Experiment: PYE with CHIR-090 40 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00136 and CCNA_00137 are separated by 33 nucleotides CCNA_00137 and CCNA_00138 are separated by 221 nucleotides
CCNA_00136: CCNA_00136 - AmpG protein, at 145,273 to 146,952
_00136
CCNA_00137: CCNA_00137 - hybrid two-component histidine kinase/receiver protein ShkA, at 146,986 to 148,530
_00137
CCNA_00138: CCNA_00138 - TonB-dependent receptor, at 148,752 to 150,944
_00138
Position (kb) 146
147
148
149 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 146.051 kb on - strand, within CCNA_00136 at 146.077 kb on + strand, within CCNA_00136 at 146.106 kb on - strand, within CCNA_00136 at 146.132 kb on + strand, within CCNA_00136 at 146.132 kb on + strand, within CCNA_00136 at 146.132 kb on + strand, within CCNA_00136 at 146.140 kb on - strand, within CCNA_00136 at 146.143 kb on + strand, within CCNA_00136 at 146.151 kb on - strand, within CCNA_00136 at 146.165 kb on + strand, within CCNA_00136 at 146.173 kb on - strand, within CCNA_00136 at 146.178 kb on + strand, within CCNA_00136 at 146.196 kb on + strand, within CCNA_00136 at 146.196 kb on + strand, within CCNA_00136 at 146.196 kb on + strand, within CCNA_00136 at 146.196 kb on + strand, within CCNA_00136 at 146.204 kb on - strand, within CCNA_00136 at 146.204 kb on - strand, within CCNA_00136 at 146.301 kb on + strand, within CCNA_00136 at 146.319 kb on - strand, within CCNA_00136 at 146.321 kb on - strand, within CCNA_00136 at 146.330 kb on + strand, within CCNA_00136 at 146.338 kb on - strand, within CCNA_00136 at 146.357 kb on + strand, within CCNA_00136 at 146.357 kb on + strand, within CCNA_00136 at 146.378 kb on + strand, within CCNA_00136 at 146.378 kb on + strand, within CCNA_00136 at 146.378 kb on + strand, within CCNA_00136 at 146.383 kb on + strand, within CCNA_00136 at 146.386 kb on - strand, within CCNA_00136 at 146.386 kb on - strand, within CCNA_00136 at 146.396 kb on - strand, within CCNA_00136 at 146.396 kb on - strand, within CCNA_00136 at 146.408 kb on + strand, within CCNA_00136 at 146.421 kb on + strand, within CCNA_00136 at 146.445 kb on - strand, within CCNA_00136 at 146.462 kb on - strand, within CCNA_00136 at 146.476 kb on - strand, within CCNA_00136 at 146.521 kb on + strand, within CCNA_00136 at 146.618 kb on + strand, within CCNA_00136 at 146.636 kb on + strand, within CCNA_00136 at 146.650 kb on - strand, within CCNA_00136 at 146.740 kb on - strand, within CCNA_00136 at 146.746 kb on + strand, within CCNA_00136 at 146.790 kb on + strand at 146.811 kb on + strand at 146.819 kb on - strand at 146.844 kb on + strand at 146.844 kb on + strand at 146.857 kb on + strand at 146.876 kb on + strand at 146.876 kb on + strand at 146.879 kb on - strand at 146.913 kb on - strand at 146.913 kb on - strand at 146.956 kb on - strand at 146.977 kb on + strand at 146.989 kb on + strand