Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00464 and CCNA_00465 are separated by 242 nucleotides CCNA_00465 and CCNA_00466 are separated by 157 nucleotides
CCNA_00464: CCNA_00464 - Undecaprenyl-phosphate sugar phosphotransferase-related protein, at 477,514 to 477,678
_00464
CCNA_00465: CCNA_00465 - UDP-galactopyranose mutase, at 477,921 to 479,033
_00465
CCNA_00466: CCNA_00466 - glycosyltransferase, at 479,191 to 480,435
_00466
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 477.212 kb on + strand at 477.212 kb on + strand at 477.219 kb on + strand at 477.220 kb on + strand at 477.246 kb on + strand at 477.258 kb on - strand at 477.264 kb on - strand at 477.289 kb on + strand at 477.297 kb on - strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.304 kb on + strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.312 kb on - strand at 477.330 kb on - strand at 477.370 kb on - strand at 477.382 kb on + strand at 477.388 kb on - strand at 477.390 kb on - strand at 477.458 kb on + strand at 477.469 kb on + strand at 477.474 kb on + strand at 477.477 kb on - strand at 477.487 kb on - strand at 477.488 kb on - strand at 477.495 kb on + strand at 477.503 kb on - strand at 477.504 kb on + strand at 477.514 kb on - strand at 477.550 kb on + strand, within CCNA_00464 at 477.551 kb on + strand, within CCNA_00464 at 477.556 kb on + strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.558 kb on - strand, within CCNA_00464 at 477.564 kb on - strand, within CCNA_00464 at 477.574 kb on - strand, within CCNA_00464 at 477.576 kb on + strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.584 kb on - strand, within CCNA_00464 at 477.619 kb on + strand, within CCNA_00464 at 477.632 kb on - strand, within CCNA_00464 at 477.673 kb on - strand at 477.684 kb on + strand at 477.684 kb on + strand at 477.692 kb on - strand at 477.729 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.827 kb on + strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.835 kb on - strand at 477.845 kb on - strand at 477.848 kb on + strand at 477.850 kb on + strand at 477.850 kb on + strand at 477.858 kb on - strand at 477.860 kb on + strand at 477.868 kb on - strand at 477.895 kb on + strand at 477.901 kb on + strand at 477.903 kb on - strand at 477.903 kb on - strand at 477.903 kb on - strand at 479.009 kb on + strand at 479.009 kb on + strand at 479.009 kb on + strand at 479.017 kb on - strand at 479.026 kb on - strand at 479.106 kb on + strand at 479.178 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 477,212 + +0.3 477,212 + +0.2 477,219 + -0.7 477,220 + -0.0 477,246 + +0.6 477,258 - -1.0 477,264 - -0.3 477,289 + -1.2 477,297 - +0.3 477,304 + +0.0 477,304 + -0.1 477,304 + +0.2 477,304 + -0.5 477,304 + +0.7 477,304 + +0.4 477,304 + +1.4 477,304 + -1.0 477,312 - -1.7 477,312 - -0.1 477,312 - -0.1 477,312 - -0.2 477,330 - -2.3 477,370 - +0.2 477,382 + +2.2 477,388 - -0.5 477,390 - -1.5 477,458 + +0.0 477,469 + +0.7 477,474 + +0.2 477,477 - -1.1 477,487 - -1.3 477,488 - +1.0 477,495 + +0.1 477,503 - -2.0 477,504 + +0.8 477,514 - +0.4 477,550 + CCNA_00464 0.22 +0.4 477,551 + CCNA_00464 0.22 -0.2 477,556 + CCNA_00464 0.25 -0.5 477,558 - CCNA_00464 0.27 -1.0 477,558 - CCNA_00464 0.27 -0.3 477,558 - CCNA_00464 0.27 +0.3 477,558 - CCNA_00464 0.27 +1.7 477,564 - CCNA_00464 0.30 +0.2 477,574 - CCNA_00464 0.36 -0.5 477,576 + CCNA_00464 0.38 +0.2 477,584 - CCNA_00464 0.42 -0.2 477,584 - CCNA_00464 0.42 +0.7 477,619 + CCNA_00464 0.64 +0.4 477,632 - CCNA_00464 0.72 -1.2 477,673 - -1.0 477,684 + +0.3 477,684 + +0.4 477,692 - -0.1 477,729 + +1.2 477,827 + -0.1 477,827 + +0.2 477,827 + -0.1 477,827 + -1.4 477,835 - -0.8 477,835 - -2.7 477,835 - -2.5 477,835 - +0.3 477,835 - -0.4 477,835 - +0.3 477,835 - -1.8 477,845 - +0.4 477,848 + +0.4 477,850 + +0.5 477,850 + -0.1 477,858 - -0.4 477,860 + -0.4 477,868 - -2.1 477,895 + +0.5 477,901 + +0.1 477,903 - -0.4 477,903 - -0.5 477,903 - +1.2 479,009 + +0.3 479,009 + -0.0 479,009 + -0.1 479,017 - -0.6 479,026 - -1.0 479,106 + +0.8 479,178 + +0.1
Or see this region's nucleotide sequence