Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00255

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00254 and CCNA_00255 overlap by 4 nucleotidesCCNA_00255 and CCNA_00256 are separated by 18 nucleotidesCCNA_00256 and CCNA_00257 are separated by 118 nucleotides CCNA_00254: CCNA_00254 - RarD family membrane permease, at 267,164 to 268,066 _00254 CCNA_00255: CCNA_00255 - esterase, at 268,063 to 269,187 _00255 CCNA_00256: CCNA_00256 - pyridoxine kinase, at 269,206 to 270,057 _00256 CCNA_00257: CCNA_00257 - adenosylhomocysteinase, at 270,176 to 271,567 _00257 Position (kb) 268 269 270Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 267.092 kb on + strandat 267.114 kb on + strandat 267.129 kb on + strandat 267.147 kb on + strandat 267.162 kb on - strandat 267.200 kb on - strandat 267.204 kb on + strandat 267.229 kb on - strandat 267.257 kb on - strand, within CCNA_00254at 267.257 kb on - strand, within CCNA_00254at 267.257 kb on - strand, within CCNA_00254at 267.271 kb on + strand, within CCNA_00254at 267.275 kb on - strand, within CCNA_00254at 267.286 kb on + strand, within CCNA_00254at 267.290 kb on - strand, within CCNA_00254at 267.312 kb on + strand, within CCNA_00254at 267.325 kb on - strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.333 kb on + strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.341 kb on - strand, within CCNA_00254at 267.345 kb on + strand, within CCNA_00254at 267.363 kb on - strand, within CCNA_00254at 267.363 kb on - strand, within CCNA_00254at 267.369 kb on + strand, within CCNA_00254at 267.369 kb on + strand, within CCNA_00254at 267.377 kb on - strand, within CCNA_00254at 267.385 kb on + strand, within CCNA_00254at 267.385 kb on + strand, within CCNA_00254at 267.416 kb on + strand, within CCNA_00254at 267.417 kb on - strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.443 kb on + strand, within CCNA_00254at 267.451 kb on - strand, within CCNA_00254at 267.451 kb on - strand, within CCNA_00254at 267.451 kb on - strand, within CCNA_00254at 267.541 kb on - strand, within CCNA_00254at 267.562 kb on + strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.570 kb on - strand, within CCNA_00254at 267.592 kb on + strand, within CCNA_00254at 267.596 kb on - strand, within CCNA_00254at 267.596 kb on - strand, within CCNA_00254at 267.602 kb on + strand, within CCNA_00254at 267.609 kb on + strand, within CCNA_00254at 267.610 kb on - strand, within CCNA_00254at 267.644 kb on + strand, within CCNA_00254at 267.647 kb on - strand, within CCNA_00254at 267.649 kb on + strand, within CCNA_00254at 267.650 kb on + strand, within CCNA_00254at 267.651 kb on - strand, within CCNA_00254at 267.653 kb on - strand, within CCNA_00254at 267.657 kb on - strand, within CCNA_00254at 267.657 kb on - strand, within CCNA_00254at 267.658 kb on - strand, within CCNA_00254at 267.669 kb on + strand, within CCNA_00254at 267.677 kb on - strand, within CCNA_00254at 267.677 kb on - strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.688 kb on + strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.696 kb on - strand, within CCNA_00254at 267.702 kb on - strand, within CCNA_00254at 267.732 kb on + strand, within CCNA_00254at 267.788 kb on - strand, within CCNA_00254at 267.852 kb on + strand, within CCNA_00254at 267.864 kb on - strand, within