at 147.023 kb on - strand at 147.067 kb on + strand at 147.097 kb on - strand at 147.184 kb on - strand, within CCNA_00137 at 147.185 kb on + strand, within CCNA_00137 at 147.185 kb on + strand, within CCNA_00137 at 147.217 kb on - strand, within CCNA_00137 at 147.264 kb on - strand, within CCNA_00137 at 147.275 kb on - strand, within CCNA_00137 at 147.289 kb on - strand, within CCNA_00137 at 147.289 kb on - strand, within CCNA_00137 at 147.289 kb on - strand, within CCNA_00137 at 147.294 kb on - strand, within CCNA_00137 at 147.354 kb on - strand, within CCNA_00137 at 147.370 kb on + strand, within CCNA_00137 at 147.370 kb on + strand, within CCNA_00137 at 147.448 kb on - strand, within CCNA_00137 at 147.461 kb on + strand, within CCNA_00137 at 147.514 kb on - strand, within CCNA_00137 at 147.564 kb on + strand, within CCNA_00137 at 147.564 kb on + strand, within CCNA_00137 at 147.572 kb on - strand, within CCNA_00137 at 147.572 kb on - strand, within CCNA_00137 at 147.572 kb on - strand, within CCNA_00137 at 147.572 kb on - strand, within CCNA_00137 at 147.572 kb on - strand, within CCNA_00137 at 147.582 kb on + strand, within CCNA_00137 at 147.609 kb on + strand, within CCNA_00137 at 147.619 kb on + strand, within CCNA_00137 at 147.681 kb on - strand, within CCNA_00137 at 147.681 kb on - strand, within CCNA_00137 at 147.681 kb on - strand, within CCNA_00137 at 147.771 kb on - strand, within CCNA_00137 at 147.842 kb on + strand, within CCNA_00137 at 147.842 kb on + strand, within CCNA_00137 at 147.850 kb on - strand, within CCNA_00137 at 147.930 kb on - strand, within CCNA_00137 at 147.933 kb on + strand, within CCNA_00137 at 147.936 kb on - strand, within CCNA_00137 at 147.936 kb on - strand, within CCNA_00137 at 147.936 kb on - strand, within CCNA_00137 at 147.936 kb on - strand, within CCNA_00137 at 147.948 kb on + strand, within CCNA_00137 at 147.954 kb on - strand, within CCNA_00137 at 147.970 kb on + strand, within CCNA_00137 at 147.978 kb on - strand, within CCNA_00137 at 148.013 kb on - strand, within CCNA_00137 at 148.088 kb on + strand, within CCNA_00137 at 148.113 kb on - strand, within CCNA_00137 at 148.115 kb on - strand, within CCNA_00137 at 148.126 kb on + strand, within CCNA_00137 at 148.198 kb on + strand, within CCNA_00137 at 148.198 kb on - strand, within CCNA_00137 at 148.231 kb on + strand, within CCNA_00137 at 148.279 kb on - strand, within CCNA_00137 at 148.308 kb on + strand, within CCNA_00137 at 148.328 kb on + strand, within CCNA_00137 at 148.328 kb on + strand, within CCNA_00137 at 148.336 kb on - strand, within CCNA_00137 at 148.347 kb on + strand, within CCNA_00137 at 148.358 kb on + strand, within CCNA_00137 at 148.385 kb on - strand at 148.394 kb on + strand at 148.402 kb on - strand at 148.402 kb on - strand at 148.429 kb on + strand at 148.441 kb on + strand at 148.441 kb on + strand at 148.441 kb