Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00191

Experiment: PYE with CHIR-090 40 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00188 and CCNA_00189 are separated by 143 nucleotidesCCNA_00189 and CCNA_00190 are separated by 1 nucleotidesCCNA_00190 and CCNA_00191 are separated by 125 nucleotidesCCNA_00191 and CCNA_00192 are separated by 0 nucleotides CCNA_00188: CCNA_00188 - ABC transporter ATP-binding protein, at 202,763 to 203,725 _00188 CCNA_00189: CCNA_00189 - zinc-finger domain protein, at 203,869 to 204,135 _00189 CCNA_00190: CCNA_00190 - acyl-CoA hydrolase, at 204,137 to 204,571 _00190 CCNA_00191: CCNA_00191 - N-acetylglutamate synthase domain protein, at 204,697 to 205,173 _00191 CCNA_00192: CCNA_00192 - long-chain-fatty-acid--CoA ligase, at 205,174 to 206,793 _00192 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.697 kb on - strandat 203.731 kb on + strandat 203.731 kb on + strandat 203.739 kb on - strandat 203.739 kb on - strandat 203.772 kb on + strandat 203.772 kb on + strandat 203.775 kb on - strandat 203.810 kb on + strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.818 kb on - strandat 203.839 kb on - strandat 203.927 kb on - strand, within CCNA_00189at 204.008 kb on + strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.016 kb on - strand, within CCNA_00189at 204.094 kb on + strand, within CCNA_00189at 204.389 kb on + strand, within CCNA_00190at 204.392 kb on - strand, within CCNA_00190at 204.452 kb on - strand, within CCNA_00190at 204.469 kb on - strand, within CCNA_00190at 204.504 kb on - strand, within CCNA_00190at 204.526 kb on - strand, within CCNA_00190at 204.565 kb on + strandat 204.579 kb on - strandat 204.581 kb on + strandat 204.668 kb on + strandat 204.693 kb on - strandat 204.721 kb on - strandat 204.740 kb on - strandat 204.761 kb on - strand, within CCNA_00191at 204.777 kb on + strand, within CCNA_00191at 204.800 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.844 kb on - strand, within CCNA_00191at 204.896 kb on + strand, within CCNA_00191at 204.906 kb on + strand, within CCNA_00191at 204.914 kb on - strand, within CCNA_00191at 204.956 kb on - strand, within CCNA_00191at 204.956 kb on - strand, within CCNA_00191at 204.967 kb on + strand, within CCNA_00191at 204.976 kb on - strand, within CCNA_00191at 204.985 kb on + strand, within CCNA_00191at 205.036 kb on + strand, within CCNA_00191at 205.038 kb on - strand, within CCNA_00191at 205.039 kb on + strand, within CCNA_00191at 205.047 kb on + strand, within CCNA_00191at 205.089 kb on + strand, within CCNA_00191at 205.170 kb on + strandat 205.204 kb on + strandat 205.209 kb on + strandat 205.319 kb on + strandat 205.376 kb on + strand, within CCNA_00192at 205.376 kb on + strand, within CCNA_00192at 205.379 kb on - strand, within CCNA_00192at 205.411 kb on + strand, within CCNA_00192at 205.419 kb on - strand, within CCNA_00192at 205.459 kb on + strand, within CCNA_00192at 205.463 kb on - strand, within CCNA_00192at 205.504 kb on + strand, within CCNA_00192at 205.600 kb on - strand, within CCNA_00192at 205.616 kb on - strand, within CCNA_00192at 