CCNA_00254at 267.899 kb on + strand, within CCNA_00254at 267.963 kb on + strand, within CCNA_00254at 267.991 kb on - strandat 267.995 kb on - strandat 267.995 kb on - strandat 268.010 kb on - strandat 268.044 kb on - strandat 268.044 kb on - strandat 268.062 kb on + strandat 268.068 kb on + strandat 268.232 kb on + strand, within CCNA_00255at 268.285 kb on + strand, within CCNA_00255at 268.486 kb on + strand, within CCNA_00255at 268.520 kb on + strand, within CCNA_00255at 268.553 kb on + strand, within CCNA_00255at 268.566 kb on - strand, within CCNA_00255at 268.594 kb on - strand, within CCNA_00255at 268.594 kb on - strand, within CCNA_00255at 268.613 kb on + strand, within CCNA_00255at 268.616 kb on - strand, within CCNA_00255at 268.634 kb on + strand, within CCNA_00255at 268.636 kb on - strand, within CCNA_00255at 268.642 kb on - strand, within CCNA_00255at 268.647 kb on - strand, within CCNA_00255at 268.733 kb on - strand, within CCNA_00255at 268.772 kb on - strand, within CCNA_00255at 268.808 kb on + strand, within CCNA_00255at 268.862 kb on - strand, within CCNA_00255at 268.925 kb on - strand, within CCNA_00255at 268.987 kb on + strand, within CCNA_00255at 269.122 kb on + strandat 269.165 kb on - strandat 269.193 kb on + strandat 269.193 kb on + strandat 269.196 kb on - strandat 269.202 kb on - strandat 269.204 kb on + strandat 269.212 kb on - strandat 269.269 kb on + strandat 269.320 kb on - strand, within CCNA_00256at 269.356 kb on + strand, within CCNA_00256at 269.356 kb on + strand, within CCNA_00256at 269.364 kb on - strand, within CCNA_00256at 269.364 kb on - strand, within CCNA_00256at 269.364 kb on - strand, within CCNA_00256at 269.364 kb on - strand, within CCNA_00256at 269.364 kb on - strand, within CCNA_00256at 269.364 kb on - strand, within CCNA_00256at 269.423 kb on - strand, within CCNA_00256at 269.425 kb on + strand, within CCNA_00256at 269.429 kb on + strand, within CCNA_00256at 269.429 kb on + strand, within CCNA_00256at 269.429 kb on + strand, within CCNA_00256at 269.433 kb on - strand, within CCNA_00256at 269.475 kb on - strand, within CCNA_00256at 269.490 kb on - strand, within CCNA_00256at 269.490 kb on - strand, within CCNA_00256at 269.494 kb on + strand, within CCNA_00256at 269.494 kb on + strand, within CCNA_00256at 269.499 kb on + strand, within CCNA_00256at 269.501 kb on + strand, within CCNA_00256at 269.504 kb on + strand, within CCNA_00256at 269.504 kb on + strand, within CCNA_00256at 269.504 kb on + strand, within CCNA_00256at 269.507 kb on - strand, within CCNA_00256at 269.507 kb on - strand, within CCNA_00256at 269.507 kb on - strand, within CCNA_00256at 269.512 kb on - strand, within CCNA_00256at 269.519 kb on + strand, within CCNA_00256at 269.600 kb on - strand, within CCNA_00256at 269.602 kb on - strand, within CCNA_00256at 269.602 kb on - strand, within CCNA_00256at 269.634 kb on + strand, within CCNA_00256at 269.644 kb on + strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.679 kb on - strand, within CCNA_00256at 269.680 kb on - strand, within CCNA_00256at 269.725 kb on + strand, within CCNA_00256at 269.733 kb on - strand, within CCNA_00256at 269.733 kb on - strand, within CCNA_00256at 269.733 kb on - strand, within CCNA_00256at 269.765 kb on + strand, within CCNA_00256at 269.773 kb on - strand, within CCNA_00256at 269.799 