on + strand at 148.441 kb on + strand at 148.441 kb on + strand at 148.449 kb on - strand at 148.449 kb on - strand at 148.449 kb on - strand at 148.449 kb on - strand at 148.449 kb on - strand at 148.449 kb on - strand at 148.473 kb on - strand at 148.473 kb on - strand at 148.509 kb on + strand at 148.519 kb on + strand at 148.539 kb on - strand at 148.547 kb on - strand at 148.566 kb on + strand at 148.566 kb on + strand at 148.566 kb on + strand at 148.566 kb on + strand at 148.566 kb on + strand at 148.566 kb on + strand at 148.566 kb on + strand at 148.574 kb on - strand at 148.574 kb on - strand at 148.574 kb on - strand at 148.575 kb on + strand at 148.575 kb on + strand at 148.583 kb on - strand at 148.583 kb on - strand at 148.594 kb on + strand at 148.602 kb on - strand at 148.602 kb on - strand at 148.602 kb on - strand at 148.615 kb on - strand at 148.617 kb on + strand at 148.675 kb on + strand at 148.733 kb on + strand at 148.736 kb on - strand at 148.738 kb on + strand at 148.738 kb on + strand at 148.738 kb on + strand at 148.738 kb on + strand at 148.741 kb on - strand at 148.746 kb on - strand at 148.746 kb on - strand at 148.746 kb on - strand at 148.746 kb on - strand at 148.746 kb on - strand at 148.746 kb on - strand at 148.746 kb on - strand at 148.752 kb on - strand at 148.758 kb on + strand at 148.776 kb on - strand at 148.814 kb on + strand at 148.823 kb on - strand at 148.823 kb on - strand at 148.881 kb on + strand at 148.902 kb on + strand at 148.960 kb on + strand at 148.968 kb on - strand at 149.009 kb on - strand, within CCNA_00138 at 149.043 kb on + strand, within CCNA_00138 at 149.044 kb on + strand, within CCNA_00138 at 149.044 kb on + strand, within CCNA_00138 at 149.044 kb on + strand, within CCNA_00138 at 149.044 kb on + strand, within CCNA_00138 at 149.050 kb on - strand, within CCNA_00138 at 149.052 kb on - strand, within CCNA_00138 at 149.119 kb on - strand, within CCNA_00138 at 149.126 kb on + strand, within CCNA_00138 at 149.130 kb on - strand, within CCNA_00138 at 149.134 kb on + strand, within CCNA_00138 at 149.135 kb on - strand, within CCNA_00138 at 149.159 kb on - strand, within CCNA_00138 at 149.202 kb on + strand, within CCNA_00138 at 149.210 kb on - strand, within CCNA_00138 at 149.225 kb on - strand, within CCNA_00138 at 149.225 kb on - strand, within CCNA_00138 at 149.230 kb on - strand, within CCNA_00138 at 149.232 kb on + strand, within CCNA_00138 at 149.234 kb on + strand, within CCNA_00138 at 149.240 kb on - strand, within CCNA_00138 at 149.303 kb on + strand, within CCNA_00138 at 149.303 kb on + strand, within CCNA_00138 at 149.364 kb on - strand, within CCNA_00138 at 149.402 kb on - strand, within CCNA_00138 at 149.447 kb on + strand, within CCNA_00138 at 149.447 kb on + strand, within CCNA_00138 at 149.448 kb on - strand, within CCNA_00138 at 149.458 kb on + strand, within CCNA_00138 at 149.466 kb on - strand, within CCNA_00138 at 149.466 kb on - strand, within CCNA_00138 at 149.514 kb on + strand, within CCNA_00138 at 149.522 kb on - strand, within CCNA_00138
