Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20520

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20515 and AMB_RS20520 overlap by 23 nucleotidesAMB_RS20520 and AMB_RS20525 are separated by 84 nucleotides AMB_RS20515: AMB_RS20515 - ABC protease/lipase transporter ATPase/permease, at 4,456,643 to 4,458,661 _RS20515 AMB_RS20520: AMB_RS20520 - outer membrane protein, at 4,458,639 to 4,460,123 _RS20520 AMB_RS20525: AMB_RS20525 - adenylate/guanylate cyclase domain-containing protein, at 4,460,208 to 4,461,500 _RS20525 Position (kb) 4458 4459 4460 4461Strain fitness (log2 ratio) -2 -1 0 1at 4457.679 kb on + strand, within AMB_RS20515at 4457.679 kb on + strand, within AMB_RS20515at 4457.680 kb on - strand, within AMB_RS20515at 4457.775 kb on + strand, within AMB_RS20515at 4457.775 kb on + strand, within AMB_RS20515at 4457.775 kb on + strand, within AMB_RS20515at 4457.775 kb on + strand, within AMB_RS20515at 4457.776 kb on - strand, within AMB_RS20515at 4457.776 kb on - strand, within AMB_RS20515at 4457.776 kb on - strand, within AMB_RS20515at 4458.192 kb on + strand, within AMB_RS20515at 4458.192 kb on + strand, within AMB_RS20515at 4458.193 kb on - strand, within AMB_RS20515at 4458.546 kb on + strandat 4458.769 kb on + strandat 4458.769 kb on + strandat 4458.769 kb on + strandat 4458.770 kb on - strandat 4458.770 kb on - strandat 4458.916 kb on + strand, within AMB_RS20520at 4459.055 kb on + strand, within AMB_RS20520at 4459.056 kb on - strand, within AMB_RS20520at 4459.105 kb on + strand, within AMB_RS20520at 4459.105 kb on + strand, within AMB_RS20520at 4459.106 kb on - strand, within AMB_RS20520at 4459.106 kb on - strand, within AMB_RS20520at 4459.106 kb on - strand, within AMB_RS20520at 4459.129 kb on + strand, within AMB_RS20520at 4459.130 kb on - strand, within AMB_RS20520at 4459.355 kb on + strand, within AMB_RS20520at 4459.355 kb on + strand, within AMB_RS20520at 4459.355 kb on + strand, within AMB_RS20520at 4459.356 kb on - strand, within AMB_RS20520at 4459.534 kb on + strand, within AMB_RS20520at 4459.534 kb on + strand, within AMB_RS20520at 4459.534 kb on + strand, within AMB_RS20520at 4459.534 kb on + strand, within AMB_RS20520at 4459.534 kb on + strand, within AMB_RS20520at 4459.535 kb on - strand, within AMB_RS20520at 4459.535 kb on - strand, within AMB_RS20520at 4459.573 kb on + strand, within AMB_RS20520at 4459.573 kb on + strand, within AMB_RS20520at 4459.574 kb on - strand, within AMB_RS20520at 4459.748 kb on - strand, within AMB_RS20520at 4459.787 kb on + strand, within AMB_RS20520at 4459.787 kb on + strand, within AMB_RS20520at 4460.205 kb on + strandat 4460.209 kb on + strandat 4460.209 kb on + strandat 4460.458 kb on + strand, within AMB_RS20525at 4460.716 kb on + strand, within AMB_RS20525at 4460.716 kb on + strand, within AMB_RS20525at 4460.716 kb on + strand, within AMB_RS20525at 4460.717 kb on - strand, within AMB_RS20525at 4460.882 kb on - strand, within AMB_RS20525at 4460.980 kb on + strand, within AMB_RS20525at 4460.981 kb on - strand, within AMB_RS20525at 4460.981 kb on - strand, within AMB_RS20525at 4461.025 kb on + strand, within AMB_RS20525at 4461.025 kb on + strand, within AMB_RS20525at 4461.025 kb on + strand, within AMB_RS20525at 4461.025 kb on + strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.026 kb on - strand, within AMB_RS20525at 4461.035 kb on - strand, within AMB_RS20525

