Experiment: 150_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22570 and AMB_RS22575 are separated by 45 nucleotides AMB_RS22575 and AMB_RS22580 are separated by 6 nucleotides AMB_RS22580 and AMB_RS22585 are separated by 49 nucleotides
AMB_RS22570: AMB_RS22570 - transcriptional repressor, at 4,871,376 to 4,871,807
_RS22570
AMB_RS22575: AMB_RS22575 - GNAT family N-acetyltransferase, at 4,871,853 to 4,872,659
_RS22575
AMB_RS22580: AMB_RS22580 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 4,872,666 to 4,873,475
_RS22580
AMB_RS22585: AMB_RS22585 - tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase, at 4,873,525 to 4,874,841
_RS22585
Position (kb) 4872
4873
4874 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4871.763 kb on + strand, within AMB_RS22570 at 4871.764 kb on - strand at 4871.764 kb on - strand at 4871.764 kb on - strand at 4871.805 kb on + strand at 4871.806 kb on - strand at 4871.806 kb on - strand at 4871.806 kb on - strand at 4871.806 kb on - strand at 4871.806 kb on - strand at 4871.806 kb on - strand at 4871.806 kb on - strand at 4871.806 kb on - strand at 4871.962 kb on - strand, within AMB_RS22575 at 4871.962 kb on - strand, within AMB_RS22575 at 4871.962 kb on - strand, within AMB_RS22575 at 4872.099 kb on + strand, within AMB_RS22575 at 4872.099 kb on + strand, within AMB_RS22575 at 4872.099 kb on + strand, within AMB_RS22575 at 4872.100 kb on - strand, within AMB_RS22575 at 4872.100 kb on - strand, within AMB_RS22575 at 4872.144 kb on + strand, within AMB_RS22575 at 4872.144 kb on + strand, within AMB_RS22575 at 4872.145 kb on - strand, within AMB_RS22575 at 4872.145 kb on - strand, within AMB_RS22575 at 4872.145 kb on - strand, within AMB_RS22575 at 4872.145 kb on - strand, within AMB_RS22575 at 4872.146 kb on + strand, within AMB_RS22575 at 4872.146 kb on + strand, within AMB_RS22575 at 4872.147 kb on - strand, within AMB_RS22575 at 4872.147 kb on - strand, within AMB_RS22575 at 4872.147 kb on - strand, within AMB_RS22575 at 4872.159 kb on + strand, within AMB_RS22575 at 4872.160 kb on - strand, within AMB_RS22575 at 4872.173 kb on + strand, within AMB_RS22575 at 4872.173 kb on + strand, within AMB_RS22575 at 4872.173 kb on + strand, within AMB_RS22575 at 4872.173 kb on + strand, within AMB_RS22575 at 4872.173 kb on + strand, within AMB_RS22575 at 4872.174 kb on - strand, within AMB_RS22575 at 4872.174 kb on - strand, within AMB_RS22575 at 4872.174 kb on - strand, within AMB_RS22575 at 4872.174 kb on - strand, within AMB_RS22575 at 4872.174 kb on - strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.279 kb on + strand, within AMB_RS22575 at 4872.280 kb on - strand, within AMB_RS22575 at 4872.280 kb on - strand, within AMB_RS22575 at 4872.280 kb on - strand, within AMB_RS22575 at 4872.366 kb on + strand, within AMB_RS22575 at 4872.366 kb on + strand, within AMB_RS22575 at 4872.366 kb on + strand, within AMB_RS22575 at 4872.367 kb on - strand, within AMB_RS22575 at 4872.367 kb on - strand, within AMB_RS22575 at 4872.372 kb on + strand, within AMB_RS22575 at 4872.372 kb on + strand, within AMB_RS22575 at 4872.372 kb on + strand, within AMB_RS22575 at 4872.372 kb on + strand, within AMB_RS22575 at 4872.372 kb on + strand, within AMB_RS22575 at 4872.372 kb on + strand, within AMB_RS22575 at 4872.372 kb on + strand, within AMB_RS22575 at 4872.373 kb on - strand, within AMB_RS22575 at 4872.373 kb on - strand, within AMB_RS22575 at 4872.373 kb on - strand, within AMB_RS22575 at 4872.373 kb on - strand, within AMB_RS22575 at 4872.507 kb on + strand, within AMB_RS22575 at 4872.507 kb on + strand, within AMB_RS22575 at 4872.612 kb on + strand at 4872.612 kb on + strand at 4872.612 kb on + strand at 4872.613 kb on - strand at 4872.613 kb on - strand at 4872.624 kb on + strand at 4872.624 kb on + strand at 4872.624 kb on + strand at 4872.624 kb on + strand at 4872.625 kb on - strand at 4872.625 kb on - strand at 4872.625 kb on - strand at 4872.625 kb on - strand at 4872.657 kb on + strand at 4872.657 kb on + strand at 4872.657 kb on + strand at 4872.657 kb on + strand at 4872.658 kb on - strand at 4872.658 kb on - strand at 4872.658 kb on - strand at 4872.658 kb on - strand at 4872.658 kb on - strand at 4872.658 kb on - strand at 4872.658 kb on - strand at 4872.780 kb on + strand, within AMB_RS22580 at 4872.781 kb on - strand, within AMB_RS22580 at 4872.792 kb on + strand, within AMB_RS22580 at 4872.793 kb on - strand, within AMB_RS22580 at 4872.793 kb on - strand, within AMB_RS22580 at 4872.793 kb on - strand, within AMB_RS22580 at 4872.873 kb on + strand, within AMB_RS22580 at 4872.873 kb on + strand, within AMB_RS22580 at 4872.873 kb on + strand, within AMB_RS22580 at 4872.873 kb on + strand, within AMB_RS22580 at 4872.874 kb on - strand, within AMB_RS22580 at 4872.874 kb on - strand, within AMB_RS22580 at 4872.874 kb on - strand, within AMB_RS22580 at 4872.874 kb on - strand, within AMB_RS22580 at 4872.874 kb on - strand, within AMB_RS22580 at 4872.894 kb on + strand, within AMB_RS22580 at 4872.894 kb on + strand, within AMB_RS22580 at 4872.894 kb on + strand, within AMB_RS22580 at 4872.894 kb on + strand, within AMB_RS22580 at 4872.894 kb on + strand, within AMB_RS22580 at 4872.894 kb on + strand, within AMB_RS22580 at 4872.895 kb on - strand, within AMB_RS22580 at 4872.895 kb on - strand, within AMB_RS22580 at 4872.895 kb on - strand, within AMB_RS22580 at 4872.895 kb on - strand, within AMB_RS22580 at 4872.895 kb on - strand, within AMB_RS22580 at 4872.895 kb on - strand, within AMB_RS22580 at 4872.933 kb on + strand, within AMB_RS22580 at 4872.934 kb on - strand, within AMB_RS22580 at 4873.186 kb on + strand, within AMB_RS22580 at 4873.187 kb on - strand, within AMB_RS22580 at 4873.187 kb on - strand, within AMB_RS22580 at 4873.224 kb on + strand, within AMB_RS22580 at 4873.224 kb on + strand, within AMB_RS22580 at 4873.224 kb