Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00080

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00078 and CCNA_00079 are separated by 87 nucleotidesCCNA_00079 and CCNA_00080 are separated by 193 nucleotidesCCNA_00080 and CCNA_00081 are separated by 34 nucleotidesCCNA_00081 and CCNA_00082 are separated by 249 nucleotides CCNA_00078: CCNA_00078 - acyl-CoA dehydrogenase, at 81,533 to 83,326 _00078 CCNA_00079: CCNA_00079 - MerR-family transcriptional regulator, at 83,414 to 83,893 _00079 CCNA_00080: CCNA_00080 - LexA-related transcriptional repressor, at 84,087 to 84,728 _00080 CCNA_00081: CCNA_00081 - hypothetical protein, at 84,763 to 84,972 _00081 CCNA_00082: CCNA_00082 - class 1 lysyl-tRNA synthetase, at 85,222 to 86,880 _00082 Position (kb) 84 85Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 83.087 kb on + strand, within CCNA_00078at 83.087 kb on + strand, within CCNA_00078at 83.122 kb on - strand, within CCNA_00078at 83.165 kb on - strandat 83.165 kb on - strandat 83.165 kb on - strandat 83.181 kb on + strandat 83.199 kb on + strandat 83.220 kb on + strandat 83.222 kb on + strandat 83.287 kb on + strandat 83.287 kb on + strandat 83.290 kb on - strandat 83.295 kb on - strandat 83.295 kb on - strandat 83.322 kb on - strandat 83.322 kb on - strandat 83.333 kb on + strandat 83.333 kb on + strandat 83.333 kb on + strandat 83.338 kb on + strandat 83.340 kb on - strandat 83.341 kb on - strandat 83.341 kb on - strandat 83.459 kb on + strandat 83.494 kb on - strand, within CCNA_00079at 83.494 kb on - strand, within CCNA_00079at 83.537 kb on + strand, within CCNA_00079at 83.538 kb on + strand, within CCNA_00079at 83.630 kb on + strand, within CCNA_00079at 83.645 kb on + strand, within CCNA_00079at 83.739 kb on + strand, within CCNA_00079at 83.768 kb on - strand, within CCNA_00079at 83.781 kb on + strand, within CCNA_00079at 83.783 kb on + strand, within CCNA_00079at 83.838 kb on + strand, within CCNA_00079at 83.968 kb on - strandat 84.196 kb on + strand, within CCNA_00080at 84.196 kb on + strand, within CCNA_00080at 84.453 kb on - strand, within CCNA_00080at 84.458 kb on - strand, within CCNA_00080at 84.541 kb on + strand, within CCNA_00080at 84.551 kb on + strand, within CCNA_00080at 84.559 kb on - strand, within CCNA_00080at 84.594 kb on + strand, within CCNA_00080at 84.602 kb on - strand, within CCNA_00080at 84.653 kb on - strand, within CCNA_00080at 84.751 kb on + strandat 84.753 kb on - strandat 84.758 kb on - strandat 84.758 kb on - strandat 84.766 kb on + strandat 84.769 kb on - strandat 84.782 kb on - strandat 84.795 kb on + strand, within CCNA_00081at 84.830 kb on + strand, within CCNA_00081at 84.835 kb on + strand, within CCNA_00081at 84.838 kb on - strand, within CCNA_00081at 84.838 kb on - strand, within CCNA_00081at 84.876 kb on - strand, within CCNA_00081at 84.886 kb on - strand, within CCNA_00081at 84.886 kb on - strand, within CCNA_00081at 84.886 kb on - strand, within CCNA_00081at 84.886 kb on - strand, within CCNA_00081at 84.909 kb on - strand, within CCNA_00081at 84.911 kb on - strand, within CCNA_00081at 84.928 kb on + strand, within CCNA_00081at 84.957 kb on + strandat 84.957 kb on + strandat 84.957 kb on + strandat 84.965 kb on - strandat 84.965 kb on - strandat 84.965 kb on - strandat 84.969 kb on - strandat 84.969 kb on - strandat 84.974 kb on + strandat 84.977 kb on - strandat 84.982 kb on - strandat 84.982 kb on - strandat 84.991 kb on - strandat 85.009 kb on + strandat 85.014 kb on + strandat 85.022 kb on - strandat 85.038 kb on - strandat 85.040 kb on + strandat 85.040 kb on + strandat 85.062 kb on + strandat 85.081 kb on + strandat 85.085 kb on + strandat 85.091 kb on - strandat 85.125 kb on + strandat 85.125 kb on + strandat 85.133 kb on - strandat 85.158 kb on - strandat 85.161 kb on - strandat 85.174 kb on + strandat 85.206 kb on + strandat 85.214 kb on - strandat 85.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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83,087 + CCNA_00078 0.87 -1.4
83,087 + CCNA_00078 0.87 +0.0
83,122 - CCNA_00078 0.89 +1.4
83,165 - +0.7
83,165 - +0.0
83,165 - +0.5
83,181 + -0.0
83,199 + +0.7
83,220 + -0.5
83,222 + +0.7
83,287 + +0.3
83,287 + +0.8
83,290 - +1.0
83,295 - +1.7
83,295 - +0.3
83,322 - +0.3
83,322 - +0.3
83,333 + -0.3
83,333 + +0.3
83,333 + -0.3
83,338 + +0.7
83,340 - -0.6
83,341 - +0.7
83,341 - +0.5
83,459 + +0.1
83,494 - CCNA_00079 0.17 +1.1
83,494 - CCNA_00079 0.17 +0.4
83,537 + CCNA_00079 0.26 -0.6
83,538 + CCNA_00079 0.26 +1.2
83,630 + CCNA_00079 0.45 +0.7
83,645 + CCNA_00079 0.48 -0.7
83,739 + CCNA_00079 0.68 -0.7
83,768 - CCNA_00079 0.74 -0.3
83,781 + CCNA_00079 0.76 -1.7
83,783 + CCNA_00079 0.77 -0.6
83,838 + CCNA_00079 0.88 -2.3
83,968 - +0.5
84,196 + CCNA_00080 0.17 +2.4
84,196 + CCNA_00080 0.17 -1.6
84,453 - CCNA_00080 0.57 +0.3
84,458 - CCNA_00080 0.58 +0.3
84,541 + CCNA_00080 0.71 +0.8
84,551 + CCNA_00080 0.72 -0.1
84,559 - CCNA_00080 0.74 -0.4
84,594 + CCNA_00080 0.79 -0.5
84,602 - CCNA_00080 0.80 -0.5
84,653 - CCNA_00080 0.88 +1.4
84,751 + -1.2
84,753 - +0.4
84,758 - +0.4
84,758 - +0.3
84,766 + +0.8
84,769 - +0.1
84,782 - +0.0
84,795 + CCNA_00081 0.15 -0.2
84,830 + CCNA_00081 0.32 +0.4
84,835 + CCNA_00081 0.34 +0.1
84,838 - CCNA_00081 0.36 +0.4
84,838 - CCNA_00081 0.36 -1.4
84,876 - CCNA_00081 0.54 +0.0
84,886 - CCNA_00081 0.59 +0.2
84,886 - CCNA_00081 0.59 +1.4
84,886 - CCNA_00081 0.59 -0.1
84,886 - CCNA_00081 0.59 +0.1
84,909 - CCNA_00081 0.70 +0.2
84,911 - CCNA_00081 0.70 -0.2
84,928 + CCNA_00081 0.79 +0.4
84,957 + +0.1
84,957 + -0.3
84,957 + +0.7
84,965 - -3.3
84,965 - +0.0
84,965 - -0.2
84,969 - -0.6
84,969 - +1.3
84,974 + -0.0
84,977 - +1.3
84,982 - -0.2
84,982 - +0.4
84,991 - -0.1
85,009 + +0.0
85,014 + +0.0
85,022 - +1.3
85,038 - -0.1
85,040 + -0.2
85,040 + -0.2
85,062 + +0.4
85,081 + -1.6
85,085 + -0.7
85,091 - -0.1
85,125 + -0.1
85,125 + -1.0
85,133 - +0.4
85,158 - -0.2
85,161 - +0.9
85,174 + -0.1
85,206 + +0.2
85,214 - +0.1
85,252 + +0.1

Or see this region's nucleotide sequence