Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00001

Experiment: PYE with CHIR-090 40 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00001 and CCNA_00002 overlap by 4 nucleotidesCCNA_00002 and CCNA_00003 overlap by 4 nucleotides CCNA_00001: CCNA_00001 - ATP/GTP-binding protein, at 202 to 1,107 _00001 CCNA_00002: CCNA_00002 - septum formation protein Maf, at 1,104 to 1,703 _00002 CCNA_00003: CCNA_00003 - shikimate 5-dehydrogenase, at 1,700 to 2,557 _00003 Position (kb) 0 1 2Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 0.032 kb on + strandat 0.239 kb on + strandat 0.242 kb on - strandat 0.247 kb on - strandat 0.247 kb on - strandat 0.257 kb on - strandat 0.258 kb on - strandat 0.265 kb on - strandat 0.276 kb on - strandat 0.312 kb on + strand, within CCNA_00001at 0.322 kb on - strand, within CCNA_00001at 0.382 kb on + strand, within CCNA_00001at 0.387 kb on + strand, within CCNA_00001at 0.387 kb on + strand, within CCNA_00001at 0.389 kb on + strand, within CCNA_00001at 0.397 kb on - strand, within CCNA_00001at 0.399 kb on + strand, within CCNA_00001at 0.400 kb on - strand, within CCNA_00001at 0.436 kb on - strand, within CCNA_00001at 0.468 kb on - strand, within CCNA_00001at 0.496 kb on + strand, within CCNA_00001at 0.505 kb on - strand, within CCNA_00001at 0.512 kb on + strand, within CCNA_00001at 0.607 kb on + strand, within CCNA_00001at 0.627 kb on + strand, within CCNA_00001at 0.649 kb on + strand, within CCNA_00001at 0.649 kb on + strand, within CCNA_00001at 0.649 kb on + strand, within CCNA_00001at 0.649 kb on + strand, within CCNA_00001at 0.650 kb on + strand, within CCNA_00001at 0.654 kb on + strand, within CCNA_00001at 0.657 kb on - strand, within CCNA_00001at 0.657 kb on - strand, within CCNA_00001at 0.663 kb on - strand, within CCNA_00001at 0.687 kb on - strand, within CCNA_00001at 0.688 kb on + strand, within CCNA_00001at 0.694 kb on + strand, within CCNA_00001at 0.701 kb on - strand, within CCNA_00001at 0.702 kb on - strand, within CCNA_00001at 0.702 kb on - strand, within CCNA_00001at 0.712 kb on - strand, within CCNA_00001at 0.718 kb on - strand, within CCNA_00001at 0.755 kb on + strand, within CCNA_00001at 0.802 kb on + strand, within CCNA_00001at 0.821 kb on + strand, within CCNA_00001at 0.821 kb on + strand, within CCNA_00001at 0.821 kb on + strand, within CCNA_00001at 0.821 kb on + strand, within CCNA_00001at 0.829 kb on - strand, within CCNA_00001at 0.829 kb on - strand, within CCNA_00001at 0.829 kb on - strand, within CCNA_00001at 0.867 kb on - strand, within CCNA_00001at 0.886 kb on + strand, within CCNA_00001at 0.912 kb on - strand, within CCNA_00001at 0.974 kb on - strand, within CCNA_00001at 0.998 kb on - strand, within CCNA_00001at 1.020 kb on + strandat 1.036 kb on + strandat 1.036 kb on + strandat 1.059 kb on + strandat 1.073 kb on + strandat 1.083 kb on + strandat 1.083 kb on + strandat 1.083 kb on + strandat 1.083 kb on + strandat 1.091 kb on - strandat 1.096 kb on + strandat 1.096 kb on + strandat 1.104 kb on - strandat 1.104 kb on - strandat 1.106 kb on - strandat 1.107 kb on + strandat 1.107 kb on + strandat 1.109 kb on + strandat 1.114 kb on + strandat 1.116 kb on - strandat 1.117 kb on - strandat 1.131 kb on + strandat 1.131 kb on + strandat 1.155 kb on + strandat 1.155 kb on + strandat 1.163 kb on - strandat 1.163 kb on - strandat 1.195 kb on - strand, within CCNA_00002at 1.200 kb on - strand, within CCNA_00002at 1.223 kb on - strand, within CCNA_00002at 1.277 kb on + strand, within CCNA_00002at 1.292 kb on + strand, within CCNA_00002at 1.293 kb on + strand, within CCNA_00002at 1.300 kb on - strand, within CCNA_00002at 1.314 kb on - strand, within CCNA_00002at 1.319 kb on + strand, within CCNA_00002at 1.324 kb on + strand, within CCNA_00002at 1.329 kb on + strand, within CCNA_00002at 1.332 kb on - strand, within CCNA_00002at 1.332 kb on - strand, within CCNA_00002at 1.337 kb on - strand, within CCNA_00002at 1.337 kb on - strand, within CCNA_00002at 1.337 kb on - strand, within CCNA_00002at 1.343 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.399 kb on + strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.407 kb on - strand, within CCNA_00002at 1.409 kb on + strand, within CCNA_00002at 1.409 kb on + strand, within CCNA_00002at 1.417 kb on - strand, within CCNA_00002at 1.422 kb on - strand, within CCNA_00002at 1.517 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.531 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.534 kb on + strand, within CCNA_00002at 1.537 kb on - strand, within CCNA_00002at 1.539 kb on - strand, within CCNA_00002at 1.539 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.542 kb on - strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.554 kb on + strand, within CCNA_00002at 1.557 kb on - strand, within CCNA_00002at 1.559 kb on + strand, within CCNA_00002at 1.559 kb on + strand, within CCNA_00002at 1.559 kb on + strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.562 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.567 kb on - strand, within CCNA_00002at 1.589 kb on + strand, within CCNA_00002at 1.589 kb on - strand, within CCNA_00002at 1.589 kb on - strand, within CCNA_00002at 1.589 kb on - strand, within CCNA_00002at 1.597 kb on - strand, within CCNA_00002at 1.616 kb on + strand, within CCNA_00002at 1.645 kb on + strandat 1.646 kb on - strandat 1.650 kb on + strandat 1.663 kb on - strandat 1.664 kb on + strandat 1.687 kb on - strandat 1.689 kb on + strandat 1.689 kb on + strandat 1.697 kb on - strandat 1.697 kb on - strandat 1.697 kb on - strandat 1.704 kb on - strandat 1.743 kb on + strandat 1.785 kb on - strandat 1.786 kb on + strand, within CCNA_00003at 1.814 kb on - strand, within CCNA_00003at 1.849 kb on + strand, within CCNA_00003at 1.849 kb on + strand, within CCNA_00003at 1.857 kb on - strand, within CCNA_00003at 1.858 kb on - strand, within CCNA_00003at 1.893 kb on + strand, within CCNA_00003at 2.036 kb on + strand, within CCNA_00003at 2.098 kb on - strand, within CCNA_00003

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 40 ug/mL
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32 + +1.1
239 + -0.2
242 - -1.5
247 - -0.9
247 - -0.1
257 - +1.3
258 - -1.7
265 - +0.3
276 - -0.4
312 + CCNA_00001 0.12 -0.8
322 - CCNA_00001 0.13 -0.0
382 + CCNA_00001 0.20 +0.7
387 + CCNA_00001 0.20 -0.9
387 + CCNA_00001 0.20 -0.6
389 + CCNA_00001 0.21 +1.7
397 - CCNA_00001 0.22 -1.2
399 + CCNA_00001 0.22 -0.4
400 - CCNA_00001 0.22 +0.3
436 - CCNA_00001 0.26 -0.1
468 - CCNA_00001 0.29 -0.6
496 + CCNA_00001 0.32 -0.7
505 - CCNA_00001 0.33 -1.3
512 + CCNA_00001 0.34 +1.7
607 + CCNA_00001 0.45 -2.0
627 + CCNA_00001 0.47 -0.8
649 + CCNA_00001 0.49 -3.7
649 + CCNA_00001 0.49 -2.1
649 + CCNA_00001 0.49 -1.0
649 + CCNA_00001 0.49 -1.1
650 + CCNA_00001 0.49 +0.0
654 + CCNA_00001 0.50 -1.8
657 - CCNA_00001 0.50 -0.9
657 - CCNA_00001 0.50 -1.9
663 - CCNA_00001 0.51 -0.5
687 - CCNA_00001 0.54 -0.3
688 + CCNA_00001 0.54 -0.8
694 + CCNA_00001 0.54 -1.0
