - strand at 854.820 kb on - strand at 854.823 kb on - strand at 854.844 kb on - strand at 854.867 kb on + strand at 854.875 kb on - strand at 854.892 kb on + strand at 854.948 kb on + strand at 854.977 kb on + strand at 855.012 kb on - strand at 855.023 kb on + strand at 855.033 kb on - strand at 855.067 kb on - strand at 855.067 kb on - strand at 855.144 kb on + strand at 855.154 kb on + strand, within CCNA_00792 at 855.162 kb on - strand, within CCNA_00792 at 855.162 kb on - strand, within CCNA_00792 at 855.162 kb on - strand, within CCNA_00792 at 855.178 kb on + strand, within CCNA_00792 at 855.250 kb on - strand, within CCNA_00792 at 855.250 kb on - strand, within CCNA_00792 at 855.275 kb on + strand, within CCNA_00792 at 855.276 kb on + strand, within CCNA_00792 at 855.278 kb on - strand, within CCNA_00792 at 855.278 kb on - strand, within CCNA_00792 at 855.278 kb on - strand, within CCNA_00792 at 855.293 kb on + strand, within CCNA_00792 at 855.293 kb on + strand, within CCNA_00792 at 855.301 kb on - strand, within CCNA_00792 at 855.324 kb on - strand, within CCNA_00792 at 855.347 kb on + strand, within CCNA_00792 at 855.360 kb on - strand, within CCNA_00792 at 855.362 kb on + strand, within CCNA_00792 at 855.365 kb on - strand, within CCNA_00792 at 855.370 kb on - strand, within CCNA_00792 at 855.407 kb on - strand, within CCNA_00792 at 855.475 kb on + strand, within CCNA_00792 at 855.475 kb on + strand, within CCNA_00792 at 855.483 kb on - strand, within CCNA_00792 at 855.495 kb on + strand, within CCNA_00792 at 855.495 kb on + strand, within CCNA_00792 at 855.495 kb on + strand, within CCNA_00792 at 855.505 kb on + strand, within CCNA_00792 at 855.513 kb on - strand, within CCNA_00792 at 855.572 kb on - strand, within CCNA_00792 at 855.603 kb on + strand, within CCNA_00792 at 855.630 kb on - strand, within CCNA_00792 at 855.658 kb on + strand, within CCNA_00792 at 855.665 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.689 kb on + strand, within CCNA_00792 at 855.695 kb on - strand, within CCNA_00792 at 855.697 kb on - strand, within CCNA_00792 at 855.697 kb on - strand, within CCNA_00792 at 855.697 kb on - strand, within CCNA_00792 at 855.703 kb on + strand, within CCNA_00792 at 855.721 kb on + strand, within CCNA_00792 at 855.774 kb on - strand, within CCNA_00792 at 855.777 kb on + strand, within CCNA_00792 at 855.790 kb on - strand, within CCNA_00792 at 855.813 kb on + strand, within CCNA_00792 at 855.816 kb on - strand, within CCNA_00792 at 855.828 kb on - strand, within CCNA_00792 at 855.839 kb on - strand, within CCNA_00792 at 855.877 kb on - strand, within CCNA_00792 at 855.914 kb on - strand, within CCNA_00792 at 855.939 kb on + strand, within CCNA_00792 at 855.939 kb on + strand, within CCNA_00792 at 855.982 kb on - strand, within CCNA_00792 at 856.002 kb on + strand, within CCNA_00792 at 856.106 kb on - strand at 856.114 kb on - strand at 856.157 kb on - strand at 856.183 kb on - strand at 856.187 kb on - strand at 856.221 kb on + strand at 856.265 kb on - strand at 856.277 kb on - strand at 856.305 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.312 kb on + strand at 856.313 kb on - strand at 856.313 kb on - strand at 856.313 kb on - strand at 856.313 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.320 kb on - strand at 856.354 kb on + strand at 856.354 kb on + strand at 856.359 kb on + strand at 856.359 kb on + strand at 856.362 kb on - strand at 856.362 kb on - strand at 856.367 kb on - strand at 856.407 kb on + strand at 