205.627 kb on - strand, within CCNA_00192at 205.640 kb on - strand, within CCNA_00192at 205.669 kb on - strand, within CCNA_00192at 205.676 kb on + strand, within CCNA_00192at 205.702 kb on - strand, within CCNA_00192at 205.711 kb on + strand, within CCNA_00192at 205.711 kb on + strand, within CCNA_00192at 205.719 kb on - strand, within CCNA_00192at 205.720 kb on + strand, within CCNA_00192at 205.721 kb on + strand, within CCNA_00192at 205.736 kb on + strand, within CCNA_00192at 205.743 kb on - strand, within CCNA_00192at 205.743 kb on - strand, within CCNA_00192at 205.744 kb on - strand, within CCNA_00192at 205.778 kb on - strand, within CCNA_00192at 205.778 kb on - strand, within CCNA_00192at 205.801 kb on + strand, within CCNA_00192at 205.801 kb on + strand, within CCNA_00192at 205.801 kb on + strand, within CCNA_00192at 205.814 kb on + strand, within CCNA_00192at 205.814 kb on + strand, within CCNA_00192at 205.814 kb on + strand, within CCNA_00192at 205.814 kb on + strand, within CCNA_00192at 205.819 kb on + strand, within CCNA_00192at 205.822 kb on - strand, within CCNA_00192at 205.822 kb on - strand, within CCNA_00192at 205.827 kb on - strand, within CCNA_00192at 205.828 kb on + strand, within CCNA_00192at 205.836 kb on - strand, within CCNA_00192at 205.855 kb on + strand, within CCNA_00192at 205.855 kb on + strand, within CCNA_00192at 205.856 kb on - strand, within CCNA_00192at 205.873 kb on + strand, within CCNA_00192at 205.873 kb on + strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.881 kb on - strand, within CCNA_00192at 205.916 kb on - strand, within CCNA_00192at 206.011 kb on + strand, within CCNA_00192at 206.019 kb on - strand, within CCNA_00192at 206.065 kb on + strand, within CCNA_00192at 206.109 kb on + strand, within CCNA_00192at 206.109 kb on + strand, within CCNA_00192at 206.109 kb on + strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.117 kb on - strand, within CCNA_00192at 206.127 kb on - strand, within CCNA_00192at 206.139 kb on + strand, within CCNA_00192at 206.139 kb on + strand, within CCNA_00192at 206.147 kb on - strand, within CCNA_00192at 206.147 kb on - strand, within CCNA_00192at 206.147 kb on - strand, within CCNA_00192at 206.154 kb on - strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.158 kb on + strand, within CCNA_00192at 206.166 kb on - strand, within CCNA_00192at 206.166 kb on - strand, within CCNA_00192at 206.166 kb on - strand, within CCNA_00192at 206.166 kb on - strand, within CCNA_00192

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
remove
203,697 - +3.2
203,731 + -0.5
203,731 + +1.1
203,739 - -0.0
203,739 - -0.3
203,772 + -0.9
203,772 + +0.2
203,775 - +0.9
203,810 + +1.2
203,818 - +0.8
203,818 - +0.6
203,818 - +0.4
203,839 - +0.2
203,927 - CCNA_00189 0.22 -0.6
204,008 + CCNA_00189 0.52 +0.2
204,016 - CCNA_00189 0.55 -0.1
204,016 - CCNA_00189 0.55 -1.6
204,016 - CCNA_00189 0.55 -0.4
204,016 - CCNA_00189 0.55 -0.8
204,094 + CCNA_00189 0.84 +1.0
204,389 + CCNA_00190 0.58 -0.1
204,392 - CCNA_00190 0.59 -2.4
204,452 - CCNA_00190 0.72 +0.4
204,469 - CCNA_00190 0.76 +0.0
