Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21770

Experiment: 150_initial_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS21765 and AMB_RS21770 are separated by 218 nucleotidesAMB_RS21770 and AMB_RS21775 are separated by 82 nucleotidesAMB_RS21775 and AMB_RS24725 are separated by 126 nucleotides AMB_RS21765: AMB_RS21765 - Hsp70 family protein, at 4,709,498 to 4,710,784 _RS21765 AMB_RS21770: AMB_RS21770 - membrane protein, at 4,711,003 to 4,712,556 _RS21770 AMB_RS21775: AMB_RS21775 - transcriptional repressor, at 4,712,639 to 4,713,058 _RS21775 AMB_RS24725: AMB_RS24725 - IS5/IS1182 family transposase, at 4,713,185 to 4,714,026 _RS24725 Position (kb) 4711 4712 4713Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.042 kb on + strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.043 kb on - strand, within AMB_RS21765at 4710.261 kb on + strand, within AMB_RS21765at 4710.261 kb on + strand, within AMB_RS21765at 4710.261 kb on + strand, within AMB_RS21765at 4710.261 kb on + strand, within AMB_RS21765at 4710.262 kb on - strand, within AMB_RS21765at 4710.264 kb on + strand, within AMB_RS21765at 4710.265 kb on - strand, within AMB_RS21765at 4710.265 kb on - strand, within AMB_RS21765at 4710.267 kb on + strand, within AMB_RS21765at 4710.289 kb on - strand, within AMB_RS21765at 4710.289 kb on - strand, within AMB_RS21765at 4710.289 kb on - strand, within AMB_RS21765at 4710.352 kb on - strand, within AMB_RS21765at 4710.490 kb on - strand, within AMB_RS21765at 4710.490 kb on - strand, within AMB_RS21765at 4710.490 kb on - strand, within AMB_RS21765at 4710.501 kb on + strand, within AMB_RS21765at 4710.501 kb on + strand, within AMB_RS21765at 4710.501 kb on + strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.502 kb on - strand, within AMB_RS21765at 4710.537 kb on + strand, within AMB_RS21765at 4710.537 kb on + strand, within AMB_RS21765at 4710.537 kb on + strand, within AMB_RS21765at 4710.537 kb on + strand, within AMB_RS21765at 4710.537 kb on + strand, within AMB_RS21765at 4710.538 kb on - strand, within AMB_RS21765at 4710.585 kb on + strand, within AMB_RS21765at 4710.585 kb on + strand, within AMB_RS21765at 4710.585 kb on + strand, within AMB_RS21765at 4710.586 kb on - strand, within AMB_RS21765at 4710.586 kb on - strand, within AMB_RS21765at 4710.586 kb on - strand, within AMB_RS21765at 4710.586 kb on - strand, within AMB_RS21765at 4710.833 kb on + strandat 4710.833 kb on + strandat 4710.834 kb on - strandat 4710.834 kb on - strandat 4710.834 kb on - strandat 4711.253 kb on - strand, within AMB_RS21770at 4711.750 kb on + strand, within AMB_RS21770at 4711.750 kb on + strand, within AMB_RS21770at 4711.751 kb on - strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.819 kb on + strand, within AMB_RS21770at 4711.820 kb on - strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.173 kb on + strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.174 kb on - strand, within AMB_RS21770at 4712.229 