kb on - strand, within CCNA_00256at 269.801 kb on - strand, within CCNA_00256at 269.827 kb on - strand, within CCNA_00256at 269.876 kb on + strand, within CCNA_00256at 269.884 kb on - strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.969 kb on + strand, within CCNA_00256at 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.977 kb on - strandat 269.987 kb on + strandat 269.987 kb on + strandat 269.992 kb on + strandat 269.992 kb on + strandat 269.992 kb on + strandat 269.995 kb on - strandat 270.000 kb on - strandat 270.030 kb on + strandat 270.040 kb on + strandat 270.048 kb on - strandat 270.048 kb on - strandat 270.082 kb on - strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.084 kb on + strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.092 kb on - strandat 270.094 kb on - strandat 270.097 kb on - strandat 270.162 kb on + strandat 270.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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267,092 + +0.7
267,114 + +1.4
267,129 + +1.0
267,147 + +0.1
267,162 - +0.0
267,200 - -0.0
267,204 + -0.8
267,229 - -0.1
267,257 - CCNA_00254 0.10 -0.4
267,257 - CCNA_00254 0.10 +0.5
267,257 - CCNA_00254 0.10 +0.0
267,271 + CCNA_00254 0.12 +0.3
267,275 - CCNA_00254 0.12 -0.0
267,286 + CCNA_00254 0.14 +0.2
267,290 - CCNA_00254 0.14 +0.3
267,312 + CCNA_00254 0.16 +0.1
267,325 - CCNA_00254 0.18 +0.4
267,333 + CCNA_00254 0.19 +0.1
267,333 + CCNA_00254 0.19 -0.5
267,333 + CCNA_00254 0.19 +0.8
267,333 + CCNA_00254 0.19 -0.4
267,333 + CCNA_00254 0.19 +0.3
267,333 + CCNA_00254 0.19 +0.0
267,333 + CCNA_00254 0.19 +1.3
267,341 - CCNA_00254 0.20 +0.3
267,341 - CCNA_00254 0.20 +0.3
267,341 - CCNA_00254 0.20 +2.4
267,341 - CCNA_00254 0.20 +0.3
267,345 + CCNA_00254 0.20 +0.6
267,363 - CCNA_00254 0.22 -0.1
267,363 - CCNA_00254 0.22 +0.2
267,369 + CCNA_00254 0.23 -0.3
267,369 + CCNA_00254 0.23 +1.5
267,377 - CCNA_00254 0.24 -0.5
267,385 + CCNA_00254 0.24 +1.1
267,385 + CCNA_00254 0.24 -0.3
267,416 + CCNA_00254 0.28 +0.1
267,417 - CCNA_00254 0.28 -0.5
267,443 + CCNA_00254 0.31 -0.5
267,443 + CCNA_00254 0.31 +0.2
267,451 - CCNA_00254 0.32 -1.0
267,451 - CCNA_00254 0.32 -2.8
267,451 - CCNA_00254 0.32 +0.4
267,541 - CCNA_00254 0.42 -0.8
267,562 + CCNA_00254 0.44 -0.4
267,570 - CCNA_00254 0.45 +1.7
267,570 - CCNA_00254 0.45 +0.2
267,570 - CCNA_00254 0.45 +0.2
267,570 - CCNA_00254 0.45 +0.7
267,592 + CCNA_00254 0.47 +0.4
267,596 - CCNA_00254 0.48 +0.4
267,596 - CCNA_00254 0.48 +0.3
267,602 + CCNA_00254 0.49 +0.2
267,609 + CCNA_00254 0.49 +0.7
267,610 - CCNA_00254 0.49 -0.2
267,644 + CCNA_00254 0.53 -0.9
267,647 - CCNA_00254 0.53 +1.1
267,649 + CCNA_00254 0.54 -0.9
267,650 + CCNA_00254 0.54 -0.9
267,651 - CCNA_00254 0.54 +0.4
267,653 - CCNA_00254 0.54 +0.5
267,657 - CCNA_00254 0.55 +0.1
267,657 - CCNA_00254 0.55 -0.3
267,658 - CCNA_00254 0.55 +0.8
267,669 + CCNA_00254 0.56 +0.7
267,677 - CCNA_00254 0.57 +0.1
267,677 - CCNA_00254 0.57 +0.1
267,688 + CCNA_00254 0.58 +0.2
267,688 + CCNA_00254 0.58 +0.8
267,688 + CCNA_00254 0.58 -0.8
267,688 + CCNA_00254 0.58 -0.3
267,696 - CCNA_00254 0.59 +0.1
267,696 - CCNA_00254 0.59 +0.6
267,696 - CCNA_00254 0.59 +2.2
267,696 - CCNA_00254 0.59 -0.2
267,696 - CCNA_00254 0.59 +1.0
267,696 - CCNA_00254 0.59 -1.0
267,696 - CCNA_00254 0.59 +0.3
267,696 - CCNA_00254 0.59 +0.2
267,702 - CCNA_00254 0.60 -1.6
