Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0507 and Atu0508 overlap by 4 nucleotides Atu0508 and Atu0509 overlap by 4 nucleotides Atu0509 and Atu0510 overlap by 1 nucleotides Atu0510 and Atu0511 overlap by 1 nucleotides Atu0511 and Atu8131 overlap by 1 nucleotides
Atu0507: Atu0507 - potassium efflux system protein, at 497,142 to 497,486
Atu0507
Atu0508: Atu0508 - PH Adaption potassium efflux system, at 497,483 to 497,764
Atu0508
Atu0509: Atu0509 - phaE protein, at 497,761 to 498,246
Atu0509
Atu0510: Atu0510 - pH adaption potassium efflux system protein, at 498,246 to 499,889
Atu0510
Atu0511: Atu0511 - pH adaption potassium efflux system protein, at 499,889 to 500,224
Atu0511
Atu8131: Atu8131 - pH adaption potassium efflux system protein, at 500,224 to 503,142
Atu8131
Position (kb) 498
499
500 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 497.307 kb on + strand, within Atu0507 at 497.336 kb on - strand, within Atu0507 at 497.398 kb on + strand, within Atu0507 at 497.419 kb on + strand, within Atu0507 at 497.429 kb on + strand, within Atu0507 at 497.521 kb on + strand, within Atu0508 at 497.521 kb on + strand, within Atu0508 at 497.596 kb on + strand, within Atu0508 at 497.604 kb on - strand, within Atu0508 at 497.629 kb on + strand, within Atu0508 at 497.836 kb on + strand, within Atu0509 at 498.252 kb on - strand at 498.495 kb on - strand, within Atu0510 at 498.553 kb on - strand, within Atu0510 at 498.580 kb on + strand, within Atu0510 at 498.745 kb on + strand, within Atu0510 at 498.804 kb on - strand, within Atu0510 at 498.815 kb on + strand, within Atu0510 at 498.839 kb on + strand, within Atu0510 at 498.847 kb on - strand, within Atu0510 at 498.847 kb on - strand, within Atu0510 at 498.853 kb on + strand, within Atu0510 at 498.853 kb on + strand, within Atu0510 at 499.122 kb on - strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.255 kb on + strand, within Atu0510 at 499.277 kb on + strand, within Atu0510 at 499.288 kb on + strand, within Atu0510 at 499.296 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.320 kb on - strand, within Atu0510 at 499.322 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.369 kb on + strand, within Atu0510 at 499.371 kb on + strand, within Atu0510 at 499.377 kb on - strand, within Atu0510 at 499.615 kb on - strand, within Atu0510 at 499.652 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.681 kb on - strand, within Atu0510 at 499.761 kb on + strand at 499.924 kb on + strand, within Atu0511 at 499.928 kb on - strand, within Atu0511 at 499.932 kb on - strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.953 kb on + strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.961 kb on - strand, within Atu0511 at 499.966 kb on - strand, within Atu0511 at 500.014 kb on + strand, within Atu0511 at 500.029 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.112 kb on + strand, within Atu0511 at 500.151 kb on - strand, within Atu0511 at 500.444 kb on - strand at 500.470 kb on - strand at 500.514 kb on + strand at 500.626 kb on + strand, within Atu8131 at 500.705 kb on + strand, within Atu8131 at 500.814 kb on - strand, within Atu8131 at 500.838 kb on - strand, within Atu8131
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 497,307 + Atu0507 0.48 -1.9 497,336 - Atu0507 0.56 -0.3 497,398 + Atu0507 0.74 -0.9 497,419 + Atu0507 0.80 -1.1 497,429 + Atu0507 0.83 -0.4 497,521 + Atu0508 0.13 -1.3 497,521 + Atu0508 0.13 -0.5 497,596 + Atu0508 0.40 -1.6 497,604 - Atu0508 0.43 -0.2 497,629 + Atu0508 0.52 -0.2 497,836 + Atu0509 0.15 -1.4 498,252 - -0.3 498,495 - Atu0510 0.15 -0.7 498,553 - Atu0510 0.19 -0.1 498,580 + Atu0510 0.20 +0.6 498,745 + Atu0510 0.30 +0.2 498,804 - Atu0510 0.34 -0.5 498,815 + Atu0510 0.35 +0.1 498,839 + Atu0510 0.36 +0.2 498,847 - Atu0510 0.37 +0.0 498,847 - Atu0510 0.37 -1.3 498,853 + Atu0510 0.37 -0.6 498,853 + Atu0510 0.37 -1.4 499,122 - Atu0510 0.53 -1.7 499,255 + Atu0510 0.61 -1.4 499,255 + Atu0510 0.61 +0.5 499,277 + Atu0510 0.63 -1.1 499,288 + Atu0510 0.63 -3.0 499,296 - Atu0510 0.64 +0.0 499,320 - Atu0510 0.65 -1.8 499,320 - Atu0510 0.65 -0.6 499,322 + Atu0510 0.65 -0.8 499,369 + Atu0510 0.68 -1.1 499,369 + Atu0510 0.68 -1.7 499,371 + Atu0510 0.68 -0.4 499,377 - Atu0510 0.69 -0.8 499,615 - Atu0510 0.83 -0.6 499,652 - Atu0510 0.86 -1.5 499,681 - Atu0510 0.87 -0.4 499,681 - Atu0510 0.87 -1.3 499,761 + +0.4 499,924 + Atu0511 0.10 -0.7 499,928 - Atu0511 0.12 +0.0 499,932 - Atu0511 0.13 -0.6 499,953 + Atu0511 0.19 +0.3 499,953 + Atu0511 0.19 +0.4 499,961 - Atu0511 0.21 +0.8 499,961 - Atu0511 0.21 +0.6 499,966 - Atu0511 0.23 -2.0 500,014 + Atu0511 0.37 -0.4 500,029 + Atu0511 0.42 -0.5 500,112 + Atu0511 0.66 -0.6 500,112 + Atu0511 0.66 -1.5 500,151 - Atu0511 0.78 -0.7 500,444 - -0.7 500,470 - -2.0 500,514 + -0.8 500,626 + Atu8131 0.14 -2.0 500,705 + Atu8131 0.16 +0.0 500,814 - Atu8131 0.20 +0.2 500,838 - Atu8131 0.21 -0.4
Or see this region's nucleotide sequence