Experiment: 150_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19840 and AMB_RS19845 are separated by 10 nucleotides AMB_RS19845 and AMB_RS19850 are separated by 12 nucleotides AMB_RS19850 and AMB_RS19855 are separated by 12 nucleotides AMB_RS19855 and AMB_RS19860 are separated by 223 nucleotides
AMB_RS19840: AMB_RS19840 - hypothetical protein, at 4,333,345 to 4,334,004
_RS19840
AMB_RS19845: AMB_RS19845 - hypothetical protein, at 4,334,015 to 4,334,362
_RS19845
AMB_RS19850: AMB_RS19850 - hypothetical protein, at 4,334,375 to 4,334,668
_RS19850
AMB_RS19855: AMB_RS19855 - PhoH family protein, at 4,334,681 to 4,335,520
_RS19855
AMB_RS19860: AMB_RS19860 - HlyC/CorC family transporter, at 4,335,744 to 4,337,036
_RS19860
Position (kb) 4334
4335
4336 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4333.699 kb on + strand, within AMB_RS19840 at 4333.699 kb on + strand, within AMB_RS19840 at 4333.699 kb on + strand, within AMB_RS19840 at 4333.699 kb on + strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.700 kb on - strand, within AMB_RS19840 at 4333.701 kb on + strand, within AMB_RS19840 at 4333.701 kb on + strand, within AMB_RS19840 at 4333.702 kb on - strand, within AMB_RS19840 at 4334.213 kb on + strand, within AMB_RS19845 at 4334.213 kb on + strand, within AMB_RS19845 at 4334.213 kb on + strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.214 kb on - strand, within AMB_RS19845 at 4334.361 kb on - strand at 4334.609 kb on + strand, within AMB_RS19850 at 4334.609 kb on + strand, within AMB_RS19850 at 4334.610 kb on - strand, within AMB_RS19850 at 4334.610 kb on - strand, within AMB_RS19850 at 4334.610 kb on - strand, within AMB_RS19850 at 4334.895 kb on + strand, within AMB_RS19855 at 4334.895 kb on + strand, within AMB_RS19855 at 4334.895 kb on + strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.896 kb on - strand, within AMB_RS19855 at 4334.956 kb on + strand, within AMB_RS19855 at 4334.956 kb on + strand, within AMB_RS19855 at 4334.956 kb on + strand, within AMB_RS19855 at 4334.957 kb on - strand, within AMB_RS19855 at 4334.957 kb on - strand, within AMB_RS19855 at 4334.957 kb on - strand, within AMB_RS19855 at 4334.957 kb on - strand, within AMB_RS19855 at 4334.958 kb on + strand, within AMB_RS19855 at 4334.958 kb on + strand, within AMB_RS19855 at 4334.958 kb on + strand, within AMB_RS19855 at 4334.958 kb on + strand, within AMB_RS19855 at 4334.958 kb on + strand, within AMB_RS19855 at 4334.959 kb on - strand, within AMB_RS19855 at 4334.959 kb on - strand, within AMB_RS19855 at 4334.959 kb on - strand, within AMB_RS19855 at 4334.959 kb on - strand, within AMB_RS19855 at 4334.959 kb on - strand, within AMB_RS19855 at 4335.042 kb on + strand, within AMB_RS19855 at 4335.057 kb on + strand, within AMB_RS19855 at 4335.192 kb on + strand, within AMB_RS19855 at 4335.192 kb on + strand, within AMB_RS19855 at 4335.192 kb on + strand, within AMB_RS19855 at 4335.192 kb on + strand, within AMB_RS19855 at 4335.192 kb on + strand, within AMB_RS19855 at 4335.193 kb on - strand, within AMB_RS19855 at 4335.193 kb on - strand, within AMB_RS19855 at 4335.193 kb on - strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.300 kb on + strand, within AMB_RS19855 at 4335.301 kb on - strand, within AMB_RS19855 at 4335.301 kb on - strand, within AMB_RS19855 at 4335.301 kb on - strand, within AMB_RS19855 at 4335.360 kb on + strand, within AMB_RS19855 at 4335.361 kb on - strand, within AMB_RS19855 at 4335.619 kb on + strand at 4335.620 kb on - strand at 4335.620 kb on - strand at 4335.620 kb on - strand at 4335.672 kb on + strand at 4335.673 kb on - strand at 4335.673 kb on - strand at 4335.673 kb on - strand at 4335.673 kb on - strand at 4335.673 kb on - strand at 4335.675 kb on + strand at 4335.676 kb on - strand at 4335.676 kb on - strand at 4335.680 kb on + strand at 4335.680 kb on + strand at 4335.680 kb on + strand at 4335.680 kb on + strand at 4335.681 kb on - strand at 4335.681 kb on - strand at 4335.681 kb on - strand at 4335.977 kb on + strand, within AMB_RS19860 at 4335.978 kb on - strand, within AMB_RS19860 at 4335.978 kb on - strand, within AMB_RS19860 at 4335.979 kb on + strand, within AMB_RS19860 at 4335.979 kb on + strand, within AMB_RS19860 at 4335.979 kb on + strand, within AMB_RS19860 at 4335.979 kb on + strand, within AMB_RS19860 at 4335.979 kb on + strand, within AMB_RS19860 at 4335.979 kb on + strand, within AMB_RS19860 at 4335.979 kb on + strand, within AMB_RS19860 at 4335.980 kb on - strand, within AMB_RS19860 at 4335.980 kb on - strand, within AMB_RS19860 at 4335.980 kb on - strand, within AMB_RS19860 at 4335.980 kb on - strand, within AMB_RS19860 at 4335.980 kb on - strand, within AMB_RS19860 at 4335.980 kb on - strand, within AMB_RS19860 at 4336.096 kb on + strand, within AMB_RS19860 at 4336.096 kb on + strand, within AMB_RS19860 at 4336.097 kb on - strand, within AMB_RS19860
Per-strain Table
Position Strand Gene LocusTag Fraction 150_initial_1 remove 4,333,699 + AMB_RS19840 0.54 -2.6 4,333,699 + AMB_RS19840 0.54 -0.2 4,333,699 + AMB_RS19840 0.54 -1.5 4,333,699 + AMB_RS19840 0.54 -0.3 4,333,700 - AMB_RS19840 0.54 -0.4 4,333,700 - AMB_RS19840 0.54 -0.2 4,333,700 - AMB_RS19840 0.54 +0.7 4,333,700 - AMB_RS19840 0.54 -0.3 4,333,701 + AMB_RS19840 0.54 -0.3 4,333,701 + AMB_RS19840 0.54 -0.4 4,333,702 - AMB_RS19840 0.54 -0.4 4,334,213 + AMB_RS19845 0.57 -0.2 4,334,213 + AMB_RS19845 0.57 -1.8 4,334,213 + AMB_RS19845 0.57 -0.4 4,334,214 - AMB_RS19845 0.57 -0.5 4,334,214 - AMB_RS19845 0.57 +0.3 4,334,214 - AMB_RS19845 0.57 -0.5 4,334,214 - AMB_RS19845 0.57 -0.9 4,334,214 - AMB_RS19845 0.57 +0.9 4,334,361 - +0.3 4,334,609 + AMB_RS19850 0.80 +0.6 4,334,609 + AMB_RS19850 0.80 +0.8 4,334,610 - AMB_RS19850 0.80 -0.3 4,334,610 - AMB_RS19850 0.80 -0.2 4,334,610 - AMB_RS19850 0.80 -0.5 4,334,895 + AMB_RS19855 0.25 +0.6 4,334,895 + AMB_RS19855 0.25 -0.5 4,334,895 + AMB_RS19855 0.25 -0.1 4,334,896 - AMB_RS19855 0.26 -0.4 4,334,896 - AMB_RS19855 0.26 +0.5 4,334,896 - AMB_RS19855 0.26 +1.0 4,334,896 - AMB_RS19855 0.26 -0.0 4,334,896 - AMB_RS19855 0.26 +0.9 4,334,896 - AMB_RS19855 0.26 +0.0 4,334,896 - AMB_RS19855 0.26 -0.2 4,334,896 - AMB_RS19855 0.26 +0.1 4,334,896 - AMB_RS19855 0.26 -0.1 4,334,896 - AMB_RS19855 0.26 -0.3 4,334,896 - AMB_RS19855 0.26 +0.4 4,334,896 - AMB_RS19855 0.26 +1.1 4,334,956 + AMB_RS19855 0.33 +0.3 4,334,956 + AMB_RS19855 0.33 +0.3 4,334,956 + AMB_RS19855 0.33 -1.9 4,334,957 - AMB_RS19855 0.33 -1.2 4,334,957 - AMB_RS19855 0.33 -0.1 4,334,957 - AMB_RS19855 0.33 +0.2 4,334,957 - AMB_RS19855 0.33 -0.1 4,334,958 + AMB_RS19855 0.33 -0.6 4,334,958 + AMB_RS19855 0.33 +0.3 4,334,958 + AMB_RS19855 0.33 +1.4 4,334,958 + AMB_RS19855 0.33 -1.7 4,334,958 + AMB_RS19855 0.33 +1.7 4,334,959 - AMB_RS19855 0.33 +0.8 4,334,959 - AMB_RS19855 0.33 +0.3 4,334,959 - AMB_RS19855 0.33 -0.3 4,334,959 - AMB_RS19855 0.33 +0.8 4,334,959 - AMB_RS19855 0.33 -0.6 4,335,042 + AMB_RS19855 0.43 -0.2 4,335,057 + AMB_RS19855 0.45 -0.4 4,335,192 + AMB_RS19855 0.61 -0.8 4,335,192 + AMB_RS19855 0.61 -0.5 4,335,192 + AMB_RS19855 0.61 -1.0 4,335,192 + AMB_RS19855 0.61 -0.6 4,335,192 + AMB_RS19855 0.61 +0.0 4,335,193 - AMB_RS19855 0.61 +0.7 4,335,193 - AMB_RS19855 0.61 +0.0 4,335,193 - AMB_RS19855 0.61 -1.2 4,335,300 + AMB_RS19855 0.74 +0.1 4,335,300 + AMB_RS19855 0.74 -0.1 4,335,300 + AMB_RS19855 0.74 +1.2 4,335,300 + AMB_RS19855 0.74 +0.2 4,335,300 + AMB_RS19855 0.74 -0.2 4,335,300 + AMB_RS19855 0.74 +0.1 4,335,300 + AMB_RS19855 0.74 -0.7 4,335,300 + AMB_RS19855 0.74 -0.5 4,335,301 - AMB_RS19855 0.74 +0.3 4,335,301 - AMB_RS19855 0.74 +0.6 4,335,301 - AMB_RS19855 0.74 -0.7 4,335,360 + AMB_RS19855 0.81 +0.0 4,335,361 - AMB_RS19855 0.81 -0.1 4,335,619 + -0.8 4,335,620 - -0.4 4,335,620 - +0.1 4,335,620 - -1.1 4,335,672 + +0.0 4,335,673 - -0.5 4,335,673 - +0.0 4,335,673 - -2.0 4,335,673 - -1.0 4,335,673 - -0.4 4,335,675 + -0.5 4,335,676 - +0.3 4,335,676 - -0.2 4,335,680 + -1.4 4,335,680 + -0.7 4,335,680 + -0.1 4,335,680 + -0.4 4,335,681 - -0.1 4,335,681 - +0.5 4,335,681 - -0.2 4,335,977 + AMB_RS19860 0.18 -1.6 4,335,978 - AMB_RS19860 0.18 -0.1 4,335,978 - AMB_RS19860 0.18 -0.6 4,335,979 + AMB_RS19860 0.18 +1.7 4,335,979 + AMB_RS19860 0.18 -0.7 4,335,979 + AMB_RS19860 0.18 +0.1 4,335,979 + AMB_RS19860 0.18 -2.7 4,335,979 + AMB_RS19860 0.18 -0.5 4,335,979 + AMB_RS19860 0.18 +0.3 4,335,979 + AMB_RS19860 0.18 +1.9 4,335,980 - AMB_RS19860 0.18 -0.9 4,335,980 - AMB_RS19860 0.18 -0.8 4,335,980 - AMB_RS19860 0.18 +0.3 4,335,980 - AMB_RS19860 0.18 +0.3 4,335,980 - AMB_RS19860 0.18 +1.3 4,335,980 - AMB_RS19860 0.18 +0.2 4,336,096 + AMB_RS19860 0.27 -1.2 4,336,096 + AMB_RS19860 0.27 -1.0 4,336,097 - AMB_RS19860 0.27 -0.7
Or see this region's nucleotide sequence