Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0526 and Atu0527 are separated by 54 nucleotides Atu0527 and Atu0528 are separated by 322 nucleotides Atu0528 and Atu0529 are separated by 154 nucleotides
Atu0526: Atu0526 - methyl-accepting chemotaxis protein, at 515,805 to 517,652
Atu0526
Atu0527: Atu0527 - two component sensor kinase/response regulator hybrid, at 517,707 to 521,216
Atu0527
Atu0528: Atu0528 - large conductance mechanosensitive channel protein, at 521,539 to 521,967
Atu0528
Atu0529: Atu0529 - aspartate transaminase, at 522,122 to 523,288
Atu0529
Position (kb) 517
518
519
520
521
522 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 516.717 kb on - strand, within Atu0526 at 516.720 kb on + strand, within Atu0526 at 516.742 kb on + strand, within Atu0526 at 516.767 kb on - strand, within Atu0526 at 516.832 kb on + strand, within Atu0526 at 516.882 kb on + strand, within Atu0526 at 516.983 kb on - strand, within Atu0526 at 517.025 kb on + strand, within Atu0526 at 517.093 kb on - strand, within Atu0526 at 517.140 kb on - strand, within Atu0526 at 517.144 kb on + strand, within Atu0526 at 517.183 kb on - strand, within Atu0526 at 517.267 kb on + strand, within Atu0526 at 517.342 kb on - strand, within Atu0526 at 517.419 kb on + strand, within Atu0526 at 517.426 kb on - strand, within Atu0526 at 517.437 kb on - strand, within Atu0526 at 517.451 kb on + strand, within Atu0526 at 517.451 kb on + strand, within Atu0526 at 517.451 kb on - strand, within Atu0526 at 517.466 kb on - strand, within Atu0526 at 517.480 kb on + strand at 517.488 kb on - strand at 517.488 kb on - strand at 517.521 kb on - strand at 517.613 kb on - strand at 517.613 kb on - strand at 517.631 kb on - strand at 518.130 kb on - strand, within Atu0527 at 518.216 kb on + strand, within Atu0527 at 518.219 kb on - strand, within Atu0527 at 518.284 kb on + strand, within Atu0527 at 518.373 kb on + strand, within Atu0527 at 518.462 kb on - strand, within Atu0527 at 518.613 kb on + strand, within Atu0527 at 518.621 kb on - strand, within Atu0527 at 518.640 kb on + strand, within Atu0527 at 518.884 kb on - strand, within Atu0527 at 518.944 kb on - strand, within Atu0527 at 518.991 kb on - strand, within Atu0527 at 518.998 kb on + strand, within Atu0527 at 519.019 kb on - strand, within Atu0527 at 519.071 kb on - strand, within Atu0527 at 519.178 kb on - strand, within Atu0527 at 519.188 kb on - strand, within Atu0527 at 519.246 kb on + strand, within Atu0527 at 519.246 kb on + strand, within Atu0527 at 519.246 kb on + strand, within Atu0527 at 519.246 kb on + strand, within Atu0527 at 519.254 kb on - strand, within Atu0527 at 519.254 kb on - strand, within Atu0527 at 519.566 kb on + strand, within Atu0527 at 519.707 kb on + strand, within Atu0527 at 519.744 kb on + strand, within Atu0527 at 519.750 kb on - strand, within Atu0527 at 519.752 kb on - strand, within Atu0527 at 519.752 kb on - strand, within Atu0527 at 519.774 kb on + strand, within Atu0527 at 519.898 kb on + strand, within Atu0527 at 519.929 kb on - strand, within Atu0527 at 519.953 kb on + strand, within Atu0527 at 519.969 kb on + strand, within Atu0527 at 519.977 kb on - strand, within Atu0527 at 519.977 kb on - strand, within Atu0527 at 520.103 kb on - strand, within Atu0527 at 520.379 kb on + strand, within Atu0527 at 520.392 kb on + strand, within Atu0527 at 520.413 kb on + strand, within Atu0527 at 520.492 kb on + strand, within Atu0527 at 520.602 kb on - strand, within Atu0527 at 520.649 kb on - strand, within Atu0527 at 520.649 kb on - strand, within Atu0527 at 