Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00223

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00222 and CCNA_00223 are separated by 8 nucleotidesCCNA_00223 and CCNA_00224 overlap by 4 nucleotides CCNA_00222: CCNA_00222 - glucose-6-phosphate isomerase/glucose-6 phosphate 1-epimerase, at 238,241 to 239,860 _00222 CCNA_00223: CCNA_00223 - esterase lipase Family protein, at 239,869 to 240,651 _00223 CCNA_00224: CCNA_00224 - TonB-dependent receptor protein, at 240,648 to 242,693 _00224 Position (kb) 239 240 241Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.854 kb on + strandat 239.859 kb on + strandat 239.915 kb on - strandat 239.947 kb on + strandat 240.014 kb on - strand, within CCNA_00223at 240.058 kb on - strand, within CCNA_00223at 240.060 kb on + strand, within CCNA_00223at 240.061 kb on + strand, within CCNA_00223at 240.074 kb on - strand, within CCNA_00223at 240.082 kb on + strand, within CCNA_00223at 240.090 kb on - strand, within CCNA_00223at 240.113 kb on + strand, within CCNA_00223at 240.134 kb on + strand, within CCNA_00223at 240.154 kb on + strand, within CCNA_00223at 240.157 kb on - strand, within CCNA_00223at 240.162 kb on - strand, within CCNA_00223at 240.194 kb on - strand, within CCNA_00223at 240.199 kb on + strand, within CCNA_00223at 240.199 kb on + strand, within CCNA_00223at 240.262 kb on + strand, within CCNA_00223at 240.283 kb on - strand, within CCNA_00223at 240.299 kb on + strand, within CCNA_00223at 240.307 kb on - strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.312 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.318 kb on + strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.320 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.326 kb on - strand, within CCNA_00223at 240.397 kb on + strand, within CCNA_00223at 240.402 kb on + strand, within CCNA_00223at 240.407 kb on + strand, within CCNA_00223at 240.407 kb on + strand, within CCNA_00223at 240.410 kb on - strand, within CCNA_00223at 240.410 kb on - strand, within CCNA_00223at 240.424 kb on + strand, within CCNA_00223at 240.430 kb on - strand, within CCNA_00223at 240.431 kb on - strand, within CCNA_00223at 240.440 kb on + strand, within CCNA_00223at 240.440 kb on + strand, within CCNA_00223at 240.456 kb on + strand, within CCNA_00223at 240.456 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.468 kb on + strand, within CCNA_00223at 240.498 kb on + strand, within CCNA_00223at 240.506 kb on - strand, within CCNA_00223at 240.506 kb on - strand, within CCNA_00223at 240.511 kb on - strand, within CCNA_00223at 240.511 kb on - strand, within CCNA_00223at 240.534 kb on - strand, within CCNA_00223at 240.539 kb on - strand, within CCNA_00223at 240.575 kb on + strandat 240.615 kb on + strandat 240.682 kb on - strandat 240.682 kb on - strandat 240.702 kb on + strandat 240.702 kb on + strandat 240.702 kb on + strandat 240.707 kb