204,504 - CCNA_00190 0.84 +0.5
204,526 - CCNA_00190 0.89 +0.1
204,565 + +0.5
204,579 - +0.1
204,581 + +0.8
204,668 + +0.3
204,693 - -0.1
204,721 - -0.1
204,740 - +0.2
204,761 - CCNA_00191 0.13 -1.2
204,777 + CCNA_00191 0.17 -0.1
204,800 - CCNA_00191 0.22 -0.0
204,844 - CCNA_00191 0.31 -0.8
204,844 - CCNA_00191 0.31 -1.5
204,844 - CCNA_00191 0.31 +1.2
204,896 + CCNA_00191 0.42 +0.4
204,906 + CCNA_00191 0.44 -1.5
204,914 - CCNA_00191 0.45 -3.2
204,956 - CCNA_00191 0.54 -0.1
204,956 - CCNA_00191 0.54 -0.5
204,967 + CCNA_00191 0.57 +0.1
204,976 - CCNA_00191 0.58 -0.3
204,985 + CCNA_00191 0.60 +0.0
205,036 + CCNA_00191 0.71 -0.7
205,038 - CCNA_00191 0.71 +0.4
205,039 + CCNA_00191 0.72 -0.4
205,047 + CCNA_00191 0.73 +1.2
205,089 + CCNA_00191 0.82 -0.8
205,170 + -0.8
205,204 + +0.1
205,209 + +0.3
205,319 + +1.3
205,376 + CCNA_00192 0.12 +1.0
205,376 + CCNA_00192 0.12 -0.4
205,379 - CCNA_00192 0.13 -0.7
205,411 + CCNA_00192 0.15 -0.6
205,419 - CCNA_00192 0.15 +0.6
205,459 + CCNA_00192 0.18 -1.6
205,463 - CCNA_00192 0.18 +0.3
205,504 + CCNA_00192 0.20 -1.0
205,600 - CCNA_00192 0.26 +0.1
205,616 - CCNA_00192 0.27 -0.6
205,627 - CCNA_00192 0.28 +0.5
205,640 - CCNA_00192 0.29 -1.2
205,669 - CCNA_00192 0.31 -0.8
205,676 + CCNA_00192 0.31 +0.6
205,702 - CCNA_00192 0.33 -0.9
205,711 + CCNA_00192 0.33 -0.0
205,711 + CCNA_00192 0.33 +0.1
205,719 - CCNA_00192 0.34 +0.4
205,720 + CCNA_00192 0.34 -0.3
205,721 + CCNA_00192 0.34 -1.6
205,736 + CCNA_00192 0.35 -1.1
205,743 - CCNA_00192 0.35 +0.1
205,743 - CCNA_00192 0.35 +0.1
205,744 - CCNA_00192 0.35 +0.2
205,778 - CCNA_00192 0.37 -0.9
205,778 - CCNA_00192 0.37 +0.5
205,801 + CCNA_00192 0.39 -2.1
205,801 + CCNA_00192 0.39 +0.5
205,801 + CCNA_00192 0.39 -0.6
205,814 + CCNA_00192 0.40 -2.3
205,814 + CCNA_00192 0.40 -0.1
205,814 + CCNA_00192 0.40 -1.1
205,814 + CCNA_00192 0.40 +0.7
205,819 + CCNA_00192 0.40 -0.4
205,822 - CCNA_00192 0.40 -0.0
205,822 - CCNA_00192 0.40 -0.0
205,827 - CCNA_00192 0.40 -0.4
205,828 + CCNA_00192 0.40 +0.2
205,836 - CCNA_00192 0.41 -0.6
205,855 + CCNA_00192 0.42 +0.9
205,855 + CCNA_00192 0.42 -0.4
205,856 - CCNA_00192 0.42 +0.8
205,873 + CCNA_00192 0.43 -0.4
205,873 + CCNA_00192 0.43 +0.1
205,881 - CCNA_00192 0.44 +0.0
205,881 - CCNA_00192 0.44 +0.2
205,881 - CCNA_00192 0.44 +0.0
205,916 - CCNA_00192 0.46 -1.0
206,011 + CCNA_00192 0.52 -0.8
206,019 - CCNA_00192 0.52 -1.5
206,065 + CCNA_00192 0.55 +0.1
206,109 + CCNA_00192 0.58 -1.3
206,109 + CCNA_00192 0.58 +0.5
206,109 + CCNA_00192 0.58 +0.0
206,117 - CCNA_00192 0.58 -0.6
206,117 - CCNA_00192 0.58 +0.1
206,117 - CCNA_00192 0.58 +0.4
206,117 - CCNA_00192 0.58 -0.7
206,127 - CCNA_00192 0.59 -0.3
206,139 + CCNA_00192 0.60 -0.8
206,139 + CCNA_00192 0.60 -1.0
206,147 - CCNA_00192 0.60 +0.4
206,147 - CCNA_00192 0.60 +0.9
206,147 - CCNA_00192 0.60 +1.1
206,154 - CCNA_00192 0.60 +0.0
206,158 + CCNA_00192 0.61 +0.1
206,158 + CCNA_00192 0.61 +0.2
206,158 + CCNA_00192 0.61 +0.7
206,158 + CCNA_00192 0.61 -0.2
206,166 - CCNA_00192 0.61 +0.2
206,166 - CCNA_00192 0.61 +0.3
206,166 - CCNA_00192 0.61 +0.8
206,166 - CCNA_00192 0.61 +0.3

Or see this region's nucleotide sequence