on + strand, within AMB_RS22580 at 4873.224 kb on + strand, within AMB_RS22580 at 4873.225 kb on - strand, within AMB_RS22580 at 4873.225 kb on - strand, within AMB_RS22580 at 4873.225 kb on - strand, within AMB_RS22580 at 4873.225 kb on - strand, within AMB_RS22580 at 4873.225 kb on - strand, within AMB_RS22580 at 4873.225 kb on - strand, within AMB_RS22580 at 4873.226 kb on + strand, within AMB_RS22580 at 4873.226 kb on + strand, within AMB_RS22580 at 4873.226 kb on + strand, within AMB_RS22580 at 4873.226 kb on + strand, within AMB_RS22580 at 4873.227 kb on - strand, within AMB_RS22580 at 4873.227 kb on - strand, within AMB_RS22580 at 4873.227 kb on - strand, within AMB_RS22580 at 4873.496 kb on - strand at 4873.518 kb on + strand at 4873.553 kb on - strand at 4873.573 kb on + strand at 4873.573 kb on + strand at 4873.573 kb on + strand at 4873.573 kb on + strand at 4873.574 kb on - strand at 4873.574 kb on - strand at 4873.616 kb on - strand at 4873.647 kb on + strand at 4873.671 kb on + strand, within AMB_RS22585 at 4873.671 kb on + strand, within AMB_RS22585 at 4873.672 kb on - strand, within AMB_RS22585 at 4873.855 kb on + strand, within AMB_RS22585 at 4873.855 kb on + strand, within AMB_RS22585 at 4873.855 kb on + strand, within AMB_RS22585 at 4873.855 kb on + strand, within AMB_RS22585 at 4873.855 kb on + strand, within AMB_RS22585 at 4873.855 kb on + strand, within AMB_RS22585 at 4873.855 kb on + strand, within AMB_RS22585 at 4873.856 kb on - strand, within AMB_RS22585 at 4873.856 kb on - strand, within AMB_RS22585 at 4873.856 kb on - strand, within AMB_RS22585 at 4874.035 kb on + strand, within AMB_RS22585 at 4874.035 kb on + strand, within AMB_RS22585 at 4874.035 kb on + strand, within AMB_RS22585 at 4874.036 kb on - strand, within AMB_RS22585 at 4874.036 kb on - strand, within AMB_RS22585 at 4874.036 kb on - strand, within AMB_RS22585 at 4874.038 kb on - strand, within AMB_RS22585 at 4874.053 kb on + strand, within AMB_RS22585 at 4874.053 kb on + strand, within AMB_RS22585 at 4874.053 kb on + strand, within AMB_RS22585 at 4874.054 kb on - strand, within AMB_RS22585 at 4874.228 kb on - strand, within AMB_RS22585 at 4874.349 kb on + strand, within AMB_RS22585 at 4874.377 kb on + strand, within AMB_RS22585 at 4874.377 kb on + strand, within AMB_RS22585 at 4874.377 kb on + strand, within AMB_RS22585 at 4874.377 kb on + strand, within AMB_RS22585 at 4874.377 kb on + strand, within AMB_RS22585 at 4874.377 kb on + strand, within AMB_RS22585 at 4874.377 kb on + strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585 at 4874.378 kb on - strand, within AMB_RS22585