267,732 + CCNA_00254 0.63 +0.9
267,788 - CCNA_00254 0.69 -0.4
267,852 + CCNA_00254 0.76 +0.6
267,864 - CCNA_00254 0.78 -0.5
267,899 + CCNA_00254 0.81 +0.4
267,963 + CCNA_00254 0.88 +0.7
267,991 - -0.2
267,995 - -0.2
267,995 - -0.6
268,010 - +1.3
268,044 - +1.4
268,044 - -0.5
268,062 + -0.5
268,068 + -0.8
268,232 + CCNA_00255 0.15 +0.4
268,285 + CCNA_00255 0.20 -0.1
268,486 + CCNA_00255 0.38 -0.8
268,520 + CCNA_00255 0.41 -1.3
268,553 + CCNA_00255 0.44 -0.5
268,566 - CCNA_00255 0.45 -1.6
268,594 - CCNA_00255 0.47 +0.0
268,594 - CCNA_00255 0.47 -1.3
268,613 + CCNA_00255 0.49 -0.3
268,616 - CCNA_00255 0.49 -2.0
268,634 + CCNA_00255 0.51 -3.0
268,636 - CCNA_00255 0.51 -1.1
268,642 - CCNA_00255 0.51 -0.1
268,647 - CCNA_00255 0.52 +0.3
268,733 - CCNA_00255 0.60 -0.4
268,772 - CCNA_00255 0.63 -1.0
268,808 + CCNA_00255 0.66 -0.8
268,862 - CCNA_00255 0.71 -0.1
268,925 - CCNA_00255 0.77 -0.3
268,987 + CCNA_00255 0.82 +0.1
269,122 + +0.6
269,165 - +0.1
269,193 + +0.3
269,193 + -1.2
269,196 - +0.5
269,202 - -0.1
269,204 + +0.4
269,212 - +0.7
269,269 + -0.1
269,320 - CCNA_00256 0.13 +0.1
269,356 + CCNA_00256 0.18 -0.3
269,356 + CCNA_00256 0.18 -0.7
269,364 - CCNA_00256 0.19 -0.5
269,364 - CCNA_00256 0.19 -0.3
269,364 - CCNA_00256 0.19 -0.0
269,364 - CCNA_00256 0.19 -1.5
269,364 - CCNA_00256 0.19 +0.9
269,364 - CCNA_00256 0.19 +0.0
269,423 - CCNA_00256 0.25 +0.0
269,425 + CCNA_00256 0.26 -0.0
269,429 + CCNA_00256 0.26 -0.1
269,429 + CCNA_00256 0.26 +0.2
269,429 + CCNA_00256 0.26 -0.5
269,433 - CCNA_00256 0.27 +0.1
269,475 - CCNA_00256 0.32 +0.2
269,490 - CCNA_00256 0.33 -0.6
269,490 - CCNA_00256 0.33 +0.3
269,494 + CCNA_00256 0.34 +0.5
269,494 + CCNA_00256 0.34 +0.5
269,499 + CCNA_00256 0.34 -0.7
269,501 + CCNA_00256 0.35 -0.7
269,504 + CCNA_00256 0.35 -0.5
269,504 + CCNA_00256 0.35 +0.2
269,504 + CCNA_00256 0.35 -0.3
269,507 - CCNA_00256 0.35 +0.1
269,507 - CCNA_00256 0.35 -0.0
269,507 - CCNA_00256 0.35 +2.5
269,512 - CCNA_00256 0.36 -1.4
269,519 + CCNA_00256 0.37 -0.0
269,600 - CCNA_00256 0.46 +1.3
269,602 - CCNA_00256 0.46 +0.4
269,602 - CCNA_00256 0.46 +0.5
269,634 + CCNA_00256 0.50 +0.1
269,644 + CCNA_00256 0.51 -0.8
269,679 - CCNA_00256 0.56 +0.2
269,679 - CCNA_00256 0.56 +0.4
269,680 - CCNA_00256 0.56 -0.0
269,725 + CCNA_00256 0.61 -0.8
269,733 - CCNA_00256 0.62 -0.3
269,733 - CCNA_00256 0.62 +0.1
269,733 - CCNA_00256 0.62 +0.2
269,765 + CCNA_00256 0.66 -0.0
269,773 - CCNA_00256 0.67 +0.2
269,799 - CCNA_00256 0.70 +0.0
269,801 - CCNA_00256 0.70 -0.2
269,827 - CCNA_00256 0.73 +0.2
269,876 + CCNA_00256 0.79 -0.3
269,884 - CCNA_00256 0.80 -0.0
269,969 + CCNA_00256 0.90 -0.5
269,969 + CCNA_00256 0.90 -1.0
269,969 + CCNA_00256 0.90 -0.4
269,969 + CCNA_00256 0.90 +0.2
269,969 + CCNA_00256 0.90 -0.6
269,977 - -0.0
269,977 - +0.3
269,977 - +0.6
269,977 - -0.0
269,977 - -0.1
269,987 + +0.3
269,987 + -0.0
269,992 + +0.3
269,992 + -0.2
269,992 + +0.4
269,995 - +0.1
270,000 - +1.1
270,030 + +0.2
270,040 + -0.8
270,048 - -0.0
270,048 - -0.6
270,082 - +1.2
270,084 + -0.9
270,084 + +0.4
270,084 + +1.1
270,084 + -0.2
270,084 + -0.0
270,084 + +0.2
270,084 + +1.6
270,084 + +0.1
270,084 + -0.1
270,092 - +0.8
270,092 - -0.3
270,092 - -0.5
270,092 - -0.3
270,092 - +0.2
270,092 - -0.3
270,094 - +0.9
270,097 - -0.5
270,162 + -1.1
270,182 - -0.0

Or see this region's nucleotide sequence