kb on - strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.374 kb on + strand, within AMB_RS21770at 4712.375 kb on - strand, within AMB_RS21770at 4712.379 kb on - strand, within AMB_RS21770at 4712.421 kb on + strandat 4712.421 kb on + strandat 4712.422 kb on - strandat 4712.422 kb on - strandat 4712.422 kb on - strandat 4712.431 kb on + strandat 4712.431 kb on + strandat 4712.431 kb on + strandat 4712.431 kb on + strandat 4712.432 kb on - strandat 4712.432 kb on - strandat 4712.497 kb on + strandat 4712.497 kb on + strandat 4712.497 kb on + strandat 4712.497 kb on + strandat 4712.498 kb on - strandat 4712.527 kb on + strandat 4712.555 kb on - strandat 4712.631 kb on + strandat 4712.631 kb on + strandat 4712.631 kb on + strandat 4712.631 kb on + strandat 4712.632 kb on - strandat 4712.760 kb on + strand, within AMB_RS21775at 4712.761 kb on - strand, within AMB_RS21775at 4712.761 kb on - strand, within AMB_RS21775at 4712.761 kb on - strand, within AMB_RS21775at 4712.785 kb on + strand, within AMB_RS21775at 4712.785 kb on + strand, within AMB_RS21775at 4712.786 kb on - strand, within AMB_RS21775at 4712.786 kb on - strand, within AMB_RS21775at 4712.786 kb on - strand, within AMB_RS21775at 4712.799 kb on + strand, within AMB_RS21775at 4712.799 kb on + strand, within AMB_RS21775at 4712.800 kb on - strand, within AMB_RS21775at 4712.868 kb on + strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4712.869 kb on - strand, within AMB_RS21775at 4713.033 kb on + strandat 4713.033 kb on + strandat 4713.033 kb on + strandat 4713.047 kb on - strandat 4713.047 kb on - strandat 4713.102 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
remove
4,710,042 + AMB_RS21765 0.42 -0.6
4,710,042 + AMB_RS21765 0.42 -1.4
4,710,042 + AMB_RS21765 0.42 -0.4
4,710,042 + AMB_RS21765 0.42 -1.1
4,710,042 + AMB_RS21765 0.42 +1.3
4,710,042 + AMB_RS21765 0.42 -1.6
4,710,042 + AMB_RS21765 0.42 -0.5
4,710,042 + AMB_RS21765 0.42 +0.4
4,710,042 + AMB_RS21765 0.42 -0.1
4,710,042 + AMB_RS21765 0.42 -1.6
4,710,042 + AMB_RS21765 0.42 -0.1
4,710,042 + AMB_RS21765 0.42 -0.3
4,710,042 + AMB_RS21765 0.42 -0.2
4,710,043 - AMB_RS21765 0.42 -0.3
4,710,043 - AMB_RS21765 0.42 +0.5
4,710,043 - AMB_RS21765 0.42 +1.1
4,710,043 - AMB_RS21765 0.42 +2.4
4,710,043 - AMB_RS21765 0.42 +0.2
4,710,043 - AMB_RS21765 0.42 -0.7
4,710,043 - AMB_RS21765 0.42 -0.6
4,710,043 - AMB_RS21765 0.42 +0.9
4,710,043 - AMB_RS21765 0.42 -0.1
4,710,261 + AMB_RS21765 0.59 -0.1
4,710,261 + AMB_RS21765 0.59 -0.3
4,710,261 + AMB_RS21765 0.59 +0.4
4,710,261 + AMB_RS21765 0.59 -0.4
4,710,262 - AMB_RS21765 0.59 +0.1
4,710,264 + AMB_RS21765 0.60 +0.0
4,710,265 - AMB_RS21765 0.60 -0.4
4,710,265 - AMB_RS21765 0.60 -1.3
4,710,267 + AMB_RS21765 0.60 +3.8
4,710,289 - AMB_RS21765 0.61 -0.4
4,710,289 - AMB_RS21765 0.61 -0.6
4,710,289 - AMB_RS21765 0.61 +1.2
4,710,352 - AMB_RS21765 0.66 -0.6
4,710,490 - AMB_RS21765 0.77 +0.5
4,710,490 - AMB_RS21765 0.77 +0.1
4,710,490 - AMB_RS21765 0.77 -0.3