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL remove 146,051 - CCNA_00136 0.46 +0.0 146,077 + CCNA_00136 0.48 -0.3 146,106 - CCNA_00136 0.50 -0.1 146,132 + CCNA_00136 0.51 -0.1 146,132 + CCNA_00136 0.51 +0.1 146,132 + CCNA_00136 0.51 -0.6 146,140 - CCNA_00136 0.52 +0.1 146,143 + CCNA_00136 0.52 +0.1 146,151 - CCNA_00136 0.52 -0.2 146,165 + CCNA_00136 0.53 -0.4 146,173 - CCNA_00136 0.54 +0.5 146,178 + CCNA_00136 0.54 +0.2 146,196 + CCNA_00136 0.55 -1.2 146,196 + CCNA_00136 0.55 -0.6 146,196 + CCNA_00136 0.55 +1.2 146,196 + CCNA_00136 0.55 +0.8 146,204 - CCNA_00136 0.55 -0.7 146,204 - CCNA_00136 0.55 +0.3 146,301 + CCNA_00136 0.61 -1.6 146,319 - CCNA_00136 0.62 +1.7 146,321 - CCNA_00136 0.62 +0.4 146,330 + CCNA_00136 0.63 +0.8 146,338 - CCNA_00136 0.63 +1.9 146,357 + CCNA_00136 0.65 +1.1 146,357 + CCNA_00136 0.65 +0.6 146,378 + CCNA_00136 0.66 -0.4 146,378 + CCNA_00136 0.66 +0.1 146,378 + CCNA_00136 0.66 -2.0 146,383 + CCNA_00136 0.66 -1.5 146,386 - CCNA_00136 0.66 +0.1 146,386 - CCNA_00136 0.66 -0.2 146,396 - CCNA_00136 0.67 -0.2 146,396 - CCNA_00136 0.67 -0.2 146,408 + CCNA_00136 0.68 +0.1 146,421 + CCNA_00136 0.68 -1.5 146,445 - CCNA_00136 0.70 -0.1 146,462 - CCNA_00136 0.71 +0.3 146,476 - CCNA_00136 0.72 -0.7 146,521 + CCNA_00136 0.74 +1.0 146,618 + CCNA_00136 0.80 -0.3 146,636 + CCNA_00136 0.81 -1.0 146,650 - CCNA_00136 0.82 +0.1 146,740 - CCNA_00136 0.87 -0.9 146,746 + CCNA_00136 0.88 -0.6 146,790 + +0.2 146,811 + +0.5 146,819 - +0.1 146,844 + +0.2 146,844 + +0.1 146,857 + -0.0 146,876 + +1.3 146,876 + -0.8 146,879 - +0.8 146,913 - -0.7 146,913 - +1.4 146,956 - -0.2 146,977 + +1.3 146,989 + +0.1 147,023 - +0.2 147,067 + +0.2 147,097 - -1.2 147,184 - CCNA_00137 0.13 -1.4 147,185 + CCNA_00137 0.13 -0.5 147,185 + CCNA_00137 0.13 -0.7 147,217 - CCNA_00137 0.15 -0.5 147,264 - CCNA_00137 0.18 -1.7 147,275 - CCNA_00137 0.19 -1.3 147,289 - CCNA_00137 0.20 -0.2 147,289 - CCNA_00137 0.20 +0.5 147,289 - CCNA_00137 0.20 -0.4 147,294 - CCNA_00137 0.20 -0.9 147,354 - CCNA_00137 0.24 -1.3 147,370 + CCNA_00137 0.25 +0.3 147,370 + CCNA_00137 0.25 -2.1 147,448 - CCNA_00137 0.30 +0.2 147,461 + CCNA_00137 0.31 -0.9 147,514 - CCNA_00137 0.34 -0.2 147,564 + CCNA_00137 0.37 -1.0 147,564 + CCNA_00137 0.37 -0.7 147,572 - CCNA_00137 0.38 -0.7 147,572 - CCNA_00137 0.38 +0.2 147,572 - CCNA_00137 0.38 -0.4 147,572 - CCNA_00137 0.38 -0.4 147,572 - CCNA_00137 0.38 -0.9 147,582 + CCNA_00137 0.39 -2.0 147,609 + CCNA_00137 0.40 -1.3 147,619 + CCNA_00137 0.41 -1.3 147,681 - CCNA_00137 0.45 -0.3 147,681 - CCNA_00137 0.45 -0.3 147,681 - CCNA_00137 0.45 -1.9 147,771 - CCNA_00137 0.51 -0.2 147,842 + CCNA_00137 0.55 +0.3 147,842 + CCNA_00137 0.55 -1.4 147,850 - CCNA_00137 