on + strandat 240.710 kb on - strandat 240.788 kb on - strandat 240.804 kb on + strandat 240.812 kb on - strandat 240.822 kb on - strandat 240.822 kb on - strandat 240.827 kb on - strandat 240.840 kb on + strandat 240.841 kb on - strandat 240.848 kb on - strandat 240.848 kb on - strandat 240.864 kb on + strand, within CCNA_00224at 240.867 kb on - strand, within CCNA_00224at 240.872 kb on - strand, within CCNA_00224at 240.872 kb on - strand, within CCNA_00224at 240.877 kb on - strand, within CCNA_00224at 240.925 kb on + strand, within CCNA_00224at 240.925 kb on + strand, within CCNA_00224at 240.925 kb on + strand, within CCNA_00224at 240.933 kb on - strand, within CCNA_00224at 240.947 kb on + strand, within CCNA_00224at 240.947 kb on + strand, within CCNA_00224at 240.958 kb on + strand, within CCNA_00224at 240.963 kb on + strand, within CCNA_00224at 240.971 kb on - strand, within CCNA_00224at 241.014 kb on - strand, within CCNA_00224at 241.017 kb on + strand, within CCNA_00224at 241.049 kb on + strand, within CCNA_00224at 241.050 kb on + strand, within CCNA_00224at 241.063 kb on + strand, within CCNA_00224at 241.088 kb on + strand, within CCNA_00224at 241.121 kb on - strand, within CCNA_00224at 241.261 kb on + strand, within CCNA_00224at 241.276 kb on + strand, within CCNA_00224at 241.327 kb on - strand, within CCNA_00224at 241.345 kb on + strand, within CCNA_00224at 241.402 kb on + strand, within CCNA_00224at 241.428 kb on - strand, within CCNA_00224at 241.440 kb on - strand, within CCNA_00224at 241.446 kb on + strand, within CCNA_00224at 241.462 kb on + strand, within CCNA_00224at 241.486 kb on + strand, within CCNA_00224at 241.493 kb on + strand, within CCNA_00224at 241.510 kb on + strand, within CCNA_00224at 241.522 kb on + strand, within CCNA_00224at 241.537 kb on - strand, within CCNA_00224at 241.540 kb on + strand, within CCNA_00224at 241.553 kb on - strand, within CCNA_00224at 241.575 kb on - strand, within CCNA_00224at 241.593 kb on - strand, within CCNA_00224at 241.616 kb on - strand, within CCNA_00224at 241.644 kb on + strand, within CCNA_00224at 241.644 kb on + strand, within CCNA_00224

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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239,854 + +1.6
239,859 + +0.6
239,915 - +2.3
239,947 + +0.2
240,014 - CCNA_00223 0.19 +0.3
240,058 - CCNA_00223 0.24 -1.2
240,060 + CCNA_00223 0.24 -0.2
240,061 + CCNA_00223 0.25 +0.4
240,074 - CCNA_00223 0.26 +0.1
240,082 + CCNA_00223 0.27 +0.0
240,090 - CCNA_00223 0.28 +1.7
240,113 + CCNA_00223 0.31 -0.4
240,134 + CCNA_00223 0.34 -0.1
240,154 + CCNA_00223 0.36 +0.2
240,157 - CCNA_00223 0.37 -3.3
240,162 - CCNA_00223 0.37 -0.2
240,194 - CCNA_00223 0.42 -0.4
240,199 + CCNA_00223 0.42 +0.5
240,199 + CCNA_00223 0.42 -0.1
240,262 + CCNA_00223 0.50 +0.6
240,283 - CCNA_00223 0.53 +0.4
240,299 + CCNA_00223 0.55 +0.7
240,307 - CCNA_00223 0.56 -0.9
