Strain Fitness in Agrobacterium fabrum C58 around Atu0664

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0663 and Atu0664 are separated by 165 nucleotidesAtu0664 and Atu0665 are separated by 111 nucleotides Atu0663: Atu0663 - hypothetical protein, at 657,753 to 659,027 Atu0663 Atu0664: Atu0664 - transcriptional regulator, LysR family, at 659,193 to 660,092 Atu0664 Atu0665: Atu0665 - glycolate oxidase subunit, at 660,204 to 661,637 Atu0665 Position (kb) 659 660 661Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 658.255 kb on + strand, within Atu0663at 658.279 kb on - strand, within Atu0663at 658.289 kb on + strand, within Atu0663at 658.307 kb on - strand, within Atu0663at 658.338 kb on + strand, within Atu0663at 658.362 kb on + strand, within Atu0663at 658.388 kb on - strand, within Atu0663at 658.522 kb on - strand, within Atu0663at 658.522 kb on - strand, within Atu0663at 658.560 kb on + strand, within Atu0663at 658.616 kb on - strand, within Atu0663at 658.616 kb on - strand, within Atu0663at 658.616 kb on - strand, within Atu0663at 658.678 kb on + strand, within Atu0663at 658.694 kb on + strand, within Atu0663at 658.741 kb on - strand, within Atu0663at 658.763 kb on - strand, within Atu0663at 658.771 kb on + strand, within Atu0663at 658.774 kb on - strand, within Atu0663at 658.781 kb on + strand, within Atu0663at 658.787 kb on - strand, within Atu0663at 658.888 kb on - strand, within Atu0663at 658.906 kb on + strandat 658.965 kb on + strandat 658.965 kb on - strandat 659.005 kb on + strandat 659.013 kb on - strandat 659.056 kb on - strandat 659.058 kb on + strandat 659.092 kb on + strandat 659.117 kb on + strandat 659.125 kb on - strandat 659.127 kb on + strandat 659.183 kb on - strandat 659.191 kb on + strandat 659.199 kb on - strandat 659.201 kb on + strandat 659.201 kb on + strandat 659.201 kb on + strandat 659.209 kb on - strandat 659.209 kb on - strandat 659.209 kb on - strandat 659.274 kb on - strandat 659.296 kb on - strand, within Atu0664at 659.300 kb on + strand, within Atu0664at 659.308 kb on - strand, within Atu0664at 659.355 kb on + strand, within Atu0664at 659.388 kb on - strand, within Atu0664at 659.398 kb on - strand, within Atu0664at 659.407 kb on + strand, within Atu0664at 659.506 kb on + strand, within Atu0664at 659.568 kb on - strand, within Atu0664at 659.573 kb on - strand, within Atu0664at 659.600 kb on + strand, within Atu0664at 659.674 kb on + strand, within Atu0664at 659.740 kb on - strand, within Atu0664at 659.740 kb on - strand, within Atu0664at 659.747 kb on + strand, within Atu0664at 659.763 kb on - strand, within Atu0664at 659.827 kb on + strand, within Atu0664at 659.881 kb on + strand, within Atu0664at 659.893 kb on - strand, within Atu0664at 660.012 kb on + strandat 660.020 kb on + strandat 660.076 kb on - strandat 660.193 kb on + strandat 660.197 kb on - strandat 660.275 kb on + strandat 660.276 kb on - strandat 660.283 kb on - strandat 660.304 kb on - strandat 660.330 kb on - strandat 660.374 kb on + strand, within Atu0665at 660.382 kb on - strand, within Atu0665at 660.384 kb on - strand, within Atu0665at 660.384 kb on - strand, within Atu0665at 660.421 kb on + strand, within Atu0665at 660.432 kb on + strand, within Atu0665at 660.619 kb on - strand, within Atu0665at 660.667 kb on - strand, within Atu0665at 660.690 kb on + strand, within Atu0665at 660.810 kb on - strand, within Atu0665at 660.868 kb on - strand, within Atu0665at 660.965 kb on - strand, within Atu0665

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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658,255 + Atu0663 0.39 +1.0
658,279 - Atu0663 0.41 +0.2
658,289 + Atu0663 0.42 +0.9
658,307 - Atu0663 0.43 -0.1
658,338 + Atu0663 0.46 -0.1
658,362 + Atu0663 0.48 +0.0
658,388 - Atu0663 0.50 +1.1
658,522 - Atu0663 0.60 -0.2
658,522 - Atu0663 0.60 +0.4
658,560 + Atu0663 0.63 -0.2
658,616 - Atu0663 0.68 -0.2
658,616 - Atu0663 0.68 +0.1
658,616 - Atu0663 0.68 +0.6
658,678 + Atu0663 0.73 +0.1
658,694 + Atu0663 0.74 -0.9
658,741 - Atu0663 0.77 +0.1
658,763 - Atu0663 0.79 -0.4
658,771 + Atu0663 0.80 -0.9
658,774 - Atu0663 0.80 +0.1
658,781 + Atu0663 0.81 +0.4
658,787 - Atu0663 0.81 +0.7
658,888 - Atu0663 0.89 +0.9
658,906 + -0.1
658,965 + +0.1
658,965 - -0.1
659,005 + -0.7
659,013 - -1.4
659,056 - -0.4
659,058 + -0.1
659,092 + +0.4
659,117 + -1.9
659,125 - -0.0
659,127 + +0.0
659,183 - -0.5
659,191 + -0.2
659,199 - +0.3
659,201 + +3.3
659,201 + +0.1
659,201 + +0.2
659,209 - -0.1
659,209 - -2.0
659,209 - +0.2
659,274 - -2.8
659,296 - Atu0664 0.11 -0.9
659,300 + Atu0664 0.12 -1.6
659,308 - Atu0664 0.13 -2.6
659,355 + Atu0664 0.18 -2.8
659,388 - Atu0664 0.22 -2.6
659,398 - Atu0664 0.23 -1.9
659,407 + Atu0664 0.24 -1.0
659,506 + Atu0664 0.35 -3.1
659,568 - Atu0664 0.42 -2.1
659,573 - Atu0664 0.42 -2.4
659,600 + Atu0664 0.45 -2.9
659,674 + Atu0664 0.53 -2.7
659,740 - Atu0664 0.61 -2.9
659,740 - Atu0664 0.61 +0.7
659,747 + Atu0664 0.62 -2.6
659,763 - Atu0664 0.63 -3.2
659,827 + Atu0664 0.70 -3.2
659,881 + Atu0664 0.76 -2.4
659,893 - Atu0664 0.78 -1.2
660,012 + -2.4
660,020 + -2.8
660,076 - -3.0
660,193 + -0.8
660,197 - -0.1
660,275 + -0.9
660,276 - -0.6
660,283 - -0.3
660,304 - -0.3
660,330 - +0.0
660,374 + Atu0665 0.12 +0.6
660,382 - Atu0665 0.12 -0.3
660,384 - Atu0665 0.13 -0.3
660,384 - Atu0665 0.13 +0.5
660,421 + Atu0665 0.15 -0.7
660,432 + Atu0665 0.16 +0.2
660,619 - Atu0665 0.29 -1.3
660,667 - Atu0665 0.32 +0.7
660,690 + Atu0665 0.34 +0.0
660,810 - Atu0665 0.42 +0.4
660,868 - Atu0665 0.46 -0.0
660,965 - Atu0665 0.53 -0.8

Or see this region's nucleotide sequence