Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00382

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00381 and CCNA_00382 are separated by 121 nucleotidesCCNA_00382 and CCNA_00383 are separated by 138 nucleotidesCCNA_00383 and CCNA_00384 are separated by 86 nucleotides CCNA_00381: CCNA_00381 - A/G-specific adenine DNA glycosylase, at 397,466 to 398,515 _00381 CCNA_00382: CCNA_00382 - adenine-specific methyltransferase ccrM, at 398,637 to 399,713 _00382 CCNA_00383: CCNA_00383 - ribonuclease HII, at 399,852 to 400,487 _00383 CCNA_00384: CCNA_00384 - glucan endo-1,3-beta-glucosidase, at 400,574 to 401,479 _00384 Position (kb) 398 399 400Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 397.661 kb on - strand, within CCNA_00381at 397.661 kb on - strand, within CCNA_00381at 397.666 kb on - strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.676 kb on + strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.684 kb on - strand, within CCNA_00381at 397.694 kb on + strand, within CCNA_00381at 397.727 kb on + strand, within CCNA_00381at 397.735 kb on - strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.757 kb on + strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.765 kb on - strand, within CCNA_00381at 397.780 kb on + strand, within CCNA_00381at 397.787 kb on + strand, within CCNA_00381at 397.813 kb on + strand, within CCNA_00381at 397.819 kb on + strand, within CCNA_00381at 397.822 kb on + strand, within CCNA_00381at 397.832 kb on + strand, within CCNA_00381at 397.846 kb on + strand, within CCNA_00381at 397.846 kb on + strand, within CCNA_00381at 397.846 kb on + strand, within CCNA_00381at 397.854 kb on - strand, within CCNA_00381at 397.854 kb on - strand, within CCNA_00381at 397.857 kb on + strand, within CCNA_00381at 397.877 kb on + strand, within CCNA_00381at 397.982 kb on + strand, within CCNA_00381at 397.990 kb on - strand, within CCNA_00381at 398.022 kb on + strand, within CCNA_00381at 398.033 kb on + strand, within CCNA_00381at 398.034 kb on - strand, within CCNA_00381at 398.039 kb on + strand, within CCNA_00381at 398.065 kb on + strand, within CCNA_00381at 398.065 kb on + strand, within CCNA_00381at 398.065 kb on + strand, within CCNA_00381at 398.065 kb on + strand, within CCNA_00381at 398.067 kb on - strand, within CCNA_00381at 398.073 kb on - strand, within CCNA_00381at 398.073 kb on - strand, within CCNA_00381at 398.104 kb on - strand, within CCNA_00381at 398.132 kb on + strand, within CCNA_00381at 398.132 kb on + strand, within CCNA_00381at 398.132 kb on + strand, within CCNA_00381at 398.132 kb on + strand, within CCNA_00381at 398.132 kb on + strand, within CCNA_00381at 398.140 kb on - strand, within CCNA_00381at 398.140 kb on - strand, within CCNA_00381at 398.140 kb on - strand, within CCNA_00381at 398.186 kb on - strand, within CCNA_00381at 398.203 kb on - strand, within CCNA_00381at 