Experiment: 150_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21645 and AMB_RS21650 are separated by 18 nucleotides AMB_RS21650 and AMB_RS21655 are separated by 11 nucleotides AMB_RS21655 and AMB_RS21660 are separated by 49 nucleotides AMB_RS21660 and AMB_RS21665 are separated by 107 nucleotides AMB_RS21665 and AMB_RS21670 are separated by 82 nucleotides
AMB_RS21645: AMB_RS21645 - hypothetical protein, at 4,689,067 to 4,690,551
_RS21645
AMB_RS21650: AMB_RS21650 - hypothetical protein, at 4,690,570 to 4,690,869
_RS21650
AMB_RS21655: AMB_RS21655 - hypothetical protein, at 4,690,881 to 4,691,402
_RS21655
AMB_RS21660: AMB_RS21660 - hypothetical protein, at 4,691,452 to 4,691,952
_RS21660
AMB_RS21665: AMB_RS21665 - hypothetical protein, at 4,692,060 to 4,692,290
_RS21665
AMB_RS21670: AMB_RS21670 - thioredoxin TrxA, at 4,692,373 to 4,692,687
_RS21670
Position (kb) 4691
4692 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4690.745 kb on - strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.768 kb on + strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.769 kb on - strand, within AMB_RS21650 at 4690.868 kb on - strand at 4691.184 kb on + strand, within AMB_RS21655 at 4691.184 kb on + strand, within AMB_RS21655 at 4691.185 kb on - strand, within AMB_RS21655 at 4691.621 kb on + strand, within AMB_RS21660 at 4691.621 kb on + strand, within AMB_RS21660 at 4691.621 kb on + strand, within AMB_RS21660 at 4691.621 kb on + strand, within AMB_RS21660 at 4691.621 kb on + strand, within AMB_RS21660 at 4691.621 kb on + strand, within AMB_RS21660 at 4691.621 kb on + strand, within AMB_RS21660 at 4691.622 kb on - strand, within AMB_RS21660 at 4691.622 kb on - strand, within AMB_RS21660 at 4691.622 kb on - strand, within AMB_RS21660 at 4691.622 kb on - strand, within AMB_RS21660 at 4691.622 kb on - strand, within AMB_RS21660 at 4691.622 kb on - strand, within AMB_RS21660 at 4691.622 kb on - strand, within AMB_RS21660 at 4691.624 kb on + strand, within AMB_RS21660 at 4691.624 kb on + strand, within AMB_RS21660 at 4691.625 kb on - strand, within AMB_RS21660 at 4691.657 kb on + strand, within AMB_RS21660 at 4691.657 kb on + strand, within AMB_RS21660 at 4691.657 kb on + strand, within AMB_RS21660 at 4691.657 kb on + strand, within AMB_RS21660 at 4691.658 kb on - strand, within AMB_RS21660 at 4691.658 kb on - strand, within AMB_RS21660 at 4691.658 kb on - strand, within AMB_RS21660 at 4691.662 kb on + strand, within AMB_RS21660 at 4691.663 kb on - strand, within AMB_RS21660 at 4691.663 kb on - strand, within AMB_RS21660 at 4691.687 kb on + strand, within AMB_RS21660 at 4691.688 kb on - strand, within AMB_RS21660 at 4691.688 kb on - strand, within AMB_RS21660 at 4691.688 kb on - strand, within AMB_RS21660 at 4691.688 kb on - strand, within AMB_RS21660 at 4691.688 kb on - strand, within AMB_RS21660 at 4691.688 kb on - strand, within AMB_RS21660 at 4691.736 kb on - strand, within AMB_RS21660 at 4691.885 kb on + strand, within AMB_RS21660 at 4691.885 kb on + strand, within AMB_RS21660 at 4691.885 kb on + strand, within AMB_RS21660 at 