Strain Fitness in Agrobacterium fabrum C58 around Atu2748

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2746 and Atu2747 are separated by 60 nucleotidesAtu2747 and Atu2748 are separated by 189 nucleotidesAtu2748 and Atu2749 are separated by 46 nucleotidesAtu2749 and Atu2750 are separated by 11 nucleotides Atu2746: Atu2746 - hypothetical protein, at 2,744,507 to 2,745,193 Atu2746 Atu2747: Atu2747 - hypothetical protein, at 2,745,254 to 2,745,916 Atu2747 Atu2748: Atu2748 - leucyl-tRNA synthetase, at 2,746,106 to 2,748,736 Atu2748 Atu2749: Atu2749 - hypothetical protein, at 2,748,783 to 2,749,274 Atu2749 Atu2750: Atu2750 - hypothetical protein, at 2,749,286 to 2,750,323 Atu2750 Position (kb) 2746 2747 2748 2749Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2745.115 kb on - strand, within Atu2746at 2745.496 kb on + strand, within Atu2747at 2745.504 kb on - strand, within Atu2747at 2745.517 kb on + strand, within Atu2747at 2745.528 kb on + strand, within Atu2747at 2745.528 kb on + strand, within Atu2747at 2745.536 kb on - strand, within Atu2747at 2745.536 kb on - strand, within Atu2747at 2745.624 kb on + strand, within Atu2747at 2745.632 kb on - strand, within Atu2747at 2745.677 kb on - strand, within Atu2747at 2745.720 kb on + strand, within Atu2747at 2745.725 kb on + strand, within Atu2747at 2745.783 kb on + strand, within Atu2747at 2745.793 kb on + strand, within Atu2747at 2745.795 kb on - strand, within Atu2747at 2745.807 kb on + strand, within Atu2747at 2745.807 kb on + strand, within Atu2747at 2745.807 kb on + strand, within Atu2747at 2745.815 kb on - strand, within Atu2747at 2745.815 kb on - strand, within Atu2747at 2745.875 kb on + strandat 2745.898 kb on - strandat 2745.932 kb on - strandat 2745.996 kb on - strandat 2746.002 kb on + strandat 2746.010 kb on - strandat 2746.010 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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2,745,115 - Atu2746 0.89 -1.1
2,745,496 + Atu2747 0.37 -4.4
2,745,504 - Atu2747 0.38 -4.6
2,745,517 + Atu2747 0.40 -6.0
2,745,528 + Atu2747 0.41 -5.2
2,745,528 + Atu2747 0.41 -3.9
2,745,536 - Atu2747 0.43 -2.8
2,745,536 - Atu2747 0.43 -3.7
2,745,624 + Atu2747 0.56 -4.8
2,745,632 - Atu2747 0.57 -5.9
2,745,677 - Atu2747 0.64 -4.7
2,745,720 + Atu2747 0.70 -2.7
2,745,725 + Atu2747 0.71 -4.2
2,745,783 + Atu2747 0.80 -2.6
2,745,793 + Atu2747 0.81 -4.3
2,745,795 - Atu2747 0.82 -0.7
2,745,807 + Atu2747 0.83 -4.1
2,745,807 + Atu2747 0.83 -3.7
2,745,807 + Atu2747 0.83 -3.4
2,745,815 - Atu2747 0.85 -2.2
2,745,815 - Atu2747 0.85 -4.9
2,745,875 + -2.7
2,745,898 - -4.6
2,745,932 - +0.1
2,745,996 - -0.1
2,746,002 + -0.6
2,746,010 - +0.9
2,746,010 - -0.0

Or see this region's nucleotide sequence