856.453 kb on - strand, within CCNA_00793 at 856.453 kb on - strand, within CCNA_00793 at 856.488 kb on + strand, within CCNA_00793 at 856.506 kb on - strand, within CCNA_00793 at 856.535 kb on + strand, within CCNA_00793 at 856.536 kb on + strand, within CCNA_00793 at 856.556 kb on - strand, within CCNA_00793 at 856.559 kb on + strand, within CCNA_00793 at 856.636 kb on - strand, within CCNA_00793 at 856.641 kb on + strand, within CCNA_00793 at 856.649 kb on - strand, within CCNA_00793 at 856.674 kb on + strand, within CCNA_00793 at 856.704 kb on - strand, within CCNA_00793 at 856.810 kb on + strand, within CCNA_00793 at 856.810 kb on + strand, within CCNA_00793 at 856.818 kb on - strand, within CCNA_00793 at 856.823 kb on - strand, within CCNA_00793 at 856.849 kb on + strand, within CCNA_00793 at 856.870 kb on + strand, within CCNA_00793 at 856.887 kb on + strand, within CCNA_00793 at 856.906 kb on + strand, within CCNA_00793 at 856.906 kb on + strand, within CCNA_00793 at 856.914 kb on - strand, within CCNA_00793 at 856.921 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.940 kb on + strand, within CCNA_00793 at 856.941 kb on + strand, within CCNA_00793 at 856.941 kb on + strand, within CCNA_00793 at 856.948 kb on - strand, within CCNA_00793 at 856.948 kb on - strand, within CCNA_00793 at 856.949 kb on - strand, within CCNA_00793 at 856.949 kb on - strand, within CCNA_00793 at 856.971 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.976 kb on + strand, within CCNA_00793 at 856.984 kb on - strand, within CCNA_00793 at 856.984 kb on - strand, within CCNA_00793 at 856.984 kb on - strand, within CCNA_00793 at 856.996 kb on + strand, within CCNA_00793 at 857.013 kb on + strand, within CCNA_00793 at 857.021 kb on - strand, within CCNA_00793 at 857.059 kb on - strand, within CCNA_00793
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 854,038 - CCNA_00790 0.90 -0.4 854,078 - +0.1 854,078 - -0.5 854,245 - -1.0 854,270 - -0.2 854,270 - -0.6 854,305 - +0.8 854,314 + -0.6 854,326 + -0.5 854,326 + -0.4 854,331 + +0.3 854,331 + +0.4 854,333 + -1.0 854,334 - +0.7 854,334 - -0.6 854,334 - -0.3 854,344 + -1.0 854,344 + -0.1 854,349 + -0.4 854,349 + -0.2 854,349 + -1.1 854,349 + -1.8 854,349 + -0.2 854,357 - -0.1 854,362 - +0.5 854,383 - -0.7 854,389 - -0.4 854,405 + +0.6 854,405 + -0.5 854,405 + +0.5 854,405 + +0.4 854,405 + +0.1 854,405 + -0.9 854,405 + -1.0 854,413 - +0.5 854,413 - -0.5 854,413 - +0.4 854,413 - +1.3 854,429 + CCNA_03939 0.12 -0.3 854,429 + CCNA_03939 0.12 +0.3 854,437 - CCNA_03939 0.14 +0.5 854,439 + CCNA_03939 0.15 -0.2 854,499 + CCNA_03939 0.36 +0.7 854,499 + CCNA_03939 0.36 -1.1 854,499 + CCNA_03939 0.36 +0.6 854,504 + CCNA_03939 0.37 -0.4 854,504 + CCNA_03939 0.37 -0.7 854,511 + CCNA_03939 0.40 -0.7 854,517 - CCNA_03939 0.42 -0.3 854,519 - CCNA_03939 0.43 -1.5 854,536 + CCNA_03939 0.48 -0.2 854,538 - CCNA_03939 0.49 -0.1 854,686 + -0.3 854,706 + +0.3 854,747 + -0.8 854,768 + -0.9 854,776 - -1.1 854,796 + +0.7 854,818 - -0.5 854,820 - -0.2 854,823 - -0.1 854,844 - +2.2 854,867 + -0.3 854,875 - -1.9 854,892 + -0.7 854,948 + -0.2 854,977 + +0.2 855,012 - +0.5 855,023 + -0.1 855,033 - -0.2 855,067 - -1.2 855,067 - +1.2 855,144 + +0.7 855,154 + CCNA_00792 0.11 +0.9 855,162 - CCNA_00792 0.11 +1.8 855,162 - CCNA_00792 0.11 -1.3 855,162 - CCNA_00792 0.11 -1.4 855,178 + CCNA_00792 0.13 +1.6 855,250 - CCNA_00792 0.19 -1.5 855,250 - CCNA_00792 0.19 +0.0 855,275 + CCNA_00792 0.21 -0.2 855,276 + CCNA_00792 0.21 +0.0 855,278 - CCNA_00792 0.21 -1.0 