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_1 remove 4,871,763 + AMB_RS22570 0.90 +0.1 4,871,764 - -1.1 4,871,764 - +0.4 4,871,764 - -1.2 4,871,805 + -1.1 4,871,806 - +0.7 4,871,806 - +0.1 4,871,806 - -0.3 4,871,806 - +0.6 4,871,806 - -0.4 4,871,806 - -2.6 4,871,806 - +0.4 4,871,806 - +0.4 4,871,962 - AMB_RS22575 0.14 -2.6 4,871,962 - AMB_RS22575 0.14 +1.4 4,871,962 - AMB_RS22575 0.14 +1.2 4,872,099 + AMB_RS22575 0.30 -0.5 4,872,099 + AMB_RS22575 0.30 -2.1 4,872,099 + AMB_RS22575 0.30 -0.2 4,872,100 - AMB_RS22575 0.31 +0.6 4,872,100 - AMB_RS22575 0.31 -1.5 4,872,144 + AMB_RS22575 0.36 -0.7 4,872,144 + AMB_RS22575 0.36 -0.9 4,872,145 - AMB_RS22575 0.36 -0.2 4,872,145 - AMB_RS22575 0.36 -0.3 4,872,145 - AMB_RS22575 0.36 -0.3 4,872,145 - AMB_RS22575 0.36 +0.3 4,872,146 + AMB_RS22575 0.36 -0.4 4,872,146 + AMB_RS22575 0.36 -0.5 4,872,147 - AMB_RS22575 0.36 -0.9 4,872,147 - AMB_RS22575 0.36 -0.9 4,872,147 - AMB_RS22575 0.36 -0.3 4,872,159 + AMB_RS22575 0.38 -1.5 4,872,160 - AMB_RS22575 0.38 -0.6 4,872,173 + AMB_RS22575 0.40 +0.5 4,872,173 + AMB_RS22575 0.40 -1.6 4,872,173 + AMB_RS22575 0.40 -0.0 4,872,173 + AMB_RS22575 0.40 -1.8 4,872,173 + AMB_RS22575 0.40 -0.6 4,872,174 - AMB_RS22575 0.40 -0.4 4,872,174 - AMB_RS22575 0.40 +0.4 4,872,174 - AMB_RS22575 0.40 +1.5 4,872,174 - AMB_RS22575 0.40 -0.3 4,872,174 - AMB_RS22575 0.40 -1.1 4,872,279 + AMB_RS22575 0.53 -0.5 4,872,279 + AMB_RS22575 0.53 +1.1 4,872,279 + AMB_RS22575 0.53 -0.3 4,872,279 + AMB_RS22575 0.53 -0.5 4,872,279 + AMB_RS22575 0.53 -0.8 4,872,279 + AMB_RS22575 0.53 -1.6 4,872,279 + AMB_RS22575 0.53 +0.0 4,872,279 + AMB_RS22575 0.53 -0.8 4,872,280 - AMB_RS22575 0.53 -0.2 4,872,280 - AMB_RS22575 0.53 -0.2 4,872,280 - AMB_RS22575 0.53 +0.1 4,872,366 + AMB_RS22575 0.64 -0.3 4,872,366 + AMB_RS22575 0.64 -2.2 4,872,366 + AMB_RS22575 0.64 +0.2 4,872,367 - AMB_RS22575 0.64 -0.9 4,872,367 - AMB_RS22575 0.64 -0.8 4,872,372 + AMB_RS22575 0.64 +0.2 4,872,372 + AMB_RS22575 0.64 -1.8 4,872,372 + AMB_RS22575 0.64 -0.3 4,872,372 + AMB_RS22575 0.64 -1.4 4,872,372 + AMB_RS22575 0.64 +1.4 4,872,372 + AMB_RS22575 0.64 -0.4 4,872,372 + AMB_RS22575 0.64 +2.2 4,872,373 - AMB_RS22575 0.64 -3.1 4,872,373 - AMB_RS22575 0.64 -2.1 4,872,373 - AMB_RS22575 0.64 -0.5 4,872,373 - AMB_RS22575 0.64 -1.2 4,872,507 + AMB_RS22575 0.81 +0.1 4,872,507 + AMB_RS22575 0.81 -0.8 4,872,612 + -0.4 4,872,612 + -0.5 4,872,612 + +0.5 4,872,613 - -2.2 4,872,613 - -0.2 4,872,624 + +0.1 4,872,624 + +0.4 4,872,624 + -1.4 4,872,624 + -0.2 4,872,625 - -0.6 4,872,625 - -1.1 4,872,625 - -1.6 4,872,625 - -1.3 4,872,657 + +0.1 4,872,657 + -0.8 4,872,657 + -1.7 4,872,657 + -0.2 4,872,658 - -1.4 4,872,658 - +0.2 4,872,658 - -0.3 4,872,658 - -0.5 4,872,658 - +0.9 4,872,658 - -0.4 4,872,658 - -0.4 4,872,780 + AMB_RS22580 0.14 +0.8 4,872,781 - AMB_RS22580 0.14 -2.1 4,872,792 + AMB_RS22580 0.16 -0.2 4,872,793 - AMB_RS22580 0.16 -1.1 4,872,793 - AMB_RS22580 0.16 +0.2 4,872,793 - AMB_RS22580 0.16 -3.2 4,872,873 + AMB_RS22580 0.26 -2.1 4,872,873 + AMB_RS22580 0.26 -0.6 4,872,873 + AMB_RS22580 0.26 -3.4 4,872,873 + AMB_RS22580 0.26 -0.4 4,872,874 - AMB_RS22580 0.26 -0.4 4,872,874 - AMB_RS22580 0.26 -0.4 4,872,874 - AMB_RS22580 0.26 -2.8 4,872,874 - AMB_RS22580 0.26 -3.2 4,872,874 - AMB_RS22580 0.26 -1.0 4,872,894 + AMB_RS22580 0.28 -1.4 4,872,894 + AMB_RS22580 0.28 -2.1 4,872,894 + AMB_RS22580 0.28 -0.8 4,872,894 + AMB_RS22580 0.28 -2.4 4,872,894 + AMB_RS22580 0.28 -1.1 4,872,894 + AMB_RS22580 0.28 -0.4 4,872,895 - AMB_RS22580 0.28 +0.4 4,872,895 - AMB_RS22580 0.28 -0.8 4,872,895 - AMB_RS22580 0.28 +1.4 4,872,895 - AMB_RS22580 0.28 -3.1 4,872,895 - AMB_RS22580 0.28 -0.5 4,872,895 - AMB_RS22580 0.28 -0.6 4,872,933 + AMB_RS22580 0.33 +0.4 4,872,934 - AMB_RS22580 0.33 -0.1 4,873,186 + AMB_RS22580 0.64 +0.6 4,873,187 - AMB_RS22580 0.64 -1.6 4,873,187 - AMB_RS22580 0.64 -1.8 4,873,224 + AMB_RS22580 0.69 -1.1 4,873,224 + AMB_RS22580 0.69 +1.4 4,873,224 + AMB_RS22580 0.69 -0.8 4,873,224 + AMB_RS22580 0.69 -0.6 4,873,225 - AMB_RS22580 0.69 -1.3 4,873,225 - AMB_RS22580 0.69 +0.4 4,873,225 - AMB_RS22580 0.69 -1.9 4,873,225 - AMB_RS22580 0.69 -2.5 4,873,225 - AMB_RS22580 0.69 -1.4 4,873,225 - AMB_RS22580 0.69 -2.4 4,873,226 + AMB_RS22580 0.69 -0.7 4,873,226 + AMB_RS22580 0.69 +0.4 4,873,226 + AMB_RS22580 0.69 -0.4 4,873,226 + AMB_RS22580 0.69 +0.4 4,873,227 - AMB_RS22580 0.69 -0.5 4,873,227 - AMB_RS22580 0.69 +1.1 4,873,227 - AMB_RS22580 0.69 +0.1 4,873,496 - -0.2 4,873,518 + +0.4 4,873,553 - -0.5 4,873,573 + +0.1 4,873,573 + -0.3 4,873,573 + +0.3 4,873,573 + -2.4 4,873,574 - +0.3 4,873,574 - +0.4 4,873,616 - +0.2 4,873,647 + +0.3 4,873,671 + AMB_RS22585 0.11 +0.1 4,873,671 + AMB_RS22585 0.11 -0.3 4,873,672 - AMB_RS22585 0.11 -2.3 4,873,855 + AMB_RS22585 0.25 -1.1 4,873,855 + AMB_RS22585 0.25 +0.2 4,873,855 + AMB_RS22585 0.25 -0.4 4,873,855 + AMB_RS22585 0.25 -1.0 4,873,855 + AMB_RS22585 0.25 +2.1 4,873,855 + AMB_RS22585 0.25 -0.5 4,873,855 + AMB_RS22585 0.25 -0.9 4,873,856 - AMB_RS22585 0.25 +0.2 4,873,856 - AMB_RS22585 0.25 -0.9 4,873,856 - AMB_RS22585 0.25 -0.8 4,874,035 + AMB_RS22585 0.39 -0.7 4,874,035 + AMB_RS22585 0.39 +0.2 4,874,035 + AMB_RS22585 0.39 -0.1 4,874,036 - AMB_RS22585 0.39 -0.2 4,874,036 - AMB_RS22585 0.39 -0.9 4,874,036 - AMB_RS22585 0.39 +0.4 4,874,038 - AMB_RS22585 0.39 -0.5 4,874,053 + AMB_RS22585 0.40 -1.4 4,874,053 + AMB_RS22585 0.40 -0.2 4,874,053 + AMB_RS22585 0.40 -0.6 4,874,054 - AMB_RS22585 0.40 +0.3 4,874,228 - AMB_RS22585 0.53 -0.4 4,874,349 + AMB_RS22585 0.63 -0.8 4,874,377 + AMB_RS22585 0.65 +0.3 4,874,377 + AMB_RS22585 0.65 -0.2 4,874,377 + AMB_RS22585 0.65 +0.8 4,874,377 + AMB_RS22585 0.65 -0.2 4,874,377 + AMB_RS22585 0.65 -0.1 4,874,377 + AMB_RS22585 0.65 +0.1 4,874,377 + AMB_RS22585 0.65 -2.1 4,874,378 - AMB_RS22585 0.65 -0.7 4,874,378 - AMB_RS22585 0.65 +0.0 4,874,378 - AMB_RS22585 0.65 -0.2 4,874,378 - AMB_RS22585 0.65 -1.1 4,874,378 - AMB_RS22585 0.65 -0.1 4,874,378 - AMB_RS22585 0.65 -0.6 4,874,378 - AMB_RS22585 0.65 -0.0 4,874,378 - AMB_RS22585 0.65 -0.6 4,874,378 - AMB_RS22585 0.65 +0.8 4,874,378 - AMB_RS22585 0.65 -1.2 4,874,378 - AMB_RS22585 0.65 -0.9 4,874,378 - AMB_RS22585 0.65 -0.2 4,874,378 - AMB_RS22585 0.65 +0.4
Or see this region's nucleotide sequence