240,312 + CCNA_00223 0.57 -0.2
240,312 + CCNA_00223 0.57 +0.2
240,312 + CCNA_00223 0.57 +0.0
240,312 + CCNA_00223 0.57 +0.6
240,312 + CCNA_00223 0.57 +1.8
240,312 + CCNA_00223 0.57 +0.8
240,318 + CCNA_00223 0.57 -0.4
240,318 + CCNA_00223 0.57 +0.5
240,318 + CCNA_00223 0.57 +0.4
240,318 + CCNA_00223 0.57 +0.3
240,318 + CCNA_00223 0.57 -0.8
240,320 - CCNA_00223 0.58 -1.1
240,320 - CCNA_00223 0.58 -0.7
240,326 - CCNA_00223 0.58 +0.1
240,326 - CCNA_00223 0.58 -0.4
240,326 - CCNA_00223 0.58 +1.0
240,326 - CCNA_00223 0.58 -0.5
240,397 + CCNA_00223 0.67 -0.2
240,402 + CCNA_00223 0.68 +0.4
240,407 + CCNA_00223 0.69 +0.4
240,407 + CCNA_00223 0.69 +1.2
240,410 - CCNA_00223 0.69 -0.5
240,410 - CCNA_00223 0.69 -0.2
240,424 + CCNA_00223 0.71 +0.3
240,430 - CCNA_00223 0.72 -0.3
240,431 - CCNA_00223 0.72 -0.3
240,440 + CCNA_00223 0.73 +0.5
240,440 + CCNA_00223 0.73 +0.0
240,456 + CCNA_00223 0.75 +0.4
240,456 + CCNA_00223 0.75 +0.3
240,468 + CCNA_00223 0.77 +0.6
240,468 + CCNA_00223 0.77 +1.4
240,468 + CCNA_00223 0.77 +0.7
240,468 + CCNA_00223 0.77 -1.6
240,498 + CCNA_00223 0.80 -0.8
240,506 - CCNA_00223 0.81 -0.7
240,506 - CCNA_00223 0.81 -0.9
240,511 - CCNA_00223 0.82 +1.0
240,511 - CCNA_00223 0.82 +0.2
240,534 - CCNA_00223 0.85 +1.1
240,539 - CCNA_00223 0.86 +1.1
240,575 + +1.2
240,615 + -0.3
240,682 - +0.9
240,682 - +0.9
240,702 + -0.7
240,702 + +0.4
240,702 + +0.1
240,707 + -0.3
240,710 - +0.5
240,788 - +0.3
240,804 + -0.0
240,812 - -0.3
240,822 - +0.1
240,822 - -0.9
240,827 - +0.3
240,840 + -1.1
240,841 - +0.3
240,848 - +0.2
240,848 - +1.2
240,864 + CCNA_00224 0.11 -0.7
240,867 - CCNA_00224 0.11 +0.3
240,872 - CCNA_00224 0.11 -0.4
240,872 - CCNA_00224 0.11 +0.4
240,877 - CCNA_00224 0.11 -0.5
240,925 + CCNA_00224 0.14 -0.1
240,925 + CCNA_00224 0.14 -0.9
240,925 + CCNA_00224 0.14 +0.1
240,933 - CCNA_00224 0.14 +1.8
240,947 + CCNA_00224 0.15 +0.4
240,947 + CCNA_00224 0.15 -2.5
240,958 + CCNA_00224 0.15 +0.3
240,963 + CCNA_00224 0.15 -0.3
240,971 - CCNA_00224 0.16 +0.7
241,014 - CCNA_00224 0.18 -0.6
241,017 + CCNA_00224 0.18 +1.5
241,049 + CCNA_00224 0.20 +0.3
241,050 + CCNA_00224 0.20 -0.4
241,063 + CCNA_00224 0.20 -0.5
241,088 + CCNA_00224 0.22 +0.5
241,121 - CCNA_00224 0.23 +0.2
241,261 + CCNA_00224 0.30 -1.8
241,276 + CCNA_00224 0.31 -0.4
241,327 - CCNA_00224 0.33 -0.6
241,345 + CCNA_00224 0.34 +0.1
241,402 + CCNA_00224 0.37 -1.9
241,428 - CCNA_00224 0.38 -0.0
241,440 - CCNA_00224 0.39 -0.6
241,446 + CCNA_00224 0.39 +0.2
241,462 + CCNA_00224 0.40 +0.3
241,486 + CCNA_00224 0.41 -0.8
241,493 + CCNA_00224 0.41 -0.7
241,510 + CCNA_00224 0.42 -1.0
241,522 + CCNA_00224 0.43 -3.2
241,537 - CCNA_00224 0.43 +0.5
241,540 + CCNA_00224 0.44 -0.3
241,553 - CCNA_00224 0.44 +0.3
241,575 - CCNA_00224 0.45 -0.3
241,593 - CCNA_00224 0.46 +0.3
241,616 - CCNA_00224 0.47 +0.5
241,644 + CCNA_00224 0.49 -0.2
241,644 + CCNA_00224 0.49 +0.6

Or see this region's nucleotide sequence