855,278 - CCNA_00792 0.21 +0.4 855,278 - CCNA_00792 0.21 -0.8 855,293 + CCNA_00792 0.23 -1.6 855,293 + CCNA_00792 0.23 +0.2 855,301 - CCNA_00792 0.23 -0.2 855,324 - CCNA_00792 0.25 +0.4 855,347 + CCNA_00792 0.27 -3.3 855,360 - CCNA_00792 0.28 -0.3 855,362 + CCNA_00792 0.28 +0.8 855,365 - CCNA_00792 0.29 -1.5 855,370 - CCNA_00792 0.29 +0.4 855,407 - CCNA_00792 0.32 +0.6 855,475 + CCNA_00792 0.38 -1.9 855,475 + CCNA_00792 0.38 -0.0 855,483 - CCNA_00792 0.39 +0.1 855,495 + CCNA_00792 0.40 -0.5 855,495 + CCNA_00792 0.40 +0.3 855,495 + CCNA_00792 0.40 +1.5 855,505 + CCNA_00792 0.40 -0.2 855,513 - CCNA_00792 0.41 -0.2 855,572 - CCNA_00792 0.46 -0.1 855,603 + CCNA_00792 0.49 -0.7 855,630 - CCNA_00792 0.51 +0.2 855,658 + CCNA_00792 0.53 -0.4 855,665 + CCNA_00792 0.54 +0.8 855,689 + CCNA_00792 0.56 +0.5 855,689 + CCNA_00792 0.56 -0.4 855,689 + CCNA_00792 0.56 +1.1 855,689 + CCNA_00792 0.56 +0.4 855,695 - CCNA_00792 0.56 +0.6 855,697 - CCNA_00792 0.57 +0.5 855,697 - CCNA_00792 0.57 +0.7 855,697 - CCNA_00792 0.57 +0.1 855,703 + CCNA_00792 0.57 -0.0 855,721 + CCNA_00792 0.59 +0.1 855,774 - CCNA_00792 0.63 +0.0 855,777 + CCNA_00792 0.63 -0.5 855,790 - CCNA_00792 0.64 +0.1 855,813 + CCNA_00792 0.66 -1.1 855,816 - CCNA_00792 0.67 +0.6 855,828 - CCNA_00792 0.68 -0.5 855,839 - CCNA_00792 0.69 +0.1 855,877 - CCNA_00792 0.72 -0.4 855,914 - CCNA_00792 0.75 -0.2 855,939 + CCNA_00792 0.77 -0.7 855,939 + CCNA_00792 0.77 -1.0 855,982 - CCNA_00792 0.81 -0.3 856,002 + CCNA_00792 0.82 -0.2 856,106 - -0.6 856,114 - +0.0 856,157 - -0.4 856,183 - +0.6 856,187 - -0.0 856,221 + -1.0 856,265 - +0.2 856,277 - +0.2 856,305 + +0.4 856,312 + -0.1 856,312 + -0.1 856,312 + -0.4 856,312 + -0.8 856,312 + +0.2 856,312 + -0.9 856,312 + +0.4 856,313 - -2.8 856,313 - -0.8 856,313 - -0.3 856,313 - +0.0 856,320 - +0.3 856,320 - +0.1 856,320 - -0.2 856,320 - +0.7 856,320 - +0.9 856,320 - -0.6 856,354 + +1.3 856,354 + +0.1 856,359 + -0.8 856,359 + -0.7 856,362 - +0.3 856,362 - +2.1 856,367 - -0.2 856,407 + +0.2 856,453 - CCNA_00793 0.11 -0.6 856,453 - CCNA_00793 0.11 +0.1 856,488 + CCNA_00793 0.14 -1.2 856,506 - CCNA_00793 0.15 -1.4 856,535 + CCNA_00793 0.17 +0.3 856,536 + CCNA_00793 0.17 -1.1 856,556 - CCNA_00793 0.19 +0.6 856,559 + CCNA_00793 0.19 +0.1 856,636 - CCNA_00793 0.25 -0.0 856,641 + CCNA_00793 0.25 -1.2 856,649 - CCNA_00793 0.26 -0.5 856,674 + CCNA_00793 0.27 -0.6 856,704 - CCNA_00793 0.30 +0.3 856,810 + CCNA_00793 0.37 +0.2 856,810 + CCNA_00793 0.37 +0.7 856,818 - CCNA_00793 0.38 +0.2 856,823 - CCNA_00793 0.38 +0.6 856,849 + CCNA_00793 0.40 +1.2 856,870 + CCNA_00793 0.42 +0.8 856,887 + CCNA_00793 0.43 +1.1 856,906 + CCNA_00793 0.44 +0.8 856,906 + CCNA_00793 0.44 +0.2 856,914 - CCNA_00793 0.45 -0.3 856,921 + CCNA_00793 0.45 -0.6 856,940 + CCNA_00793 0.47 -0.8 856,940 + CCNA_00793 0.47 +0.2 856,940 + CCNA_00793 0.47 -1.3 856,940 + CCNA_00793 0.47 +0.1 856,940 + CCNA_00793 0.47 -0.7 856,940 + CCNA_00793 0.47 +0.5 856,941 + CCNA_00793 0.47 +2.2 856,941 + CCNA_00793 0.47 +0.1 856,948 - CCNA_00793 0.47 -0.5 856,948 - CCNA_00793 0.47 +0.8 856,949 - CCNA_00793 0.48 -1.8 856,949 - CCNA_00793 0.48 +0.3 856,971 + CCNA_00793 0.49 -0.2 856,976 + CCNA_00793 0.49 +0.6 856,976 + CCNA_00793 0.49 +0.8 856,976 + CCNA_00793 0.49 -0.5 856,976 + CCNA_00793 0.49 +0.2 856,984 - CCNA_00793 0.50 -1.2 856,984 - CCNA_00793 0.50 -0.4 856,984 - CCNA_00793 0.50 +0.1 856,996 + CCNA_00793 0.51 -0.3 857,013 + CCNA_00793 0.52 +0.2 857,021 - CCNA_00793 0.53 +0.1 857,059 - CCNA_00793 0.56 -0.8
Or see this region's nucleotide sequence