Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19430

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19425 and AMB_RS19430 are separated by 879 nucleotidesAMB_RS19430 and AMB_RS19435 overlap by 4 nucleotidesAMB_RS19435 and AMB_RS19440 overlap by 4 nucleotides AMB_RS19425: AMB_RS19425 - hypothetical protein, at 4,236,440 to 4,237,171 _RS19425 AMB_RS19430: AMB_RS19430 - transcriptional regulator MraZ, at 4,238,051 to 4,238,512 _RS19430 AMB_RS19435: AMB_RS19435 - ribosomal RNA small subunit methyltransferase H, at 4,238,509 to 4,239,465 _RS19435 AMB_RS19440: AMB_RS19440 - periplasmic protein TonB, at 4,239,462 to 4,240,088 _RS19440 Position (kb) 4238 4239Strain fitness (log2 ratio) -2 -1 0 1at 4237.173 kb on + strandat 4237.200 kb on + strandat 4237.259 kb on + strandat 4237.259 kb on + strandat 4237.260 kb on - strandat 4237.891 kb on + strandat 4237.891 kb on + strandat 4237.914 kb on + strandat 4237.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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4,237,173 + -0.6
4,237,200 + -1.0
4,237,259 + -0.6
4,237,259 + -0.1
4,237,260 - -0.6
4,237,891 + -1.6
4,237,891 + +0.4
4,237,914 + -1.7
4,237,914 + -1.9

Or see this region's nucleotide sequence