520.789 kb on + strand, within Atu0527 at 520.791 kb on + strand, within Atu0527 at 520.797 kb on - strand, within Atu0527 at 520.797 kb on - strand, within Atu0527 at 520.797 kb on - strand, within Atu0527 at 520.801 kb on + strand, within Atu0527 at 520.831 kb on + strand, within Atu0527 at 520.971 kb on + strand at 521.018 kb on - strand at 521.062 kb on + strand at 521.070 kb on - strand at 521.171 kb on - strand at 521.178 kb on + strand at 521.226 kb on - strand at 521.406 kb on + strand at 521.413 kb on - strand at 521.484 kb on + strand at 521.502 kb on + strand at 521.525 kb on - strand at 521.682 kb on - strand, within Atu0528 at 521.702 kb on + strand, within Atu0528 at 521.729 kb on + strand, within Atu0528 at 521.838 kb on + strand, within Atu0528 at 521.846 kb on - strand, within Atu0528 at 521.957 kb on + strand at 522.080 kb on - strand at 522.136 kb on - strand at 522.138 kb on + strand at 522.138 kb on + strand at 522.153 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 516,717 - Atu0526 0.49 +0.2 516,720 + Atu0526 0.50 -0.5 516,742 + Atu0526 0.51 -0.2 516,767 - Atu0526 0.52 +0.7 516,832 + Atu0526 0.56 -0.4 516,882 + Atu0526 0.58 +0.6 516,983 - Atu0526 0.64 -0.4 517,025 + Atu0526 0.66 -0.5 517,093 - Atu0526 0.70 +0.2 517,140 - Atu0526 0.72 +0.2 517,144 + Atu0526 0.72 -0.3 517,183 - Atu0526 0.75 -0.3 517,267 + Atu0526 0.79 +0.0 517,342 - Atu0526 0.83 -0.1 517,419 + Atu0526 0.87 +0.6 517,426 - Atu0526 0.88 -1.4 517,437 - Atu0526 0.88 +0.9 517,451 + Atu0526 0.89 -0.1 517,451 + Atu0526 0.89 -0.5 517,451 - Atu0526 0.89 +0.6 517,466 - Atu0526 0.90 -0.5 517,480 + +0.4 517,488 - +0.2 517,488 - -0.1 517,521 - +0.2 517,613 - +0.3 517,613 - -0.3 517,631 - +0.2 518,130 - Atu0527 0.12 +1.0 518,216 + Atu0527 0.15 -1.9 518,219 - Atu0527 0.15 -2.1 518,284 + Atu0527 0.16 -3.2 518,373 + Atu0527 0.19 -2.7 518,462 - Atu0527 0.22 -1.8 518,613 + Atu0527 0.26 -2.5 518,621 - Atu0527 0.26 -1.4 518,640 + Atu0527 0.27 -1.9 518,884 - Atu0527 0.34 -3.5 518,944 - Atu0527 0.35 -2.4 518,991 - Atu0527 0.37 -2.0 518,998 + Atu0527 0.37 -1.0 519,019 - Atu0527 0.37 -1.2 519,071 - Atu0527 0.39 -1.5 519,178 - Atu0527 0.42 -2.2 519,188 - Atu0527 0.42 -1.7 519,246 + Atu0527 0.44 -1.4 519,246 + Atu0527 0.44 -2.9 519,246 + Atu0527 0.44 -3.1 519,246 + Atu0527 0.44 -3.4 519,254 - Atu0527 0.44 -1.7 519,254 - Atu0527 0.44 -1.9 519,566 + Atu0527 0.53 -3.5 519,707 + Atu0527 0.57 -0.2 519,744 + Atu0527 0.58 -2.0 519,750 - Atu0527 0.58 -2.7 519,752 - Atu0527 0.58 -1.0 519,752 - Atu0527 0.58 -1.7 519,774 + Atu0527 0.59 -2.1 519,898 + Atu0527 0.62 -1.5 519,929 - Atu0527 0.63 -3.4 519,953 + Atu0527 0.64 -1.6 519,969 + Atu0527 0.64 -2.8 519,977 - Atu0527 0.65 -2.5 519,977 - Atu0527 0.65 -1.6 520,103 - Atu0527 0.68 -0.6 520,379 + Atu0527 0.76 -1.6 520,392 + Atu0527 0.76 -3.1 520,413 + Atu0527 0.77 +2.6 520,492 + Atu0527 0.79 -2.1 520,602 - Atu0527 0.82 +1.0 520,649 - Atu0527 0.84 -2.1 520,649 - Atu0527 0.84 -1.5 520,789 + Atu0527 0.88 -1.1 520,791 + Atu0527 0.88 -1.7 520,797 - Atu0527 0.88 -2.1 520,797 - Atu0527 0.88 +1.6 520,797 - Atu0527 0.88 -1.3 520,801 + Atu0527 0.88 -1.7 520,831 + Atu0527 0.89 -2.3 520,971 + -1.5 521,018 - -1.9 521,062 + -1.3 521,070 - -2.3 521,171 - -2.4 521,178 + -1.9 521,226 - +0.0 521,406 + -0.9 521,413 - +0.7 521,484 + -0.1 521,502 + +0.0 521,525 - -1.2 521,682 - Atu0528 0.33 +0.0 521,702 + Atu0528 0.38 +2.2 521,729 + Atu0528 0.44 +0.2 521,838 + Atu0528 0.70 -0.2 521,846 - Atu0528 0.72 -0.0 521,957 + -0.3 522,080 - -0.2 522,136 - -1.2 522,138 + +0.4 522,138 + +0.2 522,153 + -0.3
Or see this region's nucleotide sequence