398.232 kb on - strand, within CCNA_00381at 398.232 kb on - strand, within CCNA_00381at 398.251 kb on - strand, within CCNA_00381at 398.266 kb on - strand, within CCNA_00381at 398.269 kb on + strand, within CCNA_00381at 398.357 kb on - strand, within CCNA_00381at 398.380 kb on + strand, within CCNA_00381at 398.391 kb on + strand, within CCNA_00381at 398.434 kb on + strandat 398.453 kb on + strandat 398.453 kb on + strandat 398.453 kb on + strandat 398.462 kb on + strandat 398.462 kb on + strandat 398.462 kb on - strandat 398.467 kb on + strandat 398.470 kb on - strandat 398.472 kb on + strandat 398.480 kb on - strandat 398.509 kb on + strandat 398.517 kb on - strandat 398.517 kb on - strandat 398.532 kb on - strandat 398.586 kb on + strandat 398.591 kb on + strandat 398.598 kb on + strandat 398.606 kb on - strandat 398.633 kb on + strandat 398.641 kb on - strandat 398.646 kb on - strandat 398.646 kb on - strandat 399.876 kb on - strandat 399.876 kb on - strandat 399.893 kb on - strandat 399.905 kb on + strandat 399.907 kb on + strandat 399.913 kb on - strandat 399.943 kb on - strand, within CCNA_00383at 399.960 kb on - strand, within CCNA_00383at 399.966 kb on - strand, within CCNA_00383at 399.966 kb on - strand, within CCNA_00383at 399.987 kb on - strand, within CCNA_00383at 400.006 kb on + strand, within CCNA_00383at 400.048 kb on + strand, within CCNA_00383at 400.056 kb on - strand, within CCNA_00383at 400.098 kb on + strand, within CCNA_00383at 400.117 kb on + strand, within CCNA_00383at 400.122 kb on + strand, within CCNA_00383at 400.127 kb on + strand, within CCNA_00383at 400.135 kb on - strand, within CCNA_00383at 400.179 kb on + strand, within CCNA_00383at 400.179 kb on + strand, within CCNA_00383at 400.179 kb on + strand, within CCNA_00383at 400.179 kb on + strand, within CCNA_00383at 400.179 kb on + strand, within CCNA_00383at 400.179 kb on + strand, within CCNA_00383at 400.179 kb on + strand, within CCNA_00383at 400.180 kb on + strand, within CCNA_00383at 400.181 kb on - strand, within CCNA_00383at 400.187 kb on - strand, within CCNA_00383at 400.187 kb on - strand, within CCNA_00383at 400.222 kb on + strand, within CCNA_00383at 400.222 kb on + strand, within CCNA_00383at 400.222 kb on + strand, within CCNA_00383at 400.230 kb on - strand, within CCNA_00383at 400.230 kb on - strand, within CCNA_00383at 400.259 kb on - strand, within CCNA_00383at 400.264 kb on - strand, within CCNA_00383at 400.282 kb on + strand, within CCNA_00383at 400.282 kb on + strand, within CCNA_00383at 400.296 kb on + strand, within CCNA_00383at 400.296 kb on + strand, within CCNA_00383at 400.304 kb on - strand, within CCNA_00383at 400.319 kb on - strand, within CCNA_00383at 400.319 kb on - strand, within CCNA_00383at 400.338 kb on + strand, within CCNA_00383at 400.338 kb on + strand, within CCNA_00383at 400.346 kb on - strand, within