0.56 -1.2 147,930 - CCNA_00137 0.61 -0.1 147,933 + CCNA_00137 0.61 +2.3 147,936 - CCNA_00137 0.61 -0.3 147,936 - CCNA_00137 0.61 -0.4 147,936 - CCNA_00137 0.61 -0.5 147,936 - CCNA_00137 0.61 -0.3 147,948 + CCNA_00137 0.62 -0.5 147,954 - CCNA_00137 0.63 -0.7 147,970 + CCNA_00137 0.64 -1.4 147,978 - CCNA_00137 0.64 -0.5 148,013 - CCNA_00137 0.66 +0.1 148,088 + CCNA_00137 0.71 +1.1 148,113 - CCNA_00137 0.73 -0.9 148,115 - CCNA_00137 0.73 -0.6 148,126 + CCNA_00137 0.74 -0.4 148,198 + CCNA_00137 0.78 -1.5 148,198 - CCNA_00137 0.78 -0.4 148,231 + CCNA_00137 0.81 -2.2 148,279 - CCNA_00137 0.84 -0.1 148,308 + CCNA_00137 0.86 -0.5 148,328 + CCNA_00137 0.87 +1.1 148,328 + CCNA_00137 0.87 -1.2 148,336 - CCNA_00137 0.87 -1.2 148,347 + CCNA_00137 0.88 +0.2 148,358 + CCNA_00137 0.89 -0.4 148,385 - -1.0 148,394 + -0.3 148,402 - +0.1 148,402 - +0.7 148,429 + -0.7 148,441 + -0.5 148,441 + -0.6 148,441 + -0.1 148,441 + -1.2 148,441 + -0.2 148,449 - -1.0 148,449 - +1.1 148,449 - -0.3 148,449 - +0.2 148,449 - -1.1 148,449 - -0.7 148,473 - -0.5 148,473 - -0.3 148,509 + -1.0 148,519 + -1.3 148,539 - -0.4 148,547 - +0.1 148,566 + +0.3 148,566 + -0.1 148,566 + -0.6 148,566 + -0.4 148,566 + -0.3 148,566 + +0.1 148,566 + +0.1 148,574 - +2.9 148,574 - -0.5 148,574 - -1.8 148,575 + +0.3 148,575 + -0.3 148,583 - +0.5 148,583 - +0.1 148,594 + +0.2 148,602 - +1.3 148,602 - -0.9 148,602 - -0.0 148,615 - -0.3 148,617 + -0.8 148,675 + -0.1 148,733 + +0.6 148,736 - +0.1 148,738 + +0.5 148,738 + +0.2 148,738 + +0.1 148,738 + +0.2 148,741 - +0.3 148,746 - -0.1 148,746 - +0.3 148,746 - -1.3 148,746 - -0.1 148,746 - -0.1 148,746 - +0.0 148,746 - -0.6 148,752 - +1.7 148,758 + +0.4 148,776 - -0.5 148,814 + +0.5 148,823 - -0.1 148,823 - -0.5 148,881 + +0.1 148,902 + +0.6 148,960 + +0.2 148,968 - +2.2 149,009 - CCNA_00138 0.12 +1.1 149,043 + CCNA_00138 0.13 +0.2 149,044 + CCNA_00138 0.13 +0.4 149,044 + CCNA_00138 0.13 +0.6 149,044 + CCNA_00138 0.13 +0.4 149,044 + CCNA_00138 0.13 -0.2 149,050 - CCNA_00138 0.14 -0.8 149,052 - CCNA_00138 0.14 -0.4 149,119 - CCNA_00138 0.17 +0.3 149,126 + CCNA_00138 0.17 +0.4 149,130 - CCNA_00138 0.17 -1.3 149,134 + CCNA_00138 0.17 +0.4 149,135 - CCNA_00138 0.17 -1.7 149,159 - CCNA_00138 0.19 +0.0 149,202 + CCNA_00138 0.21 +0.4 149,210 - CCNA_00138 0.21 -0.5 149,225 - CCNA_00138 0.22 +0.6 149,225 - CCNA_00138 0.22 -0.2 149,230 - CCNA_00138 0.22 +0.4 149,232 + CCNA_00138 0.22 +0.2 149,234 + CCNA_00138 0.22 +0.7 149,240 - CCNA_00138 0.22 -0.1 149,303 + CCNA_00138 0.25 +0.3 149,303 + CCNA_00138 0.25 -0.0 149,364 - CCNA_00138 0.28 +0.2 149,402 - CCNA_00138 0.30 -1.3 149,447 + CCNA_00138 0.32 +0.2 149,447 + CCNA_00138 0.32 +0.4 149,448 - CCNA_00138 0.32 -0.8 149,458 + CCNA_00138 0.32 -0.3 149,466 - CCNA_00138 0.33 -0.5 149,466 - CCNA_00138 0.33 -0.1 149,514 + CCNA_00138 0.35 -0.3 149,522 - CCNA_00138 0.35 +0.3
Or see this region's nucleotide sequence