4691.886 kb on - strand, within AMB_RS21660 at 4691.886 kb on - strand, within AMB_RS21660 at 4691.886 kb on - strand, within AMB_RS21660 at 4691.886 kb on - strand, within AMB_RS21660 at 4691.943 kb on + strand at 4691.944 kb on - strand at 4691.945 kb on + strand at 4691.946 kb on - strand at 4691.946 kb on - strand at 4691.952 kb on + strand at 4691.952 kb on + strand at 4691.952 kb on + strand at 4691.953 kb on - strand at 4692.247 kb on + strand, within AMB_RS21665 at 4692.247 kb on + strand, within AMB_RS21665 at 4692.248 kb on - strand, within AMB_RS21665 at 4692.375 kb on - strand at 4692.786 kb on - strand at 4692.786 kb on - strand at 4692.786 kb on - strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_1 remove 4,690,745 - AMB_RS21650 0.58 +0.5 4,690,768 + AMB_RS21650 0.66 -2.7 4,690,768 + AMB_RS21650 0.66 -0.7 4,690,768 + AMB_RS21650 0.66 +1.5 4,690,768 + AMB_RS21650 0.66 -0.2 4,690,769 - AMB_RS21650 0.66 -0.1 4,690,769 - AMB_RS21650 0.66 -0.8 4,690,769 - AMB_RS21650 0.66 -0.8 4,690,769 - AMB_RS21650 0.66 +1.5 4,690,868 - -0.1 4,691,184 + AMB_RS21655 0.58 +0.9 4,691,184 + AMB_RS21655 0.58 -0.1 4,691,185 - AMB_RS21655 0.58 -0.3 4,691,621 + AMB_RS21660 0.34 -0.6 4,691,621 + AMB_RS21660 0.34 -1.2 4,691,621 + AMB_RS21660 0.34 -3.6 4,691,621 + AMB_RS21660 0.34 -0.1 4,691,621 + AMB_RS21660 0.34 -0.8 4,691,621 + AMB_RS21660 0.34 -0.2 4,691,621 + AMB_RS21660 0.34 +0.0 4,691,622 - AMB_RS21660 0.34 -0.4 4,691,622 - AMB_RS21660 0.34 -0.4 4,691,622 - AMB_RS21660 0.34 -0.2 4,691,622 - AMB_RS21660 0.34 +0.0 4,691,622 - AMB_RS21660 0.34 -0.0 4,691,622 - AMB_RS21660 0.34 -1.1 4,691,622 - AMB_RS21660 0.34 +0.7 4,691,624 + AMB_RS21660 0.34 -0.6 4,691,624 + AMB_RS21660 0.34 -1.3 4,691,625 - AMB_RS21660 0.35 +0.4 4,691,657 + AMB_RS21660 0.41 +0.5 4,691,657 + AMB_RS21660 0.41 -1.1 4,691,657 + AMB_RS21660 0.41 -1.2 4,691,657 + AMB_RS21660 0.41 -0.9 4,691,658 - AMB_RS21660 0.41 +0.4 4,691,658 - AMB_RS21660 0.41 -0.8 4,691,658 - AMB_RS21660 0.41 -0.2 4,691,662 + AMB_RS21660 0.42 -1.8 4,691,663 - AMB_RS21660 0.42 +1.3 4,691,663 - AMB_RS21660 0.42 -1.2 4,691,687 + AMB_RS21660 0.47 -0.9 4,691,688 - AMB_RS21660 0.47 -0.0 4,691,688 - AMB_RS21660 0.47 -0.8 4,691,688 - AMB_RS21660 0.47 -0.2 4,691,688 - AMB_RS21660 0.47 -0.2 4,691,688 - AMB_RS21660 0.47 +0.7 4,691,688 - AMB_RS21660 0.47 +0.3 4,691,736 - AMB_RS21660 0.57 +1.1 4,691,885 + AMB_RS21660 0.86 +0.4 4,691,885 + AMB_RS21660 0.86 -1.2 4,691,885 + AMB_RS21660 0.86 -1.2 4,691,886 - AMB_RS21660 0.87 -0.1 4,691,886 - AMB_RS21660 0.87 +0.1 4,691,886 - AMB_RS21660 0.87 -2.6 4,691,886 - AMB_RS21660 0.87 -0.1 4,691,943 + -1.0 4,691,944 - -0.4 4,691,945 + -0.5 4,691,946 - -0.7 4,691,946 - +1.3 4,691,952 + +0.2 4,691,952 + -0.6 4,691,952 + -0.4 4,691,953 - -1.3 4,692,247 + AMB_RS21665 0.81 -1.0 4,692,247 + AMB_RS21665 0.81 +0.4 4,692,248 - AMB_RS21665 0.81 -0.5 4,692,375 - -1.4 4,692,786 - +2.7 4,692,786 - -1.2 4,692,786 - +0.8 4,692,925 + -0.6 4,692,925 + +0.0 4,692,925 + +0.4 4,692,925 + +0.2 4,692,925 + -1.5 4,692,925 + -0.1 4,692,925 + -0.3 4,692,927 + -1.2
Or see this region's nucleotide sequence