CCNA_00383at 400.346 kb on - strand, within CCNA_00383at 400.346 kb on - strand, within CCNA_00383at 400.353 kb on - strand, within CCNA_00383at 400.392 kb on - strand, within CCNA_00383at 400.425 kb on - strandat 400.447 kb on + strandat 400.495 kb on + strandat 400.495 kb on + strandat 400.495 kb on + strandat 400.495 kb on + strandat 400.495 kb on + strandat 400.503 kb on - strandat 400.503 kb on - strandat 400.558 kb on + strandat 400.577 kb on - strandat 400.580 kb on - strandat 400.593 kb on + strandat 400.610 kb on + strandat 400.647 kb on + strandat 400.672 kb on + strand, within CCNA_00384at 400.683 kb on - strand, within CCNA_00384at 400.694 kb on - strand, within CCNA_00384

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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397,661 - CCNA_00381 0.19 +0.1
397,661 - CCNA_00381 0.19 -0.4
397,666 - CCNA_00381 0.19 +0.7
397,676 + CCNA_00381 0.20 -0.3
397,676 + CCNA_00381 0.20 -0.1
397,676 + CCNA_00381 0.20 -0.5
397,676 + CCNA_00381 0.20 -0.5
397,676 + CCNA_00381 0.20 -0.4
397,676 + CCNA_00381 0.20 +0.8
397,676 + CCNA_00381 0.20 -0.5
397,676 + CCNA_00381 0.20 -1.3
397,676 + CCNA_00381 0.20 +0.3
397,676 + CCNA_00381 0.20 +1.1
397,684 - CCNA_00381 0.21 +0.3
397,684 - CCNA_00381 0.21 +0.1
397,684 - CCNA_00381 0.21 -0.6
397,684 - CCNA_00381 0.21 -0.1
397,684 - CCNA_00381 0.21 -0.5
397,684 - CCNA_00381 0.21 -0.6
397,684 - CCNA_00381 0.21 +0.3
397,684 - CCNA_00381 0.21 +1.2
397,684 - CCNA_00381 0.21 -0.4
397,694 + CCNA_00381 0.22 -0.2
397,727 + CCNA_00381 0.25 +0.2
397,735 - CCNA_00381 0.26 +1.0
397,757 + CCNA_00381 0.28 +0.0
397,757 + CCNA_00381 0.28 -0.4
397,757 + CCNA_00381 0.28 +0.0
397,757 + CCNA_00381 0.28 +0.3
397,757 + CCNA_00381 0.28 +0.5
397,757 + CCNA_00381 0.28 -0.6
397,765 - CCNA_00381 0.28 +0.4
397,765 - CCNA_00381 0.28 +0.0
397,765 - CCNA_00381 0.28 +0.3
397,765 - CCNA_00381 0.28 +0.6
397,765 - CCNA_00381 0.28 +0.2
397,765 - CCNA_00381 0.28 -0.0
397,765 - CCNA_00381 0.28 +1.9
397,765 - CCNA_00381 0.28 -0.4
397,765 - CCNA_00381 0.28 +0.8
397,765 - CCNA_00381 0.28 +1.0
397,765 - CCNA_00381 0.28 -0.5
397,765 - CCNA_00381 0.28 -1.2
397,765 - CCNA_00381 0.28 -0.0
397,780 + CCNA_00381 0.30 +0.2
397,787 + CCNA_00381 0.31 +0.6
397,813 + CCNA_00381 0.33 +0.5
397,819 + CCNA_00381 0.34 -1.0
397,822 + CCNA_00381 0.34 -0.1
397,832 + CCNA_00381 0.35 -0.3
397,846 + CCNA_00381 0.36 +0.0
397,846 + CCNA_00381 0.36 -0.5
397,846 + CCNA_00381 0.36 -0.3
397,854 - CCNA_00381 0.37 +0.2
397,854 - CCNA_00381 0.37 +0.5
397,857 + CCNA_00381 0.37 -0.7
397,877 + CCNA_00381 0.39 +0.1
397,982 + CCNA_00381 0.49 +0.5
397,990 - CCNA_00381 0.50 +0.8
398,022 + CCNA_00381 0.53 -1.2
398,033 + CCNA_00381 0.54 +2.3
398,034 - CCNA_00381 0.54 +3.3
398,039 + CCNA_00381 0.55 +0.4
398,065 + CCNA_00381 0.57 +0.1
398,065 + CCNA_00381 0.57 -0.1
398,065 + CCNA_00381 0.57 -0.4
398,065 + CCNA_00381 0.57 +0.1