4,710,501 + AMB_RS21765 0.78 -0.4
4,710,501 + AMB_RS21765 0.78 +0.3
4,710,501 + AMB_RS21765 0.78 +0.6
4,710,502 - AMB_RS21765 0.78 +1.2
4,710,502 - AMB_RS21765 0.78 -0.4
4,710,502 - AMB_RS21765 0.78 +0.2
4,710,502 - AMB_RS21765 0.78 -0.1
4,710,502 - AMB_RS21765 0.78 +1.4
4,710,502 - AMB_RS21765 0.78 +0.1
4,710,502 - AMB_RS21765 0.78 -0.2
4,710,502 - AMB_RS21765 0.78 -0.5
4,710,537 + AMB_RS21765 0.81 -0.9
4,710,537 + AMB_RS21765 0.81 +0.2
4,710,537 + AMB_RS21765 0.81 +0.6
4,710,537 + AMB_RS21765 0.81 -0.6
4,710,537 + AMB_RS21765 0.81 -0.6
4,710,538 - AMB_RS21765 0.81 -0.3
4,710,585 + AMB_RS21765 0.84 -0.1
4,710,585 + AMB_RS21765 0.84 +0.2
4,710,585 + AMB_RS21765 0.84 -0.4
4,710,586 - AMB_RS21765 0.85 -1.2
4,710,586 - AMB_RS21765 0.85 -0.5
4,710,586 - AMB_RS21765 0.85 +0.9
4,710,586 - AMB_RS21765 0.85 -0.1
4,710,833 + -0.3
4,710,833 + -0.3
4,710,834 - -0.3
4,710,834 - -0.1
4,710,834 - -0.4
4,711,253 - AMB_RS21770 0.16 +0.1
4,711,750 + AMB_RS21770 0.48 -0.3
4,711,750 + AMB_RS21770 0.48 -0.3
4,711,751 - AMB_RS21770 0.48 -1.8
4,711,819 + AMB_RS21770 0.53 -0.4
4,711,819 + AMB_RS21770 0.53 -0.5
4,711,819 + AMB_RS21770 0.53 +0.3
4,711,819 + AMB_RS21770 0.53 +0.1
4,711,820 - AMB_RS21770 0.53 -0.5
4,712,173 + AMB_RS21770 0.75 +0.2
4,712,173 + AMB_RS21770 0.75 -0.1
4,712,173 + AMB_RS21770 0.75 +0.1
4,712,173 + AMB_RS21770 0.75 -0.1
4,712,174 - AMB_RS21770 0.75 -0.4
4,712,174 - AMB_RS21770 0.75 +0.4
4,712,174 - AMB_RS21770 0.75 +0.5
4,712,174 - AMB_RS21770 0.75 -0.4
4,712,174 - AMB_RS21770 0.75 -0.2
4,712,229 - AMB_RS21770 0.79 +0.4
4,712,374 + AMB_RS21770 0.88 -0.6
4,712,374 + AMB_RS21770 0.88 +0.1
4,712,374 + AMB_RS21770 0.88 -0.0
4,712,374 + AMB_RS21770 0.88 -0.5
4,712,374 + AMB_RS21770 0.88 +0.0
4,712,374 + AMB_RS21770 0.88 -1.2
4,712,375 - AMB_RS21770 0.88 -0.0
4,712,379 - AMB_RS21770 0.89 -1.5
4,712,421 + -0.2
4,712,421 + +0.4
4,712,422 - -0.1
4,712,422 - +0.5
4,712,422 - -1.1
4,712,431 + -0.2
4,712,431 + +1.0
4,712,431 + -0.1
4,712,431 + -0.1
4,712,432 - -0.8
4,712,432 - -0.4
4,712,497 + -0.4
4,712,497 + -0.3
4,712,497 + +0.1
4,712,497 + -0.0
4,712,498 - -2.2
4,712,527 + -0.2
4,712,555 - -2.1
4,712,631 + -0.1
4,712,631 + -0.3
4,712,631 + -1.6
4,712,631 + +0.1
4,712,632 - -0.2
4,712,760 + AMB_RS21775 0.29 +0.4
4,712,761 - AMB_RS21775 0.29 +0.8
4,712,761 - AMB_RS21775 0.29 +0.4
4,712,761 - AMB_RS21775 0.29 -1.1
4,712,785 + AMB_RS21775 0.35 -0.1
4,712,785 + AMB_RS21775 0.35 +0.1
4,712,786 - AMB_RS21775 0.35 +0.4
4,712,786 - AMB_RS21775 0.35 -0.6
4,712,786 - AMB_RS21775 0.35 +0.9
4,712,799 + AMB_RS21775 0.38 -0.2
4,712,799 + AMB_RS21775 0.38 -0.1
4,712,800 - AMB_RS21775 0.38 -0.1
4,712,868 + AMB_RS21775 0.55 +0.9
4,712,869 - AMB_RS21775 0.55 +0.6
4,712,869 - AMB_RS21775 0.55 +1.5
4,712,869 - AMB_RS21775 0.55 +0.8
4,712,869 - AMB_RS21775 0.55 +0.2
4,712,869 - AMB_RS21775 0.55 +0.5
4,713,033 + +0.9
4,713,033 + +0.1
4,713,033 + +0.3
4,713,047 - +0.1
4,713,047 - +0.4
4,713,102 - +0.1

Or see this region's nucleotide sequence