Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09390

Experiment: 150_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09385 and AMB_RS09390 are separated by 14 nucleotidesAMB_RS09390 and AMB_RS09395 are separated by 10 nucleotidesAMB_RS09395 and AMB_RS09400 overlap by 4 nucleotides AMB_RS09385: AMB_RS09385 - sulfotransferase, at 1,997,392 to 1,998,546 _RS09385 AMB_RS09390: AMB_RS09390 - Crp/Fnr family transcriptional regulator, at 1,998,561 to 1,999,289 _RS09390 AMB_RS09395: AMB_RS09395 - ABC transporter ATP-binding protein, at 1,999,300 to 2,000,121 _RS09395 AMB_RS09400: AMB_RS09400 - ABC transporter permease, at 2,000,118 to 2,001,002 _RS09400 Position (kb) 1998 1999 2000Strain fitness (log2 ratio) -2 -1 0 1 2at 1997.583 kb on - strand, within AMB_RS09385at 1997.583 kb on - strand, within AMB_RS09385at 1997.583 kb on - strand, within AMB_RS09385at 1997.583 kb on - strand, within AMB_RS09385at 1997.591 kb on + strand, within AMB_RS09385at 1997.592 kb on - strand, within AMB_RS09385at 1997.645 kb on + strand, within AMB_RS09385at 1997.645 kb on + strand, within AMB_RS09385at 1997.646 kb on - strand, within AMB_RS09385at 1997.646 kb on - strand, within AMB_RS09385at 1997.792 kb on + strand, within AMB_RS09385at 1997.892 kb on - strand, within AMB_RS09385at 1997.892 kb on - strand, within AMB_RS09385at 1997.958 kb on - strand, within AMB_RS09385at 1998.080 kb on + strand, within AMB_RS09385at 1998.173 kb on + strand, within AMB_RS09385at 1998.173 kb on + strand, within AMB_RS09385at 1998.173 kb on + strand, within AMB_RS09385at 1998.173 kb on + strand, within AMB_RS09385at 1998.173 kb on + strand, within AMB_RS09385at 1998.174 kb on - strand, within AMB_RS09385at 1998.174 kb on - strand, within AMB_RS09385at 1998.174 kb on - strand, within AMB_RS09385at 1998.239 kb on + strand, within AMB_RS09385at 1998.404 kb on + strand, within AMB_RS09385at 1998.404 kb on + strand, within AMB_RS09385at 1998.405 kb on - strand, within AMB_RS09385at 1998.422 kb on + strand, within AMB_RS09385at 1998.422 kb on + strand, within AMB_RS09385at 1998.423 kb on - strand, within AMB_RS09385at 1998.835 kb on + strand, within AMB_RS09390at 1998.835 kb on + strand, within AMB_RS09390at 1998.835 kb on + strand, within AMB_RS09390at 1998.836 kb on - strand, within AMB_RS09390at 1998.836 kb on - strand, within AMB_RS09390at 1999.025 kb on - strand, within AMB_RS09390at 1999.025 kb on - strand, within AMB_RS09390at 1999.060 kb on + strand, within AMB_RS09390at 1999.060 kb on + strand, within AMB_RS09390at 1999.061 kb on - strand, within AMB_RS09390at 1999.063 kb on + strand, within AMB_RS09390at 1999.063 kb on + strand, within AMB_RS09390at 1999.064 kb on - strand, within AMB_RS09390at 1999.064 kb on - strand, within AMB_RS09390at 1999.180 kb on + strand, within AMB_RS09390at 1999.181 kb on - strand, within AMB_RS09390at 1999.742 kb on + strand, within AMB_RS09395at 1999.742 kb on + strand, within AMB_RS09395at 1999.742 kb on + strand, within AMB_RS09395at 1999.743 kb on - strand, within AMB_RS09395at 2000.269 kb on + strand, within AMB_RS09400at 2000.269 kb on + strand, within AMB_RS09400at 2000.269 kb on + strand, within AMB_RS09400at 2000.269 kb on + strand, within AMB_RS09400at 2000.269 kb on + strand, within AMB_RS09400at 2000.270 kb on - strand, within AMB_RS09400

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_initial_1
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1,997,583 - AMB_RS09385 0.17 +1.2
1,997,583 - AMB_RS09385 0.17 +0.7
1,997,583 - AMB_RS09385 0.17 +0.5
1,997,583 - AMB_RS09385 0.17 -0.3
1,997,591 + AMB_RS09385 0.17 -0.1
1,997,592 - AMB_RS09385 0.17 -0.5
1,997,645 + AMB_RS09385 0.22 -0.1
1,997,645 + AMB_RS09385 0.22 -1.0
1,997,646 - AMB_RS09385 0.22 +0.8
1,997,646 - AMB_RS09385 0.22 -0.6
1,997,792 + AMB_RS09385 0.35 -0.4
1,997,892 - AMB_RS09385 0.43 +1.9
1,997,892 - AMB_RS09385 0.43 +0.0
1,997,958 - AMB_RS09385 0.49 +0.4
1,998,080 + AMB_RS09385 0.60 -1.0
1,998,173 + AMB_RS09385 0.68 -2.1
1,998,173 + AMB_RS09385 0.68 -0.1
1,998,173 + AMB_RS09385 0.68 -0.2
1,998,173 + AMB_RS09385 0.68 -0.8
1,998,173 + AMB_RS09385 0.68 +0.2
1,998,174 - AMB_RS09385 0.68 -1.5
1,998,174 - AMB_RS09385 0.68 +0.9
1,998,174 - AMB_RS09385 0.68 -1.4
1,998,239 + AMB_RS09385 0.73 +1.2
1,998,404 + AMB_RS09385 0.88 +0.3
1,998,404 + AMB_RS09385 0.88 -0.2
1,998,405 - AMB_RS09385 0.88 +0.2
1,998,422 + AMB_RS09385 0.89 -1.3
1,998,422 + AMB_RS09385 0.89 -0.6
1,998,423 - AMB_RS09385 0.89 -0.3
1,998,835 + AMB_RS09390 0.38 +0.2
1,998,835 + AMB_RS09390 0.38 -0.3
1,998,835 + AMB_RS09390 0.38 -0.1
1,998,836 - AMB_RS09390 0.38 -0.1
1,998,836 - AMB_RS09390 0.38 +0.2
1,999,025 - AMB_RS09390 0.64 -0.1
1,999,025 - AMB_RS09390 0.64 +0.0
1,999,060 + AMB_RS09390 0.68 +0.4
1,999,060 + AMB_RS09390 0.68 +0.1
1,999,061 - AMB_RS09390 0.69 -0.3
1,999,063 + AMB_RS09390 0.69 -0.3
1,999,063 + AMB_RS09390 0.69 -1.0
1,999,064 - AMB_RS09390 0.69 -1.9
1,999,064 - AMB_RS09390 0.69 -0.9
1,999,180 + AMB_RS09390 0.85 -0.2
1,999,181 - AMB_RS09390 0.85 +0.6
1,999,742 + AMB_RS09395 0.54 -0.1
1,999,742 + AMB_RS09395 0.54 -0.5
1,999,742 + AMB_RS09395 0.54 -0.6
1,999,743 - AMB_RS09395 0.54 +0.7
2,000,269 + AMB_RS09400 0.17 -0.4
2,000,269 + AMB_RS09400 0.17 -0.0
2,000,269 + AMB_RS09400 0.17 -0.9
2,000,269 + AMB_RS09400 0.17 +1.5
2,000,269 + AMB_RS09400 0.17 -0.3
2,000,270 - AMB_RS09400 0.17 -0.1

Or see this region's nucleotide sequence