398,067 - CCNA_00381 0.57 -0.9
398,073 - CCNA_00381 0.58 +0.6
398,073 - CCNA_00381 0.58 -0.1
398,104 - CCNA_00381 0.61 -0.7
398,132 + CCNA_00381 0.63 +0.0
398,132 + CCNA_00381 0.63 +0.2
398,132 + CCNA_00381 0.63 +0.7
398,132 + CCNA_00381 0.63 +0.8
398,132 + CCNA_00381 0.63 -0.4
398,140 - CCNA_00381 0.64 -1.1
398,140 - CCNA_00381 0.64 -0.7
398,140 - CCNA_00381 0.64 -3.1
398,186 - CCNA_00381 0.69 -0.2
398,203 - CCNA_00381 0.70 -0.2
398,232 - CCNA_00381 0.73 -0.7
398,232 - CCNA_00381 0.73 +0.2
398,251 - CCNA_00381 0.75 -0.3
398,266 - CCNA_00381 0.76 +0.5
398,269 + CCNA_00381 0.76 +0.9
398,357 - CCNA_00381 0.85 +0.5
398,380 + CCNA_00381 0.87 -0.5
398,391 + CCNA_00381 0.88 -0.2
398,434 + +0.0
398,453 + +1.4
398,453 + -0.9
398,453 + +0.2
398,462 + +0.6
398,462 + -0.2
398,462 - +0.5
398,467 + -1.8
398,470 - +0.4
398,472 + +0.0
398,480 - +0.8
398,509 + +0.1
398,517 - +0.6
398,517 - +0.6
398,532 - +0.5
398,586 + +0.7
398,591 + +0.4
398,598 + -0.5
398,606 - +0.3
398,633 + -0.7
398,641 - -0.1
398,646 - -0.8
398,646 - +1.0
399,876 - +0.2
399,876 - -0.6
399,893 - +0.6
399,905 + +0.2
399,907 + +0.1
399,913 - -0.1
399,943 - CCNA_00383 0.14 +0.9
399,960 - CCNA_00383 0.17 +0.3
399,966 - CCNA_00383 0.18 -1.2
399,966 - CCNA_00383 0.18 +0.0
399,987 - CCNA_00383 0.21 +0.3
400,006 + CCNA_00383 0.24 +0.2
400,048 + CCNA_00383 0.31 -0.1
400,056 - CCNA_00383 0.32 -0.3
400,098 + CCNA_00383 0.39 +0.9
400,117 + CCNA_00383 0.42 -0.3
400,122 + CCNA_00383 0.42 -1.1
400,127 + CCNA_00383 0.43 +0.3
400,135 - CCNA_00383 0.44 +0.8
400,179 + CCNA_00383 0.51 +0.1
400,179 + CCNA_00383 0.51 -1.1
400,179 + CCNA_00383 0.51 +0.4
400,179 + CCNA_00383 0.51 +2.3
400,179 + CCNA_00383 0.51 -1.6
400,179 + CCNA_00383 0.51 +0.8
400,179 + CCNA_00383 0.51 -0.7
400,180 + CCNA_00383 0.52 -0.4
400,181 - CCNA_00383 0.52 +0.1
400,187 - CCNA_00383 0.53 +0.3
400,187 - CCNA_00383 0.53 +0.3
400,222 + CCNA_00383 0.58 -1.4
400,222 + CCNA_00383 0.58 +0.5
400,222 + CCNA_00383 0.58 -0.2
400,230 - CCNA_00383 0.59 +0.4
400,230 - CCNA_00383 0.59 -0.2
400,259 - CCNA_00383 0.64 +1.1
400,264 - CCNA_00383 0.65 +0.4
400,282 + CCNA_00383 0.68 -0.7
400,282 + CCNA_00383 0.68 -0.4
400,296 + CCNA_00383 0.70 +0.3
400,296 + CCNA_00383 0.70 -0.0
400,304 - CCNA_00383 0.71 -0.9
400,319 - CCNA_00383 0.73 +0.0
400,319 - CCNA_00383 0.73 +0.1
400,338 + CCNA_00383 0.76 -1.7
400,338 + CCNA_00383 0.76 -0.4
400,346 - CCNA_00383 0.78 -0.2
400,346 - CCNA_00383 0.78 +0.5
400,346 - CCNA_00383 0.78 +0.8
400,353 - CCNA_00383 0.79 +0.8
400,392 - CCNA_00383 0.85 +0.4
400,425 - +1.2
400,447 + -0.3
400,495 + -0.7
400,495 + +1.3
400,495 + -0.3
400,495 + -2.7
400,495 + -0.0
400,503 - +0.2
400,503 - -0.1
400,558 + -0.4
400,577 - -0.0
400,580 - -1.4
400,593 + -1.5
400,610 + +0.5
400,647 + +0.0
400,672 + CCNA_00384 0.11 -0.2
400,683 - CCNA_00384 0.12 +0.7
400,694 - CCNA_00384 0.13 -0.4

Or see this region's nucleotide sequence