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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4,457,679 + AMB_RS20515 0.51 +0.2
4,457,679 + AMB_RS20515 0.51 -0.2
4,457,680 - AMB_RS20515 0.51 +0.3
4,457,775 + AMB_RS20515 0.56 +0.5
4,457,775 + AMB_RS20515 0.56 -1.9
4,457,775 + AMB_RS20515 0.56 -0.3
4,457,775 + AMB_RS20515 0.56 -1.5
4,457,776 - AMB_RS20515 0.56 +0.3
4,457,776 - AMB_RS20515 0.56 -0.3
4,457,776 - AMB_RS20515 0.56 -0.1
4,458,192 + AMB_RS20515 0.77 -0.9
4,458,192 + AMB_RS20515 0.77 +0.5
4,458,193 - AMB_RS20515 0.77 +0.2
4,458,546 + +1.5
4,458,769 + -0.0
4,458,769 + -2.0
4,458,769 + +0.2
4,458,770 - -2.0
4,458,770 - +0.8
4,458,916 + AMB_RS20520 0.19 +0.3
4,459,055 + AMB_RS20520 0.28 -0.2
4,459,056 - AMB_RS20520 0.28 -0.1
4,459,105 + AMB_RS20520 0.31 -0.1
4,459,105 + AMB_RS20520 0.31 +0.3
4,459,106 - AMB_RS20520 0.31 +1.2
4,459,106 - AMB_RS20520 0.31 +0.4
4,459,106 - AMB_RS20520 0.31 -0.1
4,459,129 + AMB_RS20520 0.33 +0.3
4,459,130 - AMB_RS20520 0.33 +0.4
4,459,355 + AMB_RS20520 0.48 +0.2
4,459,355 + AMB_RS20520 0.48 -0.1
4,459,355 + AMB_RS20520 0.48 -1.1
4,459,356 - AMB_RS20520 0.48 -0.1
4,459,534 + AMB_RS20520 0.60 -0.8
4,459,534 + AMB_RS20520 0.60 -0.1
4,459,534 + AMB_RS20520 0.60 -0.5
4,459,534 + AMB_RS20520 0.60 -0.8
4,459,534 + AMB_RS20520 0.60 -0.4
4,459,535 - AMB_RS20520 0.60 +0.6
4,459,535 - AMB_RS20520 0.60 +0.1
4,459,573 + AMB_RS20520 0.63 +0.2
4,459,573 + AMB_RS20520 0.63 -2.2
4,459,574 - AMB_RS20520 0.63 +0.5
4,459,748 - AMB_RS20520 0.75 -1.1
4,459,787 + AMB_RS20520 0.77 -0.5
4,459,787 + AMB_RS20520 0.77 +0.0
4,460,205 + +0.9
4,460,209 + +0.1
4,460,209 + -0.3
4,460,458 + AMB_RS20525 0.19 -1.7
4,460,716 + AMB_RS20525 0.39 -0.2
4,460,716 + AMB_RS20525 0.39 -0.4
4,460,716 + AMB_RS20525 0.39 +0.5
4,460,717 - AMB_RS20525 0.39 -2.0
4,460,882 - AMB_RS20525 0.52 -0.1
4,460,980 + AMB_RS20525 0.60 +0.1
4,460,981 - AMB_RS20525 0.60 +0.3
4,460,981 - AMB_RS20525 0.60 -1.1
4,461,025 + AMB_RS20525 0.63 -1.9
4,461,025 + AMB_RS20525 0.63 -0.6
4,461,025 + AMB_RS20525 0.63 -0.4
4,461,025 + AMB_RS20525 0.63 +0.1
4,461,026 - AMB_RS20525 0.63 +0.1
4,461,026 - AMB_RS20525 0.63 +0.2
4,461,026 - AMB_RS20525 0.63 +0.1
4,461,026 - AMB_RS20525 0.63 -0.4
4,461,026 - AMB_RS20525 0.63 -0.5
4,461,026 - AMB_RS20525 0.63 +0.0
4,461,026 - AMB_RS20525 0.63 -1.9
4,461,026 - AMB_RS20525 0.63 -0.3
4,461,026 - AMB_RS20525 0.63 -0.6
4,461,026 - AMB_RS20525 0.63 -0.4
4,461,026 - AMB_RS20525 0.63 -1.2
4,461,026 - AMB_RS20525 0.63 +0.7
4,461,026 - AMB_RS20525 0.63 -0.3
4,461,026 - AMB_RS20525 0.63 -0.1
4,461,026 - AMB_RS20525 0.63 +0.2
4,461,035 - AMB_RS20525 0.64 +0.4

Or see this region's nucleotide sequence