Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00571 and CCNA_00572 overlap by 4 nucleotides CCNA_00572 and CCNA_00573 are separated by 315 nucleotides
CCNA_00571: CCNA_00571 - phosphoenolpyruvate-protein phosphotransferase/phosphocarrier protein HPr/PTS system, glucose-specific IIA subunit, at 589,132 to 591,768
_00571
CCNA_00572: CCNA_00572 - PTS system, N-acetylglucosamine-specific IIBC component, at 591,765 to 593,513
_00572
CCNA_00573: CCNA_00573 - TonB-dependent receptor, at 593,829 to 596,600
_00573
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -2
-1
0
1
2 at 592.578 kb on + strand, within CCNA_00572 at 592.580 kb on + strand, within CCNA_00572 at 592.771 kb on - strand, within CCNA_00572 at 593.349 kb on + strand at 593.406 kb on + strand at 593.416 kb on + strand at 593.431 kb on + strand at 593.439 kb on - strand at 593.439 kb on - strand at 593.465 kb on - strand at 593.475 kb on - strand at 593.499 kb on - strand at 593.501 kb on + strand at 593.509 kb on - strand at 593.517 kb on - strand at 593.543 kb on + strand at 593.543 kb on + strand at 593.543 kb on + strand at 593.543 kb on + strand at 593.543 kb on + strand at 593.543 kb on + strand at 593.543 kb on + strand at 593.551 kb on - strand at 593.566 kb on + strand at 593.574 kb on - strand at 593.587 kb on - strand at 593.815 kb on - strand at 593.934 kb on + strand at 593.942 kb on - strand at 593.990 kb on - strand at 593.990 kb on - strand at 593.992 kb on - strand at 593.992 kb on - strand at 594.006 kb on - strand at 594.031 kb on - strand at 594.045 kb on + strand at 594.092 kb on - strand at 594.175 kb on - strand, within CCNA_00573 at 594.221 kb on - strand, within CCNA_00573 at 594.226 kb on - strand, within CCNA_00573 at 594.249 kb on - strand, within CCNA_00573 at 594.273 kb on + strand, within CCNA_00573 at 594.279 kb on + strand, within CCNA_00573 at 594.279 kb on + strand, within CCNA_00573 at 594.279 kb on + strand, within CCNA_00573 at 594.279 kb on + strand, within CCNA_00573 at 594.279 kb on + strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.287 kb on - strand, within CCNA_00573 at 594.297 kb on + strand, within CCNA_00573 at 594.303 kb on + strand, within CCNA_00573 at 594.303 kb on + strand, within CCNA_00573 at 594.303 kb on + strand, within CCNA_00573 at 594.311 kb on - strand, within CCNA_00573 at 594.311 kb on - strand, within CCNA_00573 at 594.311 kb on - strand, within CCNA_00573 at 594.321 kb on - strand, within CCNA_00573 at 594.351 kb on - strand, within CCNA_00573 at 594.377 kb on + strand, within CCNA_00573 at 594.442 kb on + strand, within CCNA_00573 at 594.442 kb on - strand, within CCNA_00573 at 594.442 kb on - strand, within CCNA_00573 at 594.450 kb on - strand, within CCNA_00573 at 594.450 kb on - strand, within CCNA_00573
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 592,578 + CCNA_00572 0.46 -0.5 592,580 + CCNA_00572 0.47 -0.6 592,771 - CCNA_00572 0.58 -0.5 593,349 + +1.1 593,406 + -1.0 593,416 + +1.3 593,431 + -0.7 593,439 - -1.1 593,439 - -1.1 593,465 - +0.5 593,475 - -0.9 593,499 - +0.5 593,501 + -1.0 593,509 - -1.1 593,517 - -0.4 593,543 + -1.2 593,543 + -0.5 593,543 + -2.1 593,543 + -1.1 593,543 + -0.8 593,543 + +0.1 593,543 + +1.5 593,551 - +1.3 593,566 + -1.6 593,574 - -1.3 593,587 - -1.0 593,815 - -1.7 593,934 + -0.9 593,942 - +0.7 593,990 - -0.7 593,990 - +1.0 593,992 - -0.8 593,992 - +0.1 594,006 - -1.0 594,031 - -1.0 594,045 + -1.7 594,092 - +0.5 594,175 - CCNA_00573 0.12 +0.1 594,221 - CCNA_00573 0.14 -0.3 594,226 - CCNA_00573 0.14 +0.2 594,249 - CCNA_00573 0.15 +0.0 594,273 + CCNA_00573 0.16 +0.3 594,279 + CCNA_00573 0.16 -0.7 594,279 + CCNA_00573 0.16 -1.0 594,279 + CCNA_00573 0.16 -0.4 594,279 + CCNA_00573 0.16 -0.3 594,279 + CCNA_00573 0.16 -0.8 594,287 - CCNA_00573 0.17 -0.5 594,287 - CCNA_00573 0.17 -0.4 594,297 + CCNA_00573 0.17 -1.4 594,303 + CCNA_00573 0.17 +0.8 594,303 + CCNA_00573 0.17 +0.8 594,303 + CCNA_00573 0.17 +0.1 594,311 - CCNA_00573 0.17 -0.2 594,311 - CCNA_00573 0.17 -1.2 594,311 - CCNA_00573 0.17 +1.8 594,321 - CCNA_00573 0.18 +0.3 594,351 - CCNA_00573 0.19 -0.4 594,377 + CCNA_00573 0.20 -1.8 594,442 + CCNA_00573 0.22 +0.4 594,442 - CCNA_00573 0.22 -0.1 594,442 - CCNA_00573 0.22 +0.5 594,450 - CCNA_00573 0.22 +1.0 594,450 - CCNA_00573 0.22 -0.0
Or see this region's nucleotide sequence