701 - CCNA_00001 0.55 +0.3
702 - CCNA_00001 0.55 +0.8
702 - CCNA_00001 0.55 +0.1
712 - CCNA_00001 0.56 +0.2
718 - CCNA_00001 0.57 +0.1
755 + CCNA_00001 0.61 -1.1
802 + CCNA_00001 0.66 +0.3
821 + CCNA_00001 0.68 -2.2
821 + CCNA_00001 0.68 -0.7
821 + CCNA_00001 0.68 -2.1
821 + CCNA_00001 0.68 -1.4
829 - CCNA_00001 0.69 -0.5
829 - CCNA_00001 0.69 -0.2
829 - CCNA_00001 0.69 -0.1
867 - CCNA_00001 0.73 -0.8
886 + CCNA_00001 0.75 -0.1
912 - CCNA_00001 0.78 -1.2
974 - CCNA_00001 0.85 -0.1
998 - CCNA_00001 0.88 +2.3
1,020 + -3.0
1,036 + -1.1
1,036 + -1.7
1,059 + -0.5
1,073 + +1.7
1,083 + +0.3
1,083 + +0.1
1,083 + +0.7
1,083 + -2.4
1,091 - +1.1
1,096 + +0.4
1,096 + +0.5
1,104 - +0.3
1,104 - -0.3
1,106 - -0.2
1,107 + -0.5
1,107 + +0.2
1,109 + +0.2
1,114 + +0.1
1,116 - +0.1
1,117 - -1.1
1,131 + +1.1
1,131 + -0.3
1,155 + +0.0
1,155 + +0.5
1,163 - -0.5
1,163 - -0.3
1,195 - CCNA_00002 0.15 -0.2
1,200 - CCNA_00002 0.16 +0.2
1,223 - CCNA_00002 0.20 -0.9
1,277 + CCNA_00002 0.29 +0.7
1,292 + CCNA_00002 0.31 +0.1
1,293 + CCNA_00002 0.32 +0.3
1,300 - CCNA_00002 0.33 -0.3
1,314 - CCNA_00002 0.35 -0.2
1,319 + CCNA_00002 0.36 +0.4
1,324 + CCNA_00002 0.37 +0.5
1,329 + CCNA_00002 0.38 +0.2
1,332 - CCNA_00002 0.38 -0.1
1,332 - CCNA_00002 0.38 -0.4
1,337 - CCNA_00002 0.39 +0.1
1,337 - CCNA_00002 0.39 +0.5
1,337 - CCNA_00002 0.39 -0.5
1,343 + CCNA_00002 0.40 -2.2
1,399 + CCNA_00002 0.49 -0.4
1,399 + CCNA_00002 0.49 +0.2
1,399 + CCNA_00002 0.49 +0.8
1,399 + CCNA_00002 0.49 +0.4
1,399 + CCNA_00002 0.49 -0.4
1,407 - CCNA_00002 0.51 -0.1
1,407 - CCNA_00002 0.51 -0.3
1,407 - CCNA_00002 0.51 +0.1
1,407 - CCNA_00002 0.51 +0.0
1,407 - CCNA_00002 0.51 -0.3
1,407 - CCNA_00002 0.51 -0.1
1,407 - CCNA_00002 0.51 -0.3
1,409 + CCNA_00002 0.51 +0.2
1,409 + CCNA_00002 0.51 +0.5
1,417 - CCNA_00002 0.52 +0.4
1,422 - CCNA_00002 0.53 +0.2
1,517 + CCNA_00002 0.69 +0.0
1,531 + CCNA_00002 0.71 +0.5
1,531 + CCNA_00002 0.71 -0.5
1,531 + CCNA_00002 0.71 -0.5
1,534 + CCNA_00002 0.72 -0.0
1,534 + CCNA_00002 0.72 +0.5
1,534 + CCNA_00002 0.72 +0.4
1,537 - CCNA_00002 0.72 -1.7
1,539 - CCNA_00002 0.72 +0.5
1,539 - CCNA_00002 0.72 -2.4
1,542 - CCNA_00002 0.73 +0.4
1,542 - CCNA_00002 0.73 +1.2
1,542 - CCNA_00002 0.73 +0.3
1,554 + CCNA_00002 0.75 -0.1
1,554 + CCNA_00002 0.75 +0.8
1,554 + CCNA_00002 0.75 +0.4
1,554 + CCNA_00002 0.75 -0.2
1,554 + CCNA_00002 0.75 +0.2
1,554 + CCNA_00002 0.75 +0.5
1,554 + CCNA_00002 0.75 -0.3
1,554 + CCNA_00002 0.75 -0.6
1,557 - CCNA_00002 0.76 +0.1
1,559 + CCNA_00002 0.76 +0.2
1,559 + CCNA_00002 0.76 +0.4
1,559 + CCNA_00002 0.76 +0.3
1,562 - CCNA_00002 0.76 -0.2
1,562 - CCNA_00002 0.76 +0.2
1,562 - CCNA_00002 0.76 -0.6
1,562 - CCNA_00002 0.76 -1.3
1,562 - CCNA_00002 0.76 +0.3
1,567 - CCNA_00002 0.77 +1.6
1,567 - CCNA_00002 0.77 +1.1
1,567 - CCNA_00002 0.77 -0.0
1,567 - CCNA_00002 0.77 -2.0
1,567 - CCNA_00002 0.77 -1.0
1,589 + CCNA_00002 0.81 +0.3
1,589 - CCNA_00002 0.81 +0.4
1,589 - CCNA_00002 0.81 +0.4
1,589 - CCNA_00002 0.81 -0.1
1,597 - CCNA_00002 0.82 +0.6
1,616 + CCNA_00002 0.85 +1.4
1,645 + +0.1
1,646 - -0.9
1,650 + -0.4
1,663 - -0.7
1,664 + +0.0
1,687 - +0.4
1,689 + +0.3
1,689 + +0.3
1,697 - +0.2
1,697 - -1.0
1,697 - +0.2
1,704 - -0.1
1,743 + +0.2
1,785 - +0.5
1,786 + CCNA_00003 0.10 +0.3
1,814 - CCNA_00003 0.13 +0.9
1,849 + CCNA_00003 0.17 -0.2
1,849 + CCNA_00003 0.17 +0.3
1,857 - CCNA_00003 0.18 +0.2
1,858 - CCNA_00003 0.18 -0.3
1,893 + CCNA_00003 0.22 +0.1
2,036 + CCNA_00003 0.39 -1.0
2,098 - CCNA_00003 0.46 +0.1

Or see this region's nucleotide sequence