Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00676 and CCNA_00677 are separated by 147 nucleotides CCNA_00677 and CCNA_00678 are separated by 4 nucleotides CCNA_00678 and CCNA_00679 are separated by 536 nucleotides
CCNA_00676: CCNA_00676 - PSK-family transcription factor, at 733,495 to 733,734
_00676
CCNA_00677: CCNA_00677 - LSU ribosomal protein L1P, at 733,882 to 734,571
_00677
CCNA_00678: CCNA_00678 - LSU ribosomal protein L11P, at 734,576 to 735,007
_00678
CCNA_00679: CCNA_00679 - transposase, IS116/IS110/IS902 family, at 735,544 to 736,479
_00679
Position (kb) 734
735
736 Strain fitness (log2 ratio) -1
0
1
2
3 at 733.585 kb on - strand, within CCNA_00676 at 733.607 kb on + strand, within CCNA_00676 at 733.607 kb on + strand, within CCNA_00676 at 733.607 kb on + strand, within CCNA_00676 at 733.615 kb on - strand, within CCNA_00676 at 733.615 kb on - strand, within CCNA_00676 at 733.615 kb on - strand, within CCNA_00676 at 733.627 kb on + strand, within CCNA_00676 at 733.777 kb on + strand at 733.788 kb on + strand at 733.820 kb on + strand at 733.893 kb on - strand at 733.915 kb on - strand at 735.162 kb on - strand at 735.173 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.188 kb on + strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.196 kb on - strand at 735.198 kb on - strand at 735.229 kb on + strand at 735.255 kb on + strand at 735.266 kb on - strand at 735.283 kb on + strand at 735.283 kb on + strand at 735.288 kb on + strand at 735.291 kb on - strand at 735.291 kb on - strand at 735.291 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 733,585 - CCNA_00676 0.38 +0.2 733,607 + CCNA_00676 0.47 -0.8 733,607 + CCNA_00676 0.47 +0.1 733,607 + CCNA_00676 0.47 +0.1 733,615 - CCNA_00676 0.50 +0.3 733,615 - CCNA_00676 0.50 +0.9 733,615 - CCNA_00676 0.50 +0.5 733,627 + CCNA_00676 0.55 +0.0 733,777 + +0.0 733,788 + -0.2 733,820 + +0.0 733,893 - -1.2 733,915 - +0.3 735,162 - +1.6 735,173 + -1.1 735,188 + -0.9 735,188 + +0.6 735,188 + +1.5 735,188 + -0.5 735,188 + -0.2 735,188 + +1.6 735,188 + +2.8 735,188 + -0.1 735,188 + +0.2 735,188 + -0.1 735,196 - -0.1 735,196 - +0.8 735,196 - +0.1 735,196 - +0.1 735,196 - -0.1 735,196 - +1.1 735,196 - -0.6 735,196 - +0.8 735,198 - +0.2 735,229 + -0.6 735,255 + +0.1 735,266 - -0.3 735,283 + -0.7 735,283 + +2.0 735,288 + +0.5 735,291 - +0.6 735,291 - +0.7 735,291